DNA-directed 5'-3' RNA polymerase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_24 | PF03004 | 107 - 172 | 2.1e-06 | Plant transposase (Ptta/En/Spm family) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 404, 406 |
| AciI | CCGC | 2 cut(s) | 358, 406 |
| AclWI | GGATC | 2 cut(s) | 518, 531 |
| AcsI | RAATTY | 3 cut(s) | 211, 276, 344 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 287 |
| AgsI | TTSAA | 5 cut(s) | 99, 210, 216, 349, 413 |
| AjnI | CCWGG | 1 cut(s) | 164 |
| AluBI | AGCT | 3 cut(s) | 137, 149, 251 |
| AluI | AGCT | 3 cut(s) | 137, 149, 251 |
| Alw26I | GTCTC | 1 cut(s) | 86 |
| AlwI | GGATC | 2 cut(s) | 518, 531 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 152 |
| Ama87I | CYCGRG | 1 cut(s) | 285 |
| AoxI | GGCC | 1 cut(s) | 244 |
| ApeKI | GCWGC | 4 cut(s) | 137, 146, 149, 161 |
| ApoI | RAATTY | 3 cut(s) | 211, 276, 344 |
| AspLEI | GCGC | 1 cut(s) | 406 |
| AvaI | CYCGRG | 1 cut(s) | 285 |
| BamHI | GGATCC | 1 cut(s) | 523 |
| BbsI | GAAGAC | 1 cut(s) | 15 |
| BbvI | GCAGC | 4 cut(s) | 124, 136, 158, 173 |
| BccI | CCATC | 1 cut(s) | 77 |
| BciT130I | CCWGG | 1 cut(s) | 166 |
| BciVI | GTATCC | 1 cut(s) | 465 |
| BcoDI | GTCTC | 1 cut(s) | 86 |
| BfmI | CTRYAG | 1 cut(s) | 222 |
| BfuI | GTATCC | 1 cut(s) | 465 |
| BisI | GCNGC | 5 cut(s) | 138, 147, 150, 162, 407 |
| BlsI | GCNGC | 5 cut(s) | 139, 148, 151, 163, 408 |
| Bme1390I | CCNGG | 1 cut(s) | 166 |
| BmeT110I | CYCGRG | 1 cut(s) | 285 |
| BmiI | GGNNCC | 1 cut(s) | 525 |
| BmrFI | CCNGG | 1 cut(s) | 166 |
| BmsI | GCATC | 1 cut(s) | 436 |
| BpiI | GAAGAC | 1 cut(s) | 15 |
| BsaJI | CCNNGG | 2 cut(s) | 165, 284 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 287 |
| BseBI | CCWGG | 1 cut(s) | 166 |
| BseDI | CCNNGG | 2 cut(s) | 165, 284 |
| BseGI | GGATG | 1 cut(s) | 88 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 287 |
| BseRI | GAGGAG | 1 cut(s) | 102 |
| BseXI | GCAGC | 4 cut(s) | 124, 136, 158, 173 |
| Bsh1236I | CGCG | 2 cut(s) | 404, 406 |
| BshFI | GGCC | 1 cut(s) | 246 |
| BsiHKCI | CYCGRG | 1 cut(s) | 285 |
| BslFI | GGGAC | 1 cut(s) | 552 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 287 |
| BsmAI | GTCTC | 1 cut(s) | 86 |
| BsmFI | GGGAC | 1 cut(s) | 552 |
| BsmI | GAATGC | 1 cut(s) | 360 |
| BsnI | GGCC | 1 cut(s) | 246 |
| BsoBI | CYCGRG | 1 cut(s) | 285 |
| Bsp143I | GATC | 1 cut(s) | 523 |
| BspACI | CCGC | 2 cut(s) | 358, 406 |
| BspANI | GGCC | 1 cut(s) | 246 |
| BspFNI | CGCG | 2 cut(s) | 404, 406 |
