RchiOBHm_Chr3g0458231

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000089
Physical Location & Seq
Reverse (-)
6978616 .. 6983647
5032 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42493

Sequence Viewer

Length: 2073 bp
ATGGTGAGAGATATTACAAAGGCAGGTCACAGTAAGAGGAAGCATACTAAGGAAACTGGTGGCATATCACAAGACTTTGATGCAAGGGATGTGAATCACATGGCAGGTCTCCAAGAAGTACATACACAAGTTAGTAAAGAAGCTACCCAAGATGGACCAATTCCAAGTAATGATAGTTCTGAACAAGATGCGGTCCAAGAAAATGCATCTGTACAAGATACAGTTGAAGATCCAAGAGGATTGAAAAAGAAAAGAGGTCCAACCAAAATGAAGAAAGTTGCTATGGACCCTGAGAGTCGGATTCAAGTTCAATTTAACAGCTTGGGTGAACCATATGGAGAGGGGTCAATAAGCTTGTCATCTTTTTTGGGCCCTCTTGTACGAGAGCATGTACCTGTAACACTAGAAGATTGGAGGAACCTTGGTGATGACCTTAAAGTACCATTATGGGAAGAAGTTCAGGCAAGATACATCTTGGATGAAGAATGGCAAAAAGATGTCATATTTAAGTCGATGGGATGCCTTTGGAGGGCCTCAAAATCTAGATTAGTTCATCAAATACAAGCAGCAAAGAACAAACAAGAAAGACTTCGGCTGAAACCAAACAACATACCAACTTTAGCAATTTGGAAGAAGTTTGTCAAGACAAAAACAAGTCCAACATTTAAGGCTATAAGTGACAAGTACAAGGCATTGAGGCGTAAACAAGTACCACACACATGCAGTCGCAAGGGAATGGTTCGATTAGCAGCTGATATGAAAAGAGATAGTGCCAACCCATCTTCAGTGTCAAGGGTTAAAGTTTGGATCAAATCTCGCACAAAAAAAGATGGTACACCTGTGAATACAACAGTTGGTGAAACTATTGAGAAGTTAAGAGAAGTTGAAAGTAATTCACCCTCATCCTCAACAACTAATGTGAGAGAAGATGCTCTTTCCCAAGTATTAGGACAAGATAAACCTGGACGATTAAGAGGAATGGGAAGAGGAGTTACTATAAGCAAATTAGCCTTCTTACAGTCTAGGGACAAGCATGTGCTCCAGCTAGAAGAGCAACACACTGATATGCGAAGTAGAATCAAGCATTTGGAGAGCTTAGTCCATAAATTAATTGGACATCATGAGACAATGCAAAATGAGGAAGATAAAAATGAGCAAAATGGGTCTCAAGTTGACAAGACTTCTCCAGTGAGTATGAGCCCCAAATCTCTAGACAAGTGCAAGCTTTTAGATTGGTGTGGAATGGATGAGATTGTAGCCGAAGGATGTTGGTGTTCCAGTGATCCGAATGAGCTTGTCAATCATACTCCTCTTGGACCTAATGCAATGAAAGTGAGGGTAGATATTCCAAACAAACCAGAAGCTTTTCTTTGGAGGCCTACACCTAATATGAGTTGTATGGAACAAGCTCAAGGTAAGACAATAGCGTGGCCAGCTGATAAAGTGGTCTTGCAAATCAGTCAGCAATCTGAGAATGAAGATAATATATCTATGCCTTCGAGTAAAAACATGAATTCTATCAAGTGCAAGTTGTTCAATTGGAGTGGAAAAGAGGAAATAGTTGCTGAAGGTCGTTGGTTCTCTAATGATCCAAAGATGCTTGTTAATGATATTCCTCTCGGACCTAATGCCATGATAGTTTGGGTTGATATCCCAACATGTCCTGAATCATTTTTATGGAGACCTACGCCTAACATGACATATATTGAAGATGTTATTGGCACTAAAGTAGCATGGCCTGCTAACAAAGTTGTTTTGGAAAATAGTCCAAACATTGAGGAAGTTGGAAACCTATCATCTCCTTCGAGTGTGAACAAAAACTCCAAGAAAAAGTGCAACTTGTTAGATTTTAGTGGTTCGGGAAAAATAGTTGCAGAAGGATATTGGTCTTCAAGTGATCCAGGCGAGCTTGTTCATTTTGTTCCTTTAGGTCCTAATGCTATGAGAGTTTGGGTTGATATCCCAAGGGTCCCTACTGCATCTCTTTGGCGGCCAACATCTGAGCTACATTGTATTGAAGATGCTATTGGTACTACAATAGCTTGGCCATCTGACAAAGTTGTTATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_23 Transposase_24

