DNA-directed 5'-3' RNA polymerase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF8039 | PF26133 | 206 - 275 | 1.6e-06 | Domain of unknown function (DUF8039) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 184 |
| AclWI | GGATC | 4 cut(s) | 114, 182, 195, 656 |
| AfaI | GTAC | 4 cut(s) | 355, 523, 574, 818 |
| AgsI | TTSAA | 5 cut(s) | 234, 365, 515, 588, 599 |
| AjnI | CCWGG | 1 cut(s) | 758 |
| AluBI | AGCT | 1 cut(s) | 743 |
| AluI | AGCT | 1 cut(s) | 743 |
| AlwI | GGATC | 4 cut(s) | 114, 182, 195, 656 |
| Aor13HI | TCCGGA | 1 cut(s) | 184 |
| AoxI | GGCC | 2 cut(s) | 564, 806 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 638, 670 |
| AseI | ATTAAT | 1 cut(s) | 605 |
| AspS9I | GGNCC | 2 cut(s) | 182, 564 |
| AvaII | GGWCC | 1 cut(s) | 182 |
| BaeGI | GKGCMC | 1 cut(s) | 690 |
| BamHI | GGATCC | 1 cut(s) | 187 |
| BanII | GRGCYC | 1 cut(s) | 89 |
| BciT130I | CCWGG | 1 cut(s) | 760 |
| BclI | TGATCA | 1 cut(s) | 526 |
| BfmI | CTRYAG | 2 cut(s) | 165, 786 |
| Bme1390I | CCNGG | 1 cut(s) | 760 |
| Bme18I | GGWCC | 1 cut(s) | 182 |
| BmgT120I | GGNCC | 2 cut(s) | 182, 564 |
| BmiI | GGNNCC | 1 cut(s) | 189 |
| BmrFI | CCNGG | 1 cut(s) | 760 |
| BmsI | GCATC | 2 cut(s) | 151, 525 |
| Bpu10I | CCTNAGC | 1 cut(s) | 88 |
| BpuEI | CTTGAG | 2 cut(s) | 282, 671 |
| BsaAI | YACGTR | 1 cut(s) | 509 |
| BsaJI | CCNNGG | 2 cut(s) | 691, 759 |
| BsaWI | WCCGGW | 1 cut(s) | 184 |
| Bse1I | ACTGG | 1 cut(s) | 357 |
| BseAI | TCCGGA | 1 cut(s) | 184 |
| BseBI | CCWGG | 1 cut(s) | 760 |
| BseDI | CCNNGG | 2 cut(s) | 691, 759 |
| BseGI | GGATG | 2 cut(s) | 540, 586 |
| BseMII | CTCAG | 1 cut(s) | 102 |
| BseNI | ACTGG | 1 cut(s) | 357 |
| BseSI | GKGCMC | 1 cut(s) | 690 |
| BshFI | GGCC | 2 cut(s) | 566, 808 |
| BsiSI | CCGG | 1 cut(s) | 185 |
| BsmI | GAATGC | 2 cut(s) | 289, 707 |
| BsnI | GGCC | 2 cut(s) | 566, 808 |
| Bsp1286I | GDGCHC | 2 cut(s) | 89, 690 |
| Bsp13I | TCCGGA | 1 cut(s) | 184 |
| Bsp143I | GATC | 4 cut(s) | 106, 187, 526, 661 |
| BspANI | GGCC | 2 cut(s) | 566, 808 |
| BspCNI | CTCAG | 1 cut(s) | 101 |
| BspEI | TCCGGA | 1 cut(s) | 184 |
| BspHI | TCATGA | 2 cut(s) | 109, 697 |
| BspLI | GGNNCC | 1 cut(s) | 189 |
| BspPI | GGATC | 4 cut(s) | 114, 182, 195, 656 |
| BsrI | ACTGG | 1 cut(s) | 357 |
| BssECI | CCNNGG | 2 cut(s) | 691, 759 |
| BssMI | GATC | 4 cut(s) | 106, 187, 526, 661 |
| BssT1I | CCWWGG | 1 cut(s) | 691 |
| Bst2UI | CCWGG | 1 cut(s) | 760 |
| Bst4CI | ACNGT | 1 cut(s) | 521 |
| BstBAI | YACGTR | 1 cut(s) | 509 |
| BstC8I | GCNNGC | 2 cut(s) | 428, 482 |
| BstDEI | CTNAG | 3 cut(s) | 88, 273, 776 |
