RchiOBHm_Chr3g0492801

Fanconi-associated nuclease 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
39788529 .. 39789102
574 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45568

Sequence Viewer

Length: 441 bp
ATGATAGTTTGGGTAGATATTCCAAAGAATCATGAAGCGTTTTTATGGAGGCTTACAATTGATATGACATGCATTGAAGATGCTGTGAATTCTGCTATAGCATGGCCTGCTAACAAAGTTGTTTTGGAAAAGATATCAGAAAGTCAAGATGGTGAAATTGCATCCTCTCATTCGAGTGTCAACTCCAAATCAAAGAAAAGGTGCAAGTTGATGGATGTTAGTGGATCAGGACAAATAGTTGCTGAAGGACGTTGGTCCTCAAGTGATCCAGATCAGGTTGTTCATTTTGTTCCCTTGGGGCCTAATGCTATGAGAGTTTGGGTAGATACACCGAAAGTCCCCACTGCATCCCTTTGGAGGCCATCATCTGAGCTGGAAATTATTGAAGATGCTATTGGTACTACAATAGCATGGCTAGCAGACAAAGTGGTTTTCTTTTAG

Protein Analysis

146

Amino Acids

16.16

Weight (kDa)

5.12

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 63 - 145 1.7e-08 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 232, 260
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 1 cut(s) 400
AfiI CCNNNNNNNGG 1 cut(s) 357
AgsI TTSAA 2 cut(s) 77, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 378, 410
AluBI AGCT 1 cut(s) 373
AluI AGCT 1 cut(s) 373
AlwI GGATC 2 cut(s) 232, 260
AoxI GGCC 3 cut(s) 104, 299, 359
ApoI RAATTY 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 255, 299
AsuHPI GGTGA 1 cut(s) 164
AsuNHI GCTAGC 1 cut(s) 415
AvaII GGWCC 1 cut(s) 255
BccI CCATC 3 cut(s) 143, 205, 370
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 255, 299
BmiI GGNNCC 1 cut(s) 300
BmsI GCATC 4 cut(s) 70, 170, 356, 379
BmtI GCTAGC 1 cut(s) 419
BoxI GACNNNNGTC 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 3 cut(s) 161, 220, 347
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMII CTCAG 1 cut(s) 360
BshFI GGCC 3 cut(s) 106, 301, 361
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 3 cut(s) 106, 301, 361
Bsp143I GATC 3 cut(s) 224, 265, 271
BspANI GGCC 3 cut(s) 106, 301, 361
BspCNI CTCAG 1 cut(s) 361
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 300
BspOI GCTAGC 1 cut(s) 419
BspPI GGATC 2 cut(s) 232, 260
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 3 cut(s) 224, 265, 271
BssT1I CCWWGG 1 cut(s) 294
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 108, 417
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 3 cut(s) 161, 220, 347
BstKTI GATC 3 cut(s) 227, 268, 274
BstMBI GATC 3 cut(s) 224, 265, 271
BstMWI GCNNNNNNNGC 2 cut(s) 107, 416
BstNSI RCATGY 1 cut(s) 72
BstPAI GACNNNNGTC 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 96
BsuRI GGCC 3 cut(s) 106, 301, 361
BtsCI GGATG 3 cut(s) 161, 220, 347
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 108, 417
CciI TCATGA 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 255, 299
Csp6I GTAC 1 cut(s) 399
CviAII CATG 4 cut(s) 32, 69, 102, 411
CviJI RGCY 6 cut(s) 52, 106, 301, 361, 373, 415
CviKI_1 RGCY 6 cut(s) 52, 106, 301, 361, 373, 415
CviQI GTAC 1 cut(s) 399
DdeI CTNAG 1 cut(s) 369
DpnI GATC 3 cut(s) 226, 267, 273
DpnII GATC 3 cut(s) 224, 265, 271
Eco130I CCWWGG 1 cut(s) 294
Eco32I GATATC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 88
EcoRV GATATC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 4 cut(s) 35, 72, 105, 414
FaiI YATR 8 cut(s) 33, 46, 65, 70, 98, 103, 311, 412
FaqI GGGAC 1 cut(s) 323
FatI CATG 4 cut(s) 31, 68, 101, 410
FokI GGATG 3 cut(s) 148, 227, 334
FspBI CTAG 1 cut(s) 416
HaeIII GGCC 3 cut(s) 106, 301, 361
Hin1II CATG 4 cut(s) 35, 72, 105, 414
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 28
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 139, 370
Hpy188III TCNNGA 4 cut(s) 32, 146, 228, 269
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 72, 161, 204, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 416
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 4 cut(s) 35, 72, 105, 414
Kzo9I GATC 3 cut(s) 224, 265, 271
LpnPI CCDG 5 cut(s) 120, 213, 260, 282, 359
LweI GCATC 4 cut(s) 70, 170, 356, 379
MaeI CTAG 1 cut(s) 416
MaeII ACGT 1 cut(s) 250
MalI GATC 3 cut(s) 226, 267, 273
MboI GATC 3 cut(s) 224, 265, 271
MboII GAAGA 2 cut(s) 89, 398
MfeI CAATTG 1 cut(s) 57
MluCI AATT 4 cut(s) 57, 88, 156, 378
MnlI CCTC 4 cut(s) 42, 175, 268, 351
Mph1103I ATGCAT 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 174
MunI CAATTG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 107, 416
NdeII GATC 3 cut(s) 224, 265, 271
NheI GCTAGC 1 cut(s) 415
NlaIII CATG 4 cut(s) 35, 72, 105, 414
NlaIV GGNNCC 1 cut(s) 300
NsiI ATGCAT 1 cut(s) 74
NspI RCATGY 1 cut(s) 72
PagI TCATGA 1 cut(s) 31
PfeI GAWTC 1 cut(s) 28
PshAI GACNNNNGTC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 2 cut(s) 255, 299
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
RseI CAYNNNNRTG 1 cut(s) 174
Sau3AI GATC 3 cut(s) 224, 265, 271
Sau96I GGNCC 2 cut(s) 255, 299
SetI ASST 4 cut(s) 203, 253, 279, 375
SfaNI GCATC 4 cut(s) 70, 170, 356, 379
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 4 cut(s) 57, 88, 156, 378
SspMI CTAG 1 cut(s) 416
StyI CCWWGG 1 cut(s) 294
TaiI ACGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 173
TasI AATT 4 cut(s) 57, 88, 156, 378
TfiI GAWTC 1 cut(s) 28
TscAI CASTG 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 48, 272
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 88
XceI RCATGY 1 cut(s) 72
XspI CTAG 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.