Protein Analysis

690

Amino Acids

77.35

Weight (kDa)

8.64

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 209 - 332 7.9e-22 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 609 - 688 3.4e-07 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 14, 95
AciI CCGC 2 cut(s) 191, 1990
AclWI GGATC 5 cut(s) 224, 815, 1277, 1583, 1892
AcoI YGGCCR 3 cut(s) 1430, 1991, 2045
AcsI RAATTY 1 cut(s) 1513
AcuI CTGAAG 2 cut(s) 768, 1587
AfaI GTAC 9 cut(s) 120, 213, 381, 393, 441, 686, 711, 835, 2032
AfiI CCNNNNNNNGG 1 cut(s) 529
AflIII ACRYGT 1 cut(s) 1658
AgsI TTSAA 9 cut(s) 227, 244, 305, 311, 887, 1537, 1709, 1893, 2018
AjnI CCWGG 2 cut(s) 961, 1900
AjuI GAANNNNNNNTTGG 4 cut(s) 1701, 1733, 2010, 2042
AloI GAACNNNNNNTCC 2 cut(s) 1805, 1837
Alw21I GWGCWC 1 cut(s) 1041
Alw26I GTCTC 4 cut(s) 113, 1118, 1170, 1675
AlwI GGATC 5 cut(s) 224, 815, 1277, 1583, 1892
AoxI GGCC 7 cut(s) 370, 531, 1376, 1430, 1736, 1991, 2045
ApaI GGGCCC 1 cut(s) 374
ApeKI GCWGC 2 cut(s) 566, 749
ApoI RAATTY 1 cut(s) 1513
AseI ATTAAT 1 cut(s) 1109
Asp700I GAANNNNTTC 3 cut(s) 456, 588, 1365
AsuHPI GGTGA 5 cut(s) 16, 338, 437, 869, 888
AvaII GGWCC 8 cut(s) 155, 193, 257, 286, 1316, 1622, 1931, 1969
BaeGI GKGCMC 1 cut(s) 374
BaeI ACNNNNGTAYC 2 cut(s) 825, 858
BalI TGGCCA 2 cut(s) 1432, 2047
BanII GRGCYC 2 cut(s) 374, 1202
BarI GAAGNNNNNNTAC 2 cut(s) 976, 1008
BbsI GAAGAC 1 cut(s) 1881
Bbv12I GWGCWC 1 cut(s) 1041
BbvI GCAGC 2 cut(s) 578, 761
BccI CCATC 5 cut(s) 146, 508, 787, 824, 2056
BciT130I CCWGG 2 cut(s) 963, 1902
BcoDI GTCTC 4 cut(s) 113, 1118, 1170, 1675
BfaI CTAG 5 cut(s) 404, 543, 1023, 1046, 1211
BfuAI ACCTGC 2 cut(s) 14, 95
BisI GCNGC 3 cut(s) 567, 750, 1991
BlsI GCNGC 3 cut(s) 568, 751, 1992
Bme1390I CCNGG 2 cut(s) 963, 1902
Bme18I GGWCC 8 cut(s) 155, 193, 257, 286, 1316, 1622, 1931, 1969
BmiI GGNNCC 5 cut(s) 288, 372, 419, 1970, 1971
BmrFI CCNGG 2 cut(s) 963, 1902
BmsI GCATC 8 cut(s) 70, 178, 215, 509, 919, 1587, 1988, 2011
BpiI GAAGAC 1 cut(s) 1881
BpmI CTGGAG 2 cut(s) 1025, 1170
BpuEI CTTGAG 2 cut(s) 1152, 1395
BsaBI GATNNNNATC 1 cut(s) 93
BsaI GGTCTC 3 cut(s) 113, 1170, 1675
BsaJI CCNNGG 2 cut(s) 421, 1964
BsaXI ACNNNNNCTCC 2 cut(s) 1805, 1835
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse1I ACTGG 3 cut(s) 61, 1187, 1278
Bse3DI GCAATG 1 cut(s) 1332
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 963, 1902
BseDI CCNNGG 2 cut(s) 421, 1964
BseGI GGATG 6 cut(s) 94, 484, 524, 902, 1252, 1271
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMI GCAATG 1 cut(s) 1332
BseMII CTCAG 3 cut(s) 282, 1461, 1992
BseNI ACTGG 3 cut(s) 61, 1187, 1278
BseRI GAGGAG 2 cut(s) 1002, 1299
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 2 cut(s) 578, 761
