Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002037.1

Orthogroup ID

OG0000089

Physical Location & Seq

Genomic Coordinates Reverse (-)

119112 .. 127384

Gene Structure 8273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002037.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

atgagaagttcacacaagaggaaacatgctcaggaagccacacaagcatcaaaggtttctcatgtaggggataagaatatacaagttagtccagaactatgccaagatacattaaaaccatgtgatgagagtccagaacctaacatccaacaccactcaccttccacaaaagaagtggtacaagaagatgcaccaccatcacaagattcagctgtagacccgagaggacttaagaaaactaggggtccaacgaaaatgaaagatattgctgtggagcctggaagtcgaattcatgttgaatatactgataaaggtgaaccatgtggtgagggctcagttagtttgtcttcttatttaggcccacttgtacgagaacacgtacctgtaacactccacaattggaggaagcttggtgatgacataaaagtagttttgtggaaatcaattcagattcaacaaagtgaggaagaggagaaaacatctccaatgagcgtcaacaccaactcattgaataagtgcaagctactagattggagtggaacagaggacattgttgcagaaggtcgttgggtttcaagtgatccagaagagtctgtcaatgaaattcccttgggacctaatgcaatgaaagtcttggttgatatctcacataaaccagatgcttttctttggaggcctacatctaatatgttttgttttcaagatgctcaagatgaaatagttgcagaaggacgttggcattcaagtgatccaaaagcgttagtaaatggtattcctattggacctaatgccatgatagtttgggtagatattccaaagaatcatgaagcgtttttatggaggcctacaatagatatgacatgcattgaagatgccgtgaattctgctatagcatggcctgctaacaaagttgttttggaaaagatatcagaaagtcaagttggtgaaattgcatcctctccaagtgtcaactccaaatcaaagaaaaggtgccagttgttggatgttagtggatcggggcaaatagttgctgaaggacgttggtcctcaagtgatccagatcaggttgttcattttgttcccttggggcctaatgctatgagagtttggatagatacaccgaaagtcccaactgcatccctttggaggccatcatttgagctggaaattattgaagatgctattggtactacaatagcatggccagcagacaaagtgccatgggccaggaacttgatgaagaacaagcagcgccgctggtcatcctccgatggcaagatttgggcgagttgccagaaaaacgagctgattattaaggctcccgaaaaggcgagaacggggggtggaagatggtttgcagaagattgctcaagaacagcggctatggattcatttgagccctatggaaatggaacaaatggatcaaatggagagaatggcgaaaatgtagaaaacgacgcaaatggagaaaacagggcagatggaaacggggtagagcatgcattgccacccccacccctgttatcccaccagatgttgttccattgcgtgctcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

519

Amino Acids

57.29

Weight (kDa)

