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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 14, 95 |
| AciI | CCGC | 1 cut(s) | 191 |
| AclWI | GGATC | 1 cut(s) | 224 |
| AfaI | GTAC | 4 cut(s) | 120, 381, 393, 441 |
| AgeI | ACCGGT | 1 cut(s) | 56 |
| AgsI | TTSAA | 4 cut(s) | 227, 244, 305, 311 |
| AluBI | AGCT | 3 cut(s) | 143, 321, 354 |
| AluI | AGCT | 3 cut(s) | 143, 321, 354 |
| Alw26I | GTCTC | 1 cut(s) | 113 |
| AlwI | GGATC | 1 cut(s) | 224 |
| AoxI | GGCC | 1 cut(s) | 370 |
| ApaI | GGGCCC | 1 cut(s) | 374 |
| ApeKI | GCWGC | 1 cut(s) | 30 |
| AsiGI | ACCGGT | 1 cut(s) | 56 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 456 |
| AspS9I | GGNCC | 6 cut(s) | 155, 193, 257, 286, 370, 371 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 338, 437 |
| AvaII | GGWCC | 4 cut(s) | 155, 193, 257, 286 |
| BaeGI | GKGCMC | 1 cut(s) | 374 |
| BanII | GRGCYC | 1 cut(s) | 374 |
| BbvI | GCAGC | 1 cut(s) | 42 |
| BccI | CCATC | 1 cut(s) | 146 |
| BcoDI | GTCTC | 1 cut(s) | 113 |
| BfuAI | ACCTGC | 2 cut(s) | 14, 95 |
| BisI | GCNGC | 1 cut(s) | 31 |
| BlsI | GCNGC | 1 cut(s) | 32 |
| Bme18I | GGWCC | 4 cut(s) | 155, 193, 257, 286 |
| BmgT120I | GGNCC | 6 cut(s) | 155, 193, 257, 286, 370, 371 |
| BmiI | GGNNCC | 3 cut(s) | 288, 372, 419 |
| BmsI | GCATC | 3 cut(s) | 70, 178, 215 |
| BsaBI | GATNNNNATC | 1 cut(s) | 93 |
| BsaI | GGTCTC | 1 cut(s) | 113 |
| BsaJI | CCNNGG | 1 cut(s) | 421 |
| BsaWI | WCCGGW | 1 cut(s) | 56 |
| Bse118I | RCCGGY | 1 cut(s) | 56 |
| Bse8I | GATNNNNATC | 1 cut(s) | 93 |
| BseDI | CCNNGG | 1 cut(s) | 421 |
| BseGI | GGATG | 1 cut(s) | 94 |
| BseJI | GATNNNNATC | 1 cut(s) | 93 |
| BseMII | CTCAG | 1 cut(s) | 282 |
| BseSI | GKGCMC | 1 cut(s) | 374 |
| BseXI | GCAGC | 1 cut(s) | 42 |
| BshFI | GGCC | 1 cut(s) | 372 |
| BshTI | ACCGGT | 1 cut(s) | 56 |
| BsiSI | CCGG | 1 cut(s) | 57 |
| BsmAI | GTCTC | 1 cut(s) | 113 |
| BsnI | GGCC | 1 cut(s) | 372 |
| Bso31I | GGTCTC | 1 cut(s) | 113 |
| Bsp120I | GGGCCC | 1 cut(s) | 370 |
| Bsp1286I | GDGCHC | 1 cut(s) | 374 |
| Bsp143I | GATC | 1 cut(s) | 229 |
| BspACI | CCGC | 1 cut(s) | 191 |
| BspANI | GGCC | 1 cut(s) | 372 |
| BspCNI | CTCAG | 1 cut(s) | 283 |
| BspLI | GGNNCC | 3 cut(s) | 288, 372, 419 |
| BspMI | ACCTGC | 2 cut(s) | 14, 95 |
| BspPI | GGATC | 1 cut(s) | 224 |
| BspTNI | GGTCTC | 1 cut(s) | 113 |
| BsrFI | RCCGGY | 1 cut(s) | 56 |
| BssAI | RCCGGY | 1 cut(s) | 56 |