BshFI GGCC 7 cut(s) 372, 533, 1378, 1432, 1738, 1993, 2047
BsiHKAI GWGCWC 1 cut(s) 1041
BslFI GGGAC 2 cut(s) 1040, 1955
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 4 cut(s) 113, 1118, 1170, 1675
BsmFI GGGAC 2 cut(s) 1040, 1955
BsnI GGCC 7 cut(s) 372, 533, 1378, 1432, 1738, 1993, 2047
Bso31I GGTCTC 3 cut(s) 113, 1170, 1675
Bsp120I GGGCCC 1 cut(s) 370
Bsp1286I GDGCHC 3 cut(s) 374, 1041, 1202
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 5 cut(s) 229, 807, 1282, 1588, 1897
BspACI CCGC 2 cut(s) 191, 1990
BspANI GGCC 7 cut(s) 372, 533, 1378, 1432, 1738, 1993, 2047
BspCNI CTCAG 3 cut(s) 283, 1462, 1993
BspHI TCATGA 1 cut(s) 1120
BspLI GGNNCC 5 cut(s) 288, 372, 419, 1970, 1971
BspMI ACCTGC 2 cut(s) 14, 95
BspPI GGATC 5 cut(s) 224, 815, 1277, 1583, 1892
BspQI GCTCTTC 1 cut(s) 1044
BspTNI GGTCTC 3 cut(s) 113, 1170, 1675
BsrDI GCAATG 1 cut(s) 1332
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 3 cut(s) 61, 1187, 1278
BssECI CCNNGG 2 cut(s) 421, 1964
BssMI GATC 5 cut(s) 229, 807, 1282, 1588, 1897
BssT1I CCWWGG 2 cut(s) 421, 1964
Bst2UI CCWGG 2 cut(s) 963, 1902
Bst4CI ACNGT 4 cut(s) 32, 223, 853, 1020
Bst6I CTCTTC 2 cut(s) 979, 1044
BstAPI GCANNNNNTGC 1 cut(s) 1739
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 4 cut(s) 1223, 1434, 1740, 1907
BstDEI CTNAG 5 cut(s) 48, 291, 1096, 1470, 2001
BstF5I GGATG 6 cut(s) 94, 484, 524, 902, 1252, 1271
BstKTI GATC 5 cut(s) 232, 810, 1285, 1591, 1900
BstMAI GTCTC 4 cut(s) 113, 1118, 1170, 1675
BstMBI GATC 5 cut(s) 229, 807, 1282, 1588, 1897
BstMWI GCNNNNNNNGC 3 cut(s) 1051, 1433, 1739
BstNI CCWGG 2 cut(s) 963, 1902
BstNSI RCATGY 4 cut(s) 392, 723, 1037, 1662
BstSCI CCNGG 2 cut(s) 961, 1900
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 578, 761
BstV2I GAAGAC 1 cut(s) 1881
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 7 cut(s) 372, 533, 1378, 1432, 1738, 1993, 2047
BtsCI GGATG 6 cut(s) 94, 484, 524, 902, 1252, 1271
BtsIMutI CAGTG 4 cut(s) 792, 1059, 1194, 1285
BveI ACCTGC 2 cut(s) 14, 95
Cac8I GCNNGC 4 cut(s) 1223, 1434, 1740, 1907
CciI TCATGA 1 cut(s) 1120
Csp6I GTAC 9 cut(s) 119, 212, 380, 392, 440, 685, 710, 834, 2031
CspCI CAANNNNNGTGG 2 cut(s) 1525, 1560
CviQI GTAC 9 cut(s) 119, 212, 380, 392, 440, 685, 710, 834, 2031
DdeI CTNAG 5 cut(s) 48, 291, 1096, 1470, 2001
DpnI GATC 5 cut(s) 231, 809, 1284, 1590, 1899
DpnII GATC 5 cut(s) 229, 807, 1282, 1588, 1897
EaeI YGGCCR 3 cut(s) 1430, 1991, 2045
Eam1104I CTCTTC 2 cut(s) 979, 1044
EarI CTCTTC 2 cut(s) 979, 1044
Eco130I CCWWGG 2 cut(s) 421, 1964
Eco147I AGGCCT 1 cut(s) 1378
Eco24I GRGCYC 2 cut(s) 374, 1202
Eco31I GGTCTC 3 cut(s) 113, 1170, 1675
Eco32I GATATC 2 cut(s) 1651, 1960
Eco47I GGWCC 8 cut(s) 155, 193, 257, 286, 1316, 1622, 1931, 1969