5.54

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42700
fragaria_vesca	FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica	MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis	pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis	RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata	RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora	Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii	Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa	Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha	Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana	Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	990
AccB7I	CCANNNNNTGG	1 cut(s)	1000
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	2 cut(s)	1255, 1379
AclWI	GGATC	5 cut(s)	575, 743, 1021, 1049, 1429
AcoI	YGGCCR	1 cut(s)	1202
AcsI	RAATTY	3 cut(s)	288, 603, 880
AcuI	CTGAAG	1 cut(s)	1053
AfaI	GTAC	4 cut(s)	180, 369, 381, 1189
AfiI	CCNNNNNNNGG	2 cut(s)	1000, 1146
AflII	CTTAAG	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	8 cut(s)	299, 455, 511, 576, 701, 744, 869, 1175
AjnI	CCWGG	2 cut(s)	277, 1226
AjuI	GAANNNNNNNTTGG	4 cut(s)	924, 956, 1167, 1199
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
AluBI	AGCT	5 cut(s)	212, 409, 523, 1162, 1306
AluI	AGCT	5 cut(s)	212, 409, 523, 1162, 1306
Alw21I	GWGCWC	1 cut(s)	1554
AlwI	GGATC	5 cut(s)	575, 743, 1021, 1049, 1429
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	8 cut(s)	358, 674, 842, 896, 1088, 1148, 1202, 1224
ApeKI	GCWGC	1 cut(s)	1249
ApoI	RAATTY	3 cut(s)	288, 603, 880
AspLEI	GCGC	1 cut(s)	1254
AspS9I	GGNCC	7 cut(s)	245, 359, 614, 782, 1044, 1088, 1224
AsuHPI	GGTGA	5 cut(s)	150, 326, 338, 425, 956
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	4 cut(s)	245, 614, 782, 1044
BalI	TGGCCA	1 cut(s)	1204
BanI	GGYRCC	1 cut(s)	990
BanII	GRGCYC	2 cut(s)	335, 1401
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	1554
BbvI	GCAGC	1 cut(s)	1261
BccI	CCATC	5 cut(s)	205, 1159, 1265, 1344, 1475
BceAI	ACGGC	1 cut(s)	860
BciT130I	CCWGG	2 cut(s)	279, 1228
BfaI	CTAG	2 cut(s)	240, 527
BfmI	CTRYAG	2 cut(s)	213, 888
BfoI	RGCGCY	1 cut(s)	1255
BfrI	CTTAAG	1 cut(s)	230
BisI	GCNGC	3 cut(s)	1250, 1255, 1380
BlsI	GCNGC	3 cut(s)	1251, 1256, 1381
Bme1390I	CCNGG	2 cut(s)	279, 1228
Bme18I	GGWCC	4 cut(s)	245, 614, 782, 1044
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	7 cut(s)	245, 359, 614, 782, 1044, 1088, 1224
BmiI	GGNNCC	6 cut(s)	246, 276, 615, 992, 1089, 1320
BmrFI	CCNGG	2 cut(s)	279, 1228
BmsI	GCATC	8 cut(s)	56, 178, 649, 694, 862, 962, 1145, 1168
BoxI	GACNNNNGTC	1 cut(s)	1042
BpiI	GAAGAC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	4 cut(s)	693, 1033, 1354, 1538
BsaAI	YACGTR	1 cut(s)	379
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaJI	CCNNGG	3 cut(s)	609, 1083, 1220
