Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000089

Physical Location & Seq

Genomic Coordinates Reverse (-)

22362957 .. 22363599

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29221.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAGTTACAATAGATTACAAGCAGAGACCATTGAAGTTTATACTGAATGGCTAAACAACCTTGGTAAAAAGCAAAGACCATTGGGTCCTAATGTTGTGAGAGTTTGGGTAGATGCACGAAAAGTCCCATCTGCATCCCTTTGGAGACCAGCATCTGAGTTGCAAATCATTGAAGATGCTCTTGTCTTCAAGTTAGTGGAGGTTCCAGAGAATAATGAAAAGAGCAGAGTAATGAGCCTGAAGGTGGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019438 GO:0019752 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

85

Amino Acids

9.67

Weight (kDa)

9.15

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42700
fragaria_vesca	FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica	MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis	pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis	RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata	RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora	Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii	Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa	Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha	Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana	Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	3 cut(s)	35, 173, 190
Alw26I	GTCTC	2 cut(s)	20, 139
AlwNI	CAGNNNCTG	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	178
BccI	CCATC	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	20, 139
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	87, 204
BmsI	GCATC	4 cut(s)	103, 143, 161, 166
BpiI	GAAGAC	1 cut(s)	178
BsaI	GGTCTC	2 cut(s)	20, 139
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	2 cut(s)	20, 139
BsmFI	GGGAC	1 cut(s)	110
Bso31I	GGTCTC	2 cut(s)	20, 139
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	87, 204
BspTNI	GGTCTC	2 cut(s)	20, 139
BssECI	CCNNGG	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	134
BstMAI	GTCTC	2 cut(s)	20, 139
BstV2I	GAAGAC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	134
CaiI	CAGNNNCTG	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	86
CviJI	RGCY	2 cut(s)	52, 237
CviKI_1	RGCY	2 cut(s)	52, 237
DdeI	CTNAG	1 cut(s)	156
DrdI	GACNNNNNNGTC	1 cut(s)	84
DseDI	GACNNNNNNGTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	61
Eco31I	GGTCTC	2 cut(s)	20, 139
Eco47I	GGWCC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaiI	YATR	1 cut(s)	42
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	110
FokI	GGATG	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	116, 134, 163
HpyF3I	CTNAG	1 cut(s)	156
LpnPI	CCDG	3 cut(s)	162, 219, 251
LweI	GCATC	4 cut(s)	103, 143, 161, 166
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	2 cut(s)	178, 185
MnlI	CCTC	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	87, 204
PpuMI	RGGWCCY	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	87, 204
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	155
Sau96I	GGNCC	1 cut(s)	86
SetI	ASST	3 cut(s)	63, 204, 246
SfaNI	GCATC	4 cut(s)	103, 143, 161, 166
SgeI	CNNG	8 cut(s)	32, 74, 129, 161, 194, 202, 218, 250
SinI	GGWCC	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.