Eco57I CTGAAG 2 cut(s) 768, 1587
EcoO109I RGGNCCY 4 cut(s) 371, 531, 1931, 1969
EcoRI GAATTC 1 cut(s) 1513
EcoRII CCWGG 2 cut(s) 961, 1900
EcoRV GATATC 2 cut(s) 1651, 1960
EcoT14I CCWWGG 2 cut(s) 421, 1964
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 374, 1202
ErhI CCWWGG 2 cut(s) 421, 1964
FalI AAGNNNNNCTT 8 cut(s) 573, 605, 918, 950, 1353, 1385, 1823, 1855
FaqI GGGAC 2 cut(s) 1040, 1955
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 567, 750, 1991
FokI GGATG 6 cut(s) 101, 491, 531, 889, 1259, 1278
FriOI GRGCYC 2 cut(s) 374, 1202
Fsp4HI GCNGC 3 cut(s) 567, 750, 1991
FspBI CTAG 5 cut(s) 404, 543, 1023, 1046, 1211
GluI GCNGC 3 cut(s) 567, 750, 1991
GsuI CTGGAG 2 cut(s) 1025, 1170
HaeIII GGCC 7 cut(s) 372, 533, 1378, 1432, 1738, 1993, 2047
HincII GTYRAC 1 cut(s) 1174
HindII GTYRAC 1 cut(s) 1174
HindIII AAGCTT 3 cut(s) 352, 1223, 1362
HinfI GANTC 5 cut(s) 94, 295, 301, 1077, 1667
HphI GGTGA 5 cut(s) 16, 338, 437, 869, 888
Hpy166II GTNNAC 5 cut(s) 329, 704, 836, 1174, 1813
Hpy188I TCNGA 7 cut(s) 181, 300, 1287, 1471, 1622, 2002, 2053
Hpy188III TCNNGA 6 cut(s) 543, 643, 1121, 1211, 1664, 1860
Hpy8I GTNNAC 5 cut(s) 329, 704, 836, 1174, 1813
HpyAV CCTTC 6 cut(s) 1021, 1256, 1506, 1562, 1812, 1871
HpyCH4III ACNGT 4 cut(s) 32, 223, 853, 1020
HpyF10VI GCNNNNNNNGC 3 cut(s) 1051, 1433, 1739
HpyF3I CTNAG 5 cut(s) 48, 291, 1096, 1470, 2001
KflI GGGWCCC 1 cut(s) 1969
Kzo9I GATC 5 cut(s) 229, 807, 1282, 1588, 1897
LguI GCTCTTC 1 cut(s) 1044
LmnI GCTCC 1 cut(s) 1044
Lsp1109I GCAGC 2 cut(s) 578, 761
LweI GCATC 8 cut(s) 70, 178, 215, 509, 919, 1587, 1988, 2011
MaeI CTAG 5 cut(s) 404, 543, 1023, 1046, 1211
MaeIII GTNAC 4 cut(s) 26, 397, 677, 991
MalI GATC 5 cut(s) 231, 809, 1284, 1590, 1899
MboI GATC 5 cut(s) 229, 807, 1282, 1588, 1897
MfeI CAATTG 1 cut(s) 1537
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 3 cut(s) 374, 1041, 1202
MlsI TGGCCA 2 cut(s) 1432, 2047
MluCI AATT 9 cut(s) 159, 311, 624, 892, 1004, 1106, 1110, 1513, 1537
MluNI TGGCCA 2 cut(s) 1432, 2047
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 4 cut(s) 278, 284, 683, 1765
Mox20I TGGCCA 2 cut(s) 1432, 2047
Mph1103I ATGCAT 1 cut(s) 208
MroXI GAANNNNTTC 3 cut(s) 456, 588, 1365
MscI TGGCCA 2 cut(s) 1432, 2047
MseI TTAA 9 cut(s) 315, 435, 507, 666, 798, 875, 971, 1109, 1605
MslI CAYNNNNRTG 3 cut(s) 718, 1064, 1675
Msp20I TGGCCA 2 cut(s) 1432, 2047
MspA1I CMGCKG 2 cut(s) 752, 1436
MspR9I CCNGG 2 cut(s) 963, 1902
MunI CAATTG 1 cut(s) 1537
MvaI CCWGG 2 cut(s) 963, 1902
MwoI GCNNNNNNNGC 3 cut(s) 1051, 1433, 1739
NdeI CATATG 1 cut(s) 334
NdeII GATC 5 cut(s) 229, 807, 1282, 1588, 1897
NlaIV GGNNCC 5 cut(s) 288, 372, 419, 1970, 1971
NmuCI GTSAC 2 cut(s) 26, 677