Bsc4I	CCNNNNNNNGG	2 cut(s)	1000, 1146
Bse1I	ACTGG	1 cut(s)	994
Bse3DI	GCAATG	3 cut(s)	630, 1502, 1543
Bse8I	GATNNNNATC	1 cut(s)	1059
BseBI	CCWGG	2 cut(s)	279, 1228
BseDI	CCNNGG	3 cut(s)	609, 1083, 1220
BseGI	GGATG	5 cut(s)	144, 953, 1009, 1136, 1262
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	2 cut(s)	1000, 1146
BseMI	GCAATG	3 cut(s)	630, 1502, 1543
BseMII	CTCAG	2 cut(s)	44, 348
BseNI	ACTGG	1 cut(s)	994
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	1261
BshFI	GGCC	8 cut(s)	360, 676, 844, 898, 1090, 1150, 1204, 1226
BshNI	GGYRCC	1 cut(s)	990
BsiHKAI	GWGCWC	1 cut(s)	1554
BsiHKCI	CYCGRG	1 cut(s)	220
BslFI	GGGAC	2 cut(s)	627, 1112
BslI	CCNNNNNNNGG	2 cut(s)	1000, 1146
BsmFI	GGGAC	2 cut(s)	627, 1112
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	8 cut(s)	360, 676, 844, 898, 1090, 1150, 1204, 1226
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	3 cut(s)	335, 1401, 1554
Bsp143I	GATC	6 cut(s)	580, 748, 1013, 1054, 1060, 1421
Bsp19I	CCATGG	1 cut(s)	1220
BspACI	CCGC	2 cut(s)	1255, 1379
BspANI	GGCC	8 cut(s)	360, 676, 844, 898, 1090, 1150, 1204, 1226
BspCNI	CTCAG	2 cut(s)	43, 347
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	6 cut(s)	246, 276, 615, 992, 1089, 1320
BspPI	GGATC	5 cut(s)	575, 743, 1021, 1049, 1429
BspT107I	GGYRCC	1 cut(s)	990
BspTI	CTTAAG	1 cut(s)	230
BsrDI	GCAATG	3 cut(s)	630, 1502, 1543
BsrI	ACTGG	1 cut(s)	994
BssECI	CCNNGG	3 cut(s)	609, 1083, 1220
BssMI	GATC	6 cut(s)	580, 748, 1013, 1054, 1060, 1421
BssT1I	CCWWGG	3 cut(s)	609, 1083, 1220
Bst2UI	CCWGG	2 cut(s)	279, 1228
Bst6I	CTCTTC	2 cut(s)	462, 582
BstAFI	CTTAAG	1 cut(s)	230
BstAPI	GCANNNNNTGC	2 cut(s)	899, 1504
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	5 cut(s)	521, 900, 1206, 1500, 1550
BstDEI	CTNAG	2 cut(s)	30, 334
BstDSI	CCRYGG	1 cut(s)	1220
BstF5I	GGATG	5 cut(s)	144, 953, 1009, 1136, 1262
BstH2I	RGCGCY	1 cut(s)	1255
BstHHI	GCGC	1 cut(s)	1254
BstKTI	GATC	6 cut(s)	583, 751, 1016, 1057, 1063, 1424
BstMBI	GATC	6 cut(s)	580, 748, 1013, 1054, 1060, 1421
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 44, 899, 1205, 1504
BstNI	CCWGG	2 cut(s)	279, 1228
BstNSI	RCATGY	3 cut(s)	29, 864, 1502
BstPAI	GACNNNNGTC	1 cut(s)	1042
BstSCI	CCNGG	2 cut(s)	277, 1226
BstSFI	CTRYAG	2 cut(s)	213, 888
BstV1I	GCAGC	1 cut(s)	1261
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	8 cut(s)	360, 676, 844, 898, 1090, 1150, 1204, 1226
BtgI	CCRYGG	1 cut(s)	1220
BtsCI	GGATG	5 cut(s)	144, 953, 1009, 1136, 1262
Cac8I	GCNNGC	5 cut(s)	521, 900, 1206, 1500, 1550
CciI	TCATGA	1 cut(s)	823
CfoI	GCGC	1 cut(s)	1254
Cfr13I	GGNCC	7 cut(s)	245, 359, 614, 782, 1044, 1088, 1224
CseI	GACGC	2 cut(s)	481, 1466
Csp6I	GTAC	4 cut(s)	179, 368, 380, 1188