| BspLI | GGNNCC | 1 cut(s) | 525 |
| BspMAI | CTGCAG | 1 cut(s) | 226 |
| BspPI | GGATC | 2 cut(s) | 518, 531 |
| BssECI | CCNNGG | 2 cut(s) | 165, 284 |
| BssMI | GATC | 1 cut(s) | 523 |
| Bst2UI | CCWGG | 1 cut(s) | 166 |
| BstC8I | GCNNGC | 1 cut(s) | 360 |
| BstDEI | CTNAG | 1 cut(s) | 56 |
| BstF5I | GGATG | 1 cut(s) | 88 |
| BstFNI | CGCG | 2 cut(s) | 404, 406 |
| BstHHI | GCGC | 1 cut(s) | 406 |
| BstKTI | GATC | 1 cut(s) | 526 |
| BstMAI | GTCTC | 1 cut(s) | 86 |
| BstMBI | GATC | 1 cut(s) | 523 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 143, 146, 158, 485 |
| BstNI | CCWGG | 1 cut(s) | 166 |
| BstNSI | RCATGY | 2 cut(s) | 479, 545 |
| BstSCI | CCNGG | 1 cut(s) | 164 |
| BstSFI | CTRYAG | 1 cut(s) | 222 |
| BstUI | CGCG | 2 cut(s) | 404, 406 |
| BstV1I | GCAGC | 4 cut(s) | 124, 136, 158, 173 |
| BstV2I | GAAGAC | 1 cut(s) | 15 |
| BstX2I | RGATCY | 1 cut(s) | 523 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 304 |
| BstYI | RGATCY | 1 cut(s) | 523 |
| BsuI | GTATCC | 1 cut(s) | 465 |
| BsuRI | GGCC | 1 cut(s) | 246 |
| BtsCI | GGATG | 1 cut(s) | 88 |
| Cac8I | GCNNGC | 1 cut(s) | 360 |
| CaiI | CAGNNNCTG | 1 cut(s) | 152 |
| CfoI | GCGC | 1 cut(s) | 406 |
| CviAII | CATG | 3 cut(s) | 70, 476, 542 |
| CviJI | RGCY | 8 cut(s) | 119, 137, 149, 164, 246, 251, 296, 409 |
| CviKI_1 | RGCY | 8 cut(s) | 119, 137, 149, 164, 246, 251, 296, 409 |
| DdeI | CTNAG | 1 cut(s) | 56 |
| DpnI | GATC | 1 cut(s) | 525 |
| DpnII | GATC | 1 cut(s) | 523 |
| Eco32I | GATATC | 1 cut(s) | 453 |
| Eco88I | CYCGRG | 1 cut(s) | 285 |
| EcoRII | CCWGG | 1 cut(s) | 164 |
| EcoRV | GATATC | 1 cut(s) | 453 |
| FaeI | CATG | 3 cut(s) | 73, 479, 545 |
| FaiI | YATR | 7 cut(s) | 71, 80, 467, 469, 477, 483, 543 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 355, 387 |
| FaqI | GGGAC | 1 cut(s) | 552 |
| FatI | CATG | 3 cut(s) | 69, 475, 541 |
| FauI | CCCGC | 1 cut(s) | 351 |
| Fnu4HI | GCNGC | 5 cut(s) | 138, 147, 150, 162, 407 |
| FokI | GGATG | 1 cut(s) | 95 |
| Fsp4HI | GCNGC | 5 cut(s) | 138, 147, 150, 162, 407 |
| GlaI | GCGC | 1 cut(s) | 405 |
| GluI | GCNGC | 5 cut(s) | 138, 147, 150, 162, 407 |
| HaeIII | GGCC | 1 cut(s) | 246 |
| HhaI | GCGC | 1 cut(s) | 406 |
| Hin1II | CATG | 3 cut(s) | 73, 479, 545 |
| Hin6I | GCGC | 1 cut(s) | 404 |
| HinP1I | GCGC | 1 cut(s) | 404 |
| HinfI | GANTC | 2 cut(s) | 182, 192 |
| Hpy188I | TCNGA | 2 cut(s) | 463, 508 |
| Hpy188III | TCNNGA | 4 cut(s) | 239, 349, 443, 527 |
| HpyAV | CCTTC | 2 cut(s) | 236, 493 |