| BstF5I | GGATG | 2 cut(s) | 540, 586 |
| BstKTI | GATC | 4 cut(s) | 109, 190, 529, 664 |
| BstMBI | GATC | 4 cut(s) | 106, 187, 526, 661 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 68, 490 |
| BstNI | CCWGG | 1 cut(s) | 760 |
| BstSCI | CCNGG | 1 cut(s) | 758 |
| BstSFI | CTRYAG | 2 cut(s) | 165, 786 |
| BstSLI | GKGCMC | 1 cut(s) | 690 |
| BstX2I | RGATCY | 2 cut(s) | 187, 661 |
| BstYI | RGATCY | 2 cut(s) | 187, 661 |
| BsuRI | GGCC | 2 cut(s) | 566, 808 |
| BtsCI | GGATG | 2 cut(s) | 540, 586 |
| BtsIMutI | CAGTG | 2 cut(s) | 364, 517 |
| Cac8I | GCNNGC | 2 cut(s) | 428, 482 |
| CciI | TCATGA | 2 cut(s) | 109, 697 |
| Cfr13I | GGNCC | 2 cut(s) | 182, 564 |
| Csp6I | GTAC | 4 cut(s) | 354, 522, 573, 817 |
| CviAII | CATG | 6 cut(s) | 110, 254, 530, 619, 683, 698 |
| CviJI | RGCY | 6 cut(s) | 87, 566, 743, 758, 785, 808 |
| CviKI_1 | RGCY | 6 cut(s) | 87, 566, 743, 758, 785, 808 |
| CviQI | GTAC | 4 cut(s) | 354, 522, 573, 817 |
| DdeI | CTNAG | 3 cut(s) | 88, 273, 776 |
| DpnI | GATC | 4 cut(s) | 108, 189, 528, 663 |
| DpnII | GATC | 4 cut(s) | 106, 187, 526, 661 |
| DraI | TTTAAA | 1 cut(s) | 342 |
| Eco130I | CCWWGG | 1 cut(s) | 691 |
| Eco24I | GRGCYC | 1 cut(s) | 89 |
| Eco47I | GGWCC | 1 cut(s) | 182 |
| EcoRII | CCWGG | 1 cut(s) | 758 |
| EcoT14I | CCWWGG | 1 cut(s) | 691 |
| EcoT38I | GRGCYC | 1 cut(s) | 89 |
| ErhI | CCWWGG | 1 cut(s) | 691 |
| FaeI | CATG | 6 cut(s) | 113, 257, 533, 622, 686, 701 |
| FatI | CATG | 6 cut(s) | 109, 253, 529, 618, 682, 697 |
| FbaI | TGATCA | 1 cut(s) | 526 |
| FokI | GGATG | 2 cut(s) | 547, 593 |
| FriOI | GRGCYC | 1 cut(s) | 89 |
| HaeIII | GGCC | 2 cut(s) | 566, 808 |
| HapII | CCGG | 1 cut(s) | 185 |
| Hin1II | CATG | 6 cut(s) | 113, 257, 533, 622, 686, 701 |
| HinfI | GANTC | 2 cut(s) | 584, 653 |
| HpaII | CCGG | 1 cut(s) | 185 |
| Hpy166II | GTNNAC | 1 cut(s) | 294 |
| Hpy188I | TCNGA | 4 cut(s) | 453, 460, 770, 824 |
| Hpy188III | TCNNGA | 4 cut(s) | 26, 110, 185, 698 |
| Hpy8I | GTNNAC | 1 cut(s) | 294 |
| HpyAV | CCTTC | 5 cut(s) | 76, 144, 192, 240, 548 |
| HpyCH4III | ACNGT | 1 cut(s) | 521 |
| HpyCH4IV | ACGT | 1 cut(s) | 508 |
| HpyCH4V | TGCA | 6 cut(s) | 317, 335, 386, 416, 538, 644 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 68, 490 |
| HpyF3I | CTNAG | 3 cut(s) | 88, 273, 776 |
| HpySE526I | ACGT | 1 cut(s) | 508 |
| Hsp92II | CATG | 6 cut(s) | 113, 257, 533, 622, 686, 701 |
| Kpn2I | TCCGGA | 1 cut(s) | 184 |
| Ksp22I | TGATCA | 1 cut(s) | 526 |
| Kzo9I | GATC | 4 cut(s) | 106, 187, 526, 661 |
| LmnI | GCTCC | 1 cut(s) | 221 |
| LweI | GCATC | 2 cut(s) | 151, 525 |