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviQI	GTAC	4 cut(s)	179, 368, 380, 1188
DdeI	CTNAG	2 cut(s)	30, 334
DpnI	GATC	6 cut(s)	582, 750, 1015, 1056, 1062, 1423
DpnII	GATC	6 cut(s)	580, 748, 1013, 1054, 1060, 1421
EaeI	YGGCCR	1 cut(s)	1202
Eam1104I	CTCTTC	2 cut(s)	462, 582
EarI	CTCTTC	2 cut(s)	462, 582
Eco130I	CCWWGG	3 cut(s)	609, 1083, 1220
Eco147I	AGGCCT	2 cut(s)	676, 844
Eco24I	GRGCYC	2 cut(s)	335, 1401
Eco32I	GATATC	2 cut(s)	643, 927
Eco47I	GGWCC	4 cut(s)	245, 614, 782, 1044
Eco57I	CTGAAG	1 cut(s)	1053
Eco88I	CYCGRG	1 cut(s)	220
EcoO109I	RGGNCCY	2 cut(s)	614, 1088
EcoRI	GAATTC	2 cut(s)	288, 880
EcoRII	CCWGG	2 cut(s)	277, 1226
EcoRV	GATATC	2 cut(s)	643, 927
EcoT14I	CCWWGG	3 cut(s)	609, 1083, 1220
EcoT22I	ATGCAT	2 cut(s)	866, 1504
EcoT38I	GRGCYC	2 cut(s)	335, 1401
ErhI	CCWWGG	3 cut(s)	609, 1083, 1220
FaqI	GGGAC	2 cut(s)	627, 1112
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	1250, 1255, 1380
FokI	GGATG	5 cut(s)	131, 940, 1016, 1123, 1249
FriOI	GRGCYC	2 cut(s)	335, 1401
Fsp4HI	GCNGC	3 cut(s)	1250, 1255, 1380
FspBI	CTAG	2 cut(s)	240, 527
GlaI	GCGC	1 cut(s)	1253
GluI	GCNGC	3 cut(s)	1250, 1255, 1380
HaeII	RGCGCY	1 cut(s)	1255
HaeIII	GGCC	8 cut(s)	360, 676, 844, 898, 1090, 1150, 1204, 1226
HgaI	GACGC	2 cut(s)	481, 1466
HhaI	GCGC	1 cut(s)	1254
Hin6I	GCGC	1 cut(s)	1252
HinP1I	GCGC	1 cut(s)	1252
HincII	GTYRAC	2 cut(s)	496, 970
HindII	GTYRAC	2 cut(s)	496, 970
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	6 cut(s)	130, 206, 451, 590, 820, 1388
HphI	GGTGA	5 cut(s)	150, 326, 338, 425, 956
Hpy166II	GTNNAC	5 cut(s)	11, 217, 317, 496, 970
Hpy188I	TCNGA	3 cut(s)	450, 931, 1270
Hpy8I	GTNNAC	5 cut(s)	11, 217, 317, 496, 970
Hpy99I	CGWCG	1 cut(s)	1460
HpyAV	CCTTC	4 cut(s)	171, 554, 722, 1028
HpyCH4IV	ACGT	3 cut(s)	378, 733, 1039
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 44, 899, 1205, 1504
HpyF3I	CTNAG	2 cut(s)	30, 334
HpySE526I	ACGT	3 cut(s)	378, 733, 1039
HspAI	GCGC	1 cut(s)	1252
Kzo9I	GATC	6 cut(s)	580, 748, 1013, 1054, 1060, 1421
LmnI	GCTCC	2 cut(s)	274, 1324
Lsp1109I	GCAGC	1 cut(s)	1261
LweI	GCATC	8 cut(s)	56, 178, 649, 694, 862, 962, 1145, 1168
MaeI	CTAG	2 cut(s)	240, 527
MaeII	ACGT	3 cut(s)	378, 733, 1039
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	6 cut(s)	582, 750, 1015, 1056, 1062, 1423
MboI	GATC	6 cut(s)	580, 748, 1013, 1054, 1060, 1421
MboII	GAAGA	9 cut(s)	197, 339, 479, 599, 881, 1187, 1252, 1359, 1373
MfeI	CAATTG	1 cut(s)	397
MhlI	GDGCHC	3 cut(s)	335, 1401, 1554
MlsI	TGGCCA	1 cut(s)	1204
MluCI	AATT	7 cut(s)	288, 397, 444, 603, 880, 948, 1167
MluNI	TGGCCA	1 cut(s)	1204
MlyI	GAGTC	2 cut(s)	139, 599
MmeI	TCCRAC	3 cut(s)	172, 272, 981
Mox20I	TGGCCA	1 cut(s)	1204
Mph1103I	ATGCAT	2 cut(s)	866, 1504
MscI	TGGCCA	1 cut(s)	1204
MseI	TTAA	3 cut(s)	113, 231, 1314
MslI	CAYNNNNRTG	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	1204