| BssECI | CCNNGG | 1 cut(s) | 421 |
| BssMI | GATC | 1 cut(s) | 229 |
| BssT1I | CCWWGG | 1 cut(s) | 421 |
| Bst4CI | ACNGT | 1 cut(s) | 223 |
| BstDEI | CTNAG | 2 cut(s) | 48, 291 |
| BstF5I | GGATG | 1 cut(s) | 94 |
| BstKTI | GATC | 1 cut(s) | 232 |
| BstMAI | GTCTC | 1 cut(s) | 113 |
| BstMBI | GATC | 1 cut(s) | 229 |
| BstNSI | RCATGY | 1 cut(s) | 392 |
| BstSLI | GKGCMC | 1 cut(s) | 374 |
| BstV1I | GCAGC | 1 cut(s) | 42 |
| BstX2I | RGATCY | 1 cut(s) | 229 |
| BstYI | RGATCY | 1 cut(s) | 229 |
| BsuRI | GGCC | 1 cut(s) | 372 |
| BtsCI | GGATG | 1 cut(s) | 94 |
| BveI | ACCTGC | 2 cut(s) | 14, 95 |
| Cfr10I | RCCGGY | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 6 cut(s) | 155, 193, 257, 286, 370, 371 |
| Csp6I | GTAC | 4 cut(s) | 119, 380, 392, 440 |
| CspAI | ACCGGT | 1 cut(s) | 56 |
| CviAII | CATG | 2 cut(s) | 100, 389 |
| CviJI | RGCY | 4 cut(s) | 143, 321, 354, 372 |
| CviKI_1 | RGCY | 4 cut(s) | 143, 321, 354, 372 |
| CviQI | GTAC | 4 cut(s) | 119, 380, 392, 440 |
| DdeI | CTNAG | 2 cut(s) | 48, 291 |
| DpnI | GATC | 1 cut(s) | 231 |
| DpnII | GATC | 1 cut(s) | 229 |
| Eco130I | CCWWGG | 1 cut(s) | 421 |
| Eco24I | GRGCYC | 1 cut(s) | 374 |
| Eco31I | GGTCTC | 1 cut(s) | 113 |
| Eco47I | GGWCC | 4 cut(s) | 155, 193, 257, 286 |
| EcoO109I | RGGNCCY | 1 cut(s) | 371 |
| EcoT14I | CCWWGG | 1 cut(s) | 421 |
| EcoT22I | ATGCAT | 1 cut(s) | 208 |
| EcoT38I | GRGCYC | 1 cut(s) | 374 |
| ErhI | CCWWGG | 1 cut(s) | 421 |
| FaeI | CATG | 2 cut(s) | 103, 392 |
| FaiI | YATR | 9 cut(s) | 45, 101, 123, 284, 334, 336, 390, 448, 466 |
| FatI | CATG | 2 cut(s) | 99, 388 |
| FauNDI | CATATG | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 1 cut(s) | 31 |
| FokI | GGATG | 1 cut(s) | 101 |
| FriOI | GRGCYC | 1 cut(s) | 374 |
| Fsp4HI | GCNGC | 1 cut(s) | 31 |
| GluI | GCNGC | 1 cut(s) | 31 |
| HaeIII | GGCC | 1 cut(s) | 372 |
| HapII | CCGG | 1 cut(s) | 57 |
| Hin1II | CATG | 2 cut(s) | 103, 392 |
| HindIII | AAGCTT | 1 cut(s) | 352 |
| HinfI | GANTC | 3 cut(s) | 94, 295, 301 |
| HpaII | CCGG | 1 cut(s) | 57 |
| HphI | GGTGA | 3 cut(s) | 16, 338, 437 |
| Hpy166II | GTNNAC | 1 cut(s) | 329 |
| Hpy188I | TCNGA | 2 cut(s) | 181, 300 |
| Hpy188III | TCNNGA | 1 cut(s) | 210 |
| Hpy8I | GTNNAC | 1 cut(s) | 329 |
| HpyCH4III | ACNGT | 1 cut(s) | 223 |
| HpyCH4V | TGCA | 2 cut(s) | 83, 206 |
| HpyF3I | CTNAG | 2 cut(s) | 48, 291 |