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 4 cut(s) 392, 723, 1037, 1662
PagI TCATGA 1 cut(s) 1120
PceI AGGCCT 1 cut(s) 1378
PciI ACATGT 1 cut(s) 1658
PciSI GCTCTTC 1 cut(s) 1044
PdmI GAANNNNTTC 3 cut(s) 456, 588, 1365
PfeI GAWTC 4 cut(s) 94, 301, 1077, 1667
PkrI GCNGC 3 cut(s) 568, 751, 1992
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PpuMI RGGWCCY 2 cut(s) 1931, 1969
PscI ACATGT 1 cut(s) 1658
PshBI ATTAAT 1 cut(s) 1109
Psp5II RGGWCCY 2 cut(s) 1931, 1969
Psp6I CCWGG 2 cut(s) 961, 1900
PspGI CCWGG 2 cut(s) 961, 1900
PspN4I GGNNCC 5 cut(s) 288, 372, 419, 1970, 1971
PspOMI GGGCCC 1 cut(s) 370
PspPPI RGGWCCY 2 cut(s) 1931, 1969
PsrI GAACNNNNNNTAC 2 cut(s) 160, 192
PsuI RGATCY 1 cut(s) 229
PvuII CAGCTG 2 cut(s) 752, 1436
RsaI GTAC 9 cut(s) 120, 213, 381, 393, 441, 686, 711, 835, 2032
RsaNI GTAC 9 cut(s) 119, 212, 380, 392, 440, 685, 710, 834, 2031
RseI CAYNNNNRTG 3 cut(s) 718, 1064, 1675
SapI GCTCTTC 1 cut(s) 1044
SaqAI TTAA 9 cut(s) 315, 435, 507, 666, 798, 875, 971, 1109, 1605
SatI GCNGC 3 cut(s) 567, 750, 1991
Sau3AI GATC 5 cut(s) 229, 807, 1282, 1588, 1897
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 2 cut(s) 963, 1902
SduI GDGCHC 3 cut(s) 374, 1041, 1202
SfaNI GCATC 8 cut(s) 70, 178, 215, 509, 919, 1587, 1988, 2011
SinI GGWCC 8 cut(s) 155, 193, 257, 286, 1316, 1622, 1931, 1969
SmiMI CAYNNNNRTG 3 cut(s) 718, 1064, 1675
SmlI CTYRAG 2 cut(s) 1167, 1410
SmoI CTYRAG 2 cut(s) 1167, 1410
Sse9I AATT 9 cut(s) 159, 311, 624, 892, 1004, 1106, 1110, 1513, 1537
SseBI AGGCCT 1 cut(s) 1378
SsiI CCGC 2 cut(s) 191, 1990
SspMI CTAG 5 cut(s) 404, 543, 1023, 1046, 1211
StuI AGGCCT 1 cut(s) 1378
StyD4I CCNGG 2 cut(s) 961, 1900
StyI CCWWGG 2 cut(s) 421, 1964
TaaI ACNGT 4 cut(s) 32, 223, 853, 1020
TaqI TCGA 4 cut(s) 512, 742, 1499, 1805
TasI AATT 9 cut(s) 159, 311, 624, 892, 1004, 1106, 1110, 1513, 1537
TatI WGTACW 3 cut(s) 118, 211, 684
TauI GCSGC 1 cut(s) 1993
TfiI GAWTC 4 cut(s) 94, 301, 1077, 1667
Tru1I TTAA 9 cut(s) 315, 435, 507, 666, 798, 875, 971, 1109, 1605
Tru9I TTAA 9 cut(s) 315, 435, 507, 666, 798, 875, 971, 1109, 1605
TscAI CASTG 4 cut(s) 792, 1066, 1194, 1285
TseFI GTSAC 2 cut(s) 26, 677
TseI GCWGC 2 cut(s) 566, 749
Tsp45I GTSAC 2 cut(s) 26, 677
TspDTI ATGAA 8 cut(s) 284, 495, 542, 773, 1343, 1491, 1526, 1904
TspRI CASTG 4 cut(s) 792, 1066, 1194, 1285
VpaK11BI GGWCC 8 cut(s) 155, 193, 257, 286, 1316, 1622, 1931, 1969
VspI ATTAAT 1 cut(s) 1109
XapI RAATTY 1 cut(s) 1513
XbaI TCTAGA 2 cut(s) 542, 1210
XceI RCATGY 4 cut(s) 392, 723, 1037, 1662
XcmI CCANNNNNNNNNTGG 1 cut(s) 1109
XmnI GAANNNNTTC 3 cut(s) 456, 588, 1365
XspI CTAG 5 cut(s) 404, 543, 1023, 1046, 1211
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.