MspA1I	CMGCKG	3 cut(s)	212, 1257, 1379
MspCI	CTTAAG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	279, 1228
MunI	CAATTG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	2 cut(s)	279, 1228
MwoI	GCNNNNNNNGC	5 cut(s)	35, 44, 899, 1205, 1504
NcoI	CCATGG	1 cut(s)	1220
NdeII	GATC	6 cut(s)	580, 748, 1013, 1054, 1060, 1421
NlaIV	GGNNCC	6 cut(s)	246, 276, 615, 992, 1089, 1320
NsiI	ATGCAT	2 cut(s)	866, 1504
NspI	RCATGY	3 cut(s)	29, 864, 1502
PaeI	GCATGC	1 cut(s)	1502
PagI	TCATGA	1 cut(s)	823
PceI	AGGCCT	2 cut(s)	676, 844
PctI	GAATGC	1 cut(s)	739
PfeI	GAWTC	4 cut(s)	206, 451, 820, 1388
PflMI	CCANNNNNTGG	1 cut(s)	1000
PkrI	GCNGC	3 cut(s)	1251, 1256, 1381
PleI	GAGTC	2 cut(s)	138, 598
PpsI	GAGTC	2 cut(s)	138, 598
Ppu21I	YACGTR	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	614
PshAI	GACNNNNGTC	1 cut(s)	1042
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	277, 1226
PspGI	CCWGG	2 cut(s)	277, 1226
PspN4I	GGNNCC	6 cut(s)	246, 276, 615, 992, 1089, 1320
PspPI	GGNCC	7 cut(s)	245, 359, 614, 782, 1044, 1088, 1224
PspPPI	RGGWCCY	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	4 cut(s)	180, 369, 381, 1189
RsaNI	GTAC	4 cut(s)	179, 368, 380, 1188
RseI	CAYNNNNRTG	1 cut(s)	744
SaqAI	TTAA	3 cut(s)	113, 231, 1314
SatI	GCNGC	3 cut(s)	1250, 1255, 1380
Sau3AI	GATC	6 cut(s)	580, 748, 1013, 1054, 1060, 1421
Sau96I	GGNCC	7 cut(s)	245, 359, 614, 782, 1044, 1088, 1224
SchI	GAGTC	2 cut(s)	139, 599
ScrFI	CCNGG	2 cut(s)	279, 1228
SduI	GDGCHC	3 cut(s)	335, 1401, 1554
SfaNI	GCATC	8 cut(s)	56, 178, 649, 694, 862, 962, 1145, 1168
SfcI	CTRYAG	2 cut(s)	213, 888
SinI	GGWCC	4 cut(s)	245, 614, 782, 1044
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	5 cut(s)	230, 708, 1048, 1369, 1553
SmoI	CTYRAG	5 cut(s)	230, 708, 1048, 1369, 1553
SphI	GCATGC	1 cut(s)	1502
Sse9I	AATT	7 cut(s)	288, 397, 444, 603, 880, 948, 1167
SseBI	AGGCCT	2 cut(s)	676, 844
SsiI	CCGC	2 cut(s)	1255, 1379
SspMI	CTAG	2 cut(s)	240, 527
StuI	AGGCCT	2 cut(s)	676, 844
StyD4I	CCNGG	2 cut(s)	277, 1226
StyI	CCWWGG	3 cut(s)	609, 1083, 1220
TaiI	ACGT	3 cut(s)	381, 736, 1042
TaqI	TCGA	1 cut(s)	286
TasI	AATT	7 cut(s)	288, 397, 444, 603, 880, 948, 1167
TauI	GCSGC	2 cut(s)	1257, 1382
TfiI	GAWTC	4 cut(s)	206, 451, 820, 1388
Tru1I	TTAA	3 cut(s)	113, 231, 1314
Tru9I	TTAA	3 cut(s)	113, 231, 1314
TseI	GCWGC	1 cut(s)	1249
TspDTI	ATGAA	9 cut(s)	272, 281, 615, 641, 729, 840, 1061, 1253, 1380
Van91I	CCANNNNNTGG	1 cut(s)	1000
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	4 cut(s)	245, 614, 782, 1044
XapI	RAATTY	3 cut(s)	288, 603, 880
XceI	RCATGY	3 cut(s)	29, 864, 1502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	2 cut(s)	240, 527
Zsp2I	ATGCAT	2 cut(s)	866, 1504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.