| Hsp92II | CATG | 2 cut(s) | 103, 392 |
| Kzo9I | GATC | 1 cut(s) | 229 |
| LpnPI | CCDG | 7 cut(s) | 9, 70, 90, 195, 303, 408, 446 |
| Lsp1109I | GCAGC | 1 cut(s) | 42 |
| LweI | GCATC | 3 cut(s) | 70, 178, 215 |
| MaeIII | GTNAC | 1 cut(s) | 397 |
| MalI | GATC | 1 cut(s) | 231 |
| MboI | GATC | 1 cut(s) | 229 |
| MboII | GAAGA | 3 cut(s) | 239, 283, 464 |
| MflI | RGATCY | 1 cut(s) | 229 |
| MhlI | GDGCHC | 1 cut(s) | 374 |
| MluCI | AATT | 2 cut(s) | 159, 311 |
| MlyI | GAGTC | 1 cut(s) | 304 |
| MmeI | TCCRAC | 2 cut(s) | 278, 284 |
| MnlI | CCTC | 6 cut(s) | 30, 230, 248, 334, 384, 408 |
| Mph1103I | ATGCAT | 1 cut(s) | 208 |
| MroXI | GAANNNNTTC | 1 cut(s) | 456 |
| MseI | TTAA | 2 cut(s) | 315, 435 |
| MspI | CCGG | 1 cut(s) | 57 |
| NdeI | CATATG | 1 cut(s) | 334 |
| NdeII | GATC | 1 cut(s) | 229 |
| NlaIII | CATG | 2 cut(s) | 103, 392 |
| NlaIV | GGNNCC | 3 cut(s) | 288, 372, 419 |
| NsiI | ATGCAT | 1 cut(s) | 208 |
| NspI | RCATGY | 1 cut(s) | 392 |
| PdmI | GAANNNNTTC | 1 cut(s) | 456 |
| PfeI | GAWTC | 2 cut(s) | 94, 301 |
| PinAI | ACCGGT | 1 cut(s) | 56 |
| PkrI | GCNGC | 1 cut(s) | 32 |
| PleI | GAGTC | 1 cut(s) | 303 |
| PpsI | GAGTC | 1 cut(s) | 303 |
| PspN4I | GGNNCC | 3 cut(s) | 288, 372, 419 |
| PspOMI | GGGCCC | 1 cut(s) | 370 |
| PspPI | GGNCC | 6 cut(s) | 155, 193, 257, 286, 370, 371 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 160, 192 |
| PsuI | RGATCY | 1 cut(s) | 229 |
| RsaI | GTAC | 4 cut(s) | 120, 381, 393, 441 |
| RsaNI | GTAC | 4 cut(s) | 119, 380, 392, 440 |
| SaqAI | TTAA | 2 cut(s) | 315, 435 |
| SatI | GCNGC | 1 cut(s) | 31 |
| Sau3AI | GATC | 1 cut(s) | 229 |
| Sau96I | GGNCC | 6 cut(s) | 155, 193, 257, 286, 370, 371 |
| SchI | GAGTC | 1 cut(s) | 304 |
| SduI | GDGCHC | 1 cut(s) | 374 |
| SfaNI | GCATC | 3 cut(s) | 70, 178, 215 |
| SinI | GGWCC | 4 cut(s) | 155, 193, 257, 286 |
| Sse9I | AATT | 2 cut(s) | 159, 311 |
| SsiI | CCGC | 1 cut(s) | 191 |
| StyI | CCWWGG | 1 cut(s) | 421 |
| TaaI | ACNGT | 1 cut(s) | 223 |
| TasI | AATT | 2 cut(s) | 159, 311 |
| TatI | WGTACW | 1 cut(s) | 118 |
| TfiI | GAWTC | 2 cut(s) | 94, 301 |
| Tru1I | TTAA | 2 cut(s) | 315, 435 |
| Tru9I | TTAA | 2 cut(s) | 315, 435 |
| TseI | GCWGC | 1 cut(s) | 30 |
| TspDTI | ATGAA | 1 cut(s) | 284 |
| VpaK11BI | GGWCC | 4 cut(s) | 155, 193, 257, 286 |
| XceI | RCATGY | 1 cut(s) | 392 |
| XmnI | GAANNNNTTC | 1 cut(s) | 456 |
| Zsp2I | ATGCAT | 1 cut(s) | 208 |