| HpyCH4V | TGCA | 5 cut(s) | 140, 161, 224, 545, 551 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 143, 146, 158, 485 |
| HpyF3I | CTNAG | 1 cut(s) | 56 |
| Hsp92II | CATG | 3 cut(s) | 73, 479, 545 |
| HspAI | GCGC | 1 cut(s) | 404 |
| Kzo9I | GATC | 1 cut(s) | 523 |
| LpnPI | CCDG | 7 cut(s) | 113, 151, 178, 234, 252, 276, 540 |
| Lsp1109I | GCAGC | 4 cut(s) | 124, 136, 158, 173 |
| LweI | GCATC | 1 cut(s) | 436 |
| MalI | GATC | 1 cut(s) | 525 |
| MboI | GATC | 1 cut(s) | 523 |
| MboII | GAAGA | 8 cut(s) | 20, 182, 239, 378, 425, 428, 505, 508 |
| MfeI | CAATTG | 1 cut(s) | 552 |
| MflI | RGATCY | 1 cut(s) | 523 |
| MluCI | AATT | 6 cut(s) | 211, 276, 299, 344, 419, 552 |
| MnlI | CCTC | 5 cut(s) | 80, 294, 417, 502, 514 |
| MslI | CAYNNNNRTG | 2 cut(s) | 480, 546 |
| MspA1I | CMGCKG | 1 cut(s) | 149 |
| MspR9I | CCNGG | 1 cut(s) | 166 |
| MunI | CAATTG | 1 cut(s) | 552 |
| Mva1269I | GAATGC | 1 cut(s) | 360 |
| MvaI | CCWGG | 1 cut(s) | 166 |
| MvnI | CGCG | 2 cut(s) | 404, 406 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 143, 146, 158, 485 |
| NdeII | GATC | 1 cut(s) | 523 |
| NlaIII | CATG | 3 cut(s) | 73, 479, 545 |
| NlaIV | GGNNCC | 1 cut(s) | 525 |
| NspI | RCATGY | 2 cut(s) | 479, 545 |
| PctI | GAATGC | 1 cut(s) | 360 |
| PfeI | GAWTC | 2 cut(s) | 182, 192 |
| PkrI | GCNGC | 5 cut(s) | 139, 148, 151, 163, 408 |
| Psp6I | CCWGG | 1 cut(s) | 164 |
| PspGI | CCWGG | 1 cut(s) | 164 |
| PspN4I | GGNNCC | 1 cut(s) | 525 |
| PstI | CTGCAG | 1 cut(s) | 226 |
| PstNI | CAGNNNCTG | 1 cut(s) | 152 |
| PsuI | RGATCY | 1 cut(s) | 523 |
| PvuII | CAGCTG | 1 cut(s) | 149 |
| RseI | CAYNNNNRTG | 2 cut(s) | 480, 546 |
| SatI | GCNGC | 5 cut(s) | 138, 147, 150, 162, 407 |
| Sau3AI | GATC | 1 cut(s) | 523 |
| ScrFI | CCNGG | 1 cut(s) | 166 |
| SetI | ASST | 6 cut(s) | 109, 139, 151, 253, 286, 461 |
| SfaNI | GCATC | 1 cut(s) | 436 |
| SfcI | CTRYAG | 1 cut(s) | 222 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 480, 546 |
| Sse9I | AATT | 6 cut(s) | 211, 276, 299, 344, 419, 552 |
| SsiI | CCGC | 2 cut(s) | 358, 406 |
| StyD4I | CCNGG | 1 cut(s) | 164 |
| TasI | AATT | 6 cut(s) | 211, 276, 299, 344, 419, 552 |
| TauI | GCSGC | 1 cut(s) | 409 |
| TfiI | GAWTC | 2 cut(s) | 182, 192 |
| TseI | GCWGC | 4 cut(s) | 137, 146, 149, 161 |
| TspDTI | ATGAA | 2 cut(s) | 195, 498 |
| XapI | RAATTY | 3 cut(s) | 211, 276, 344 |
| XceI | RCATGY | 2 cut(s) | 479, 545 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 76 |