| MaeII | ACGT | 1 cut(s) | 508 |
| MalI | GATC | 4 cut(s) | 108, 189, 528, 663 |
| MboI | GATC | 4 cut(s) | 106, 187, 526, 661 |
| MboII | GAAGA | 3 cut(s) | 88, 91, 638 |
| MfeI | CAATTG | 1 cut(s) | 798 |
| MflI | RGATCY | 2 cut(s) | 187, 661 |
| MhlI | GDGCHC | 2 cut(s) | 89, 690 |
| MluCI | AATT | 3 cut(s) | 599, 606, 798 |
| MlyI | GAGTC | 1 cut(s) | 662 |
| MmeI | TCCRAC | 1 cut(s) | 238 |
| MnlI | CCTC | 3 cut(s) | 97, 118, 200 |
| MroI | TCCGGA | 1 cut(s) | 184 |
| MseI | TTAA | 3 cut(s) | 341, 605, 832 |
| MspI | CCGG | 1 cut(s) | 185 |
| MspR9I | CCNGG | 1 cut(s) | 760 |
| MunI | CAATTG | 1 cut(s) | 798 |
| Mva1269I | GAATGC | 2 cut(s) | 289, 707 |
| MvaI | CCWGG | 1 cut(s) | 760 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 68, 490 |
| NdeII | GATC | 4 cut(s) | 106, 187, 526, 661 |
| NlaIII | CATG | 6 cut(s) | 113, 257, 533, 622, 686, 701 |
| NlaIV | GGNNCC | 1 cut(s) | 189 |
| PagI | TCATGA | 2 cut(s) | 109, 697 |
| PctI | GAATGC | 2 cut(s) | 289, 707 |
| PfeI | GAWTC | 1 cut(s) | 584 |
| PleI | GAGTC | 1 cut(s) | 661 |
| PpsI | GAGTC | 1 cut(s) | 661 |
| Ppu21I | YACGTR | 1 cut(s) | 509 |
| PshBI | ATTAAT | 1 cut(s) | 605 |
| Psp6I | CCWGG | 1 cut(s) | 758 |
| PspGI | CCWGG | 1 cut(s) | 758 |
| PspN4I | GGNNCC | 1 cut(s) | 189 |
| PspPI | GGNCC | 2 cut(s) | 182, 564 |
| PsuI | RGATCY | 2 cut(s) | 187, 661 |
| RsaI | GTAC | 4 cut(s) | 355, 523, 574, 818 |
| RsaNI | GTAC | 4 cut(s) | 354, 522, 573, 817 |
| SaqAI | TTAA | 3 cut(s) | 341, 605, 832 |
| Sau3AI | GATC | 4 cut(s) | 106, 187, 526, 661 |
| Sau96I | GGNCC | 2 cut(s) | 182, 564 |
| SchI | GAGTC | 1 cut(s) | 662 |
| ScrFI | CCNGG | 1 cut(s) | 760 |
| SduI | GDGCHC | 2 cut(s) | 89, 690 |
| SetI | ASST | 9 cut(s) | 44, 94, 136, 145, 184, 240, 511, 574, 745 |
| SfaNI | GCATC | 2 cut(s) | 151, 525 |
| SfcI | CTRYAG | 2 cut(s) | 165, 786 |
| SinI | GGWCC | 1 cut(s) | 182 |
| SmlI | CTYRAG | 2 cut(s) | 297, 650 |
| SmoI | CTYRAG | 2 cut(s) | 297, 650 |
| Sse9I | AATT | 3 cut(s) | 599, 606, 798 |
| StyD4I | CCNGG | 1 cut(s) | 758 |
| StyI | CCWWGG | 1 cut(s) | 691 |
| TaaI | ACNGT | 1 cut(s) | 521 |
| TaiI | ACGT | 1 cut(s) | 511 |
| TaqI | TCGA | 3 cut(s) | 5, 409, 751 |
| TasI | AATT | 3 cut(s) | 599, 606, 798 |
| TatI | WGTACW | 2 cut(s) | 521, 816 |
| TfiI | GAWTC | 1 cut(s) | 584 |
| Tru1I | TTAA | 3 cut(s) | 341, 605, 832 |
| Tru9I | TTAA | 3 cut(s) | 341, 605, 832 |
| TscAI | CASTG | 2 cut(s) | 364, 524 |
| TspDTI | ATGAA | 4 cut(s) | 81, 417, 668, 714 |
| TspRI | CASTG | 2 cut(s) | 364, 524 |
| VpaK11BI | GGWCC | 1 cut(s) | 182 |
| VspI | ATTAAT | 1 cut(s) | 605 |