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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 404 |
| AclI | AACGTT | 1 cut(s) | 24 |
| AcoI | YGGCCR | 1 cut(s) | 418 |
| AcsI | RAATTY | 1 cut(s) | 497 |
| AcuI | CTGAAG | 2 cut(s) | 179, 185 |
| AfaI | GTAC | 3 cut(s) | 323, 355, 526 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 553 |
| AflIII | ACRYGT | 1 cut(s) | 110 |
| AgsI | TTSAA | 2 cut(s) | 437, 505 |
| AjnI | CCWGG | 1 cut(s) | 268 |
| AluBI | AGCT | 2 cut(s) | 163, 200 |
| AluI | AGCT | 2 cut(s) | 163, 200 |
| Alw26I | GTCTC | 2 cut(s) | 371, 386 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 332 |
| AoxI | GGCC | 1 cut(s) | 418 |
| ApeKI | GCWGC | 3 cut(s) | 222, 343, 346 |
| ApoI | RAATTY | 1 cut(s) | 497 |
| AspLEI | GCGC | 1 cut(s) | 465 |
| AspS9I | GGNCC | 2 cut(s) | 206, 263 |
| AsuHPI | GGTGA | 1 cut(s) | 270 |
| AvaII | GGWCC | 2 cut(s) | 206, 263 |
| BalI | TGGCCA | 1 cut(s) | 420 |
| BanI | GGYRCC | 1 cut(s) | 404 |
| BbvI | GCAGC | 3 cut(s) | 234, 330, 333 |
| BccI | CCATC | 3 cut(s) | 60, 404, 429 |
| BciT130I | CCWGG | 1 cut(s) | 270 |
| BcoDI | GTCTC | 2 cut(s) | 371, 386 |
| BglII | AGATCT | 1 cut(s) | 372 |
| BisI | GCNGC | 3 cut(s) | 223, 344, 347 |
| BlsI | GCNGC | 3 cut(s) | 224, 345, 348 |
| BmcAI | AGTACT | 1 cut(s) | 355 |
| Bme1390I | CCNGG | 1 cut(s) | 270 |
| Bme18I | GGWCC | 2 cut(s) | 206, 263 |
| BmgT120I | GGNCC | 2 cut(s) | 206, 263 |
| BmiI | GGNNCC | 3 cut(s) | 71, 208, 406 |
| BmrFI | CCNGG | 1 cut(s) | 270 |
| BmrI | ACTGGG | 1 cut(s) | 345 |
| BmsI | GCATC | 1 cut(s) | 66 |
| BmuI | ACTGGG | 1 cut(s) | 345 |
| BpmI | CTGGAG | 2 cut(s) | 291, 451 |
| BpuEI | CTTGAG | 1 cut(s) | 353 |
| BsaBI | GATNNNNATC | 1 cut(s) | 44 |
| BsaI | GGTCTC | 1 cut(s) | 386 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 553 |
| Bse1I | ACTGG | 2 cut(s) | 351, 468 |
| Bse3DI | GCAATG | 3 cut(s) | 152, 317, 447 |
| Bse8I | GATNNNNATC | 1 cut(s) | 44 |
| BseBI | CCWGG | 1 cut(s) | 270 |
| BseGI | GGATG | 3 cut(s) | 48, 147, 543 |
| BseJI | GATNNNNATC | 1 cut(s) | 44 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 553 |
| BseMI | GCAATG | 3 cut(s) | 152, 317, 447 |
| BseMII | CTCAG | 2 cut(s) | 299, 324 |
| BseNI | ACTGG | 2 cut(s) | 351, 468 |
| BseRI | GAGGAG | 1 cut(s) | 350 |
| BseXI | GCAGC | 3 cut(s) | 234, 330, 333 |
| BshFI | GGCC | 1 cut(s) | 420 |
| BshNI | GGYRCC | 1 cut(s) | 404 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 553 |
| BsmAI | GTCTC | 2 cut(s) | 371, 386 |
| BsnI | GGCC | 1 cut(s) | 420 |
| Bso31I | GGTCTC | 1 cut(s) | 386 |
| Bsp1407I | TGTACA | 1 cut(s) | 524 |
| Bsp143I | GATC | 1 cut(s) | 372 |
| BspANI | GGCC | 1 cut(s) | 420 |
| BspCNI | CTCAG | 2 cut(s) | 298, 325 |
| BspLI | GGNNCC | 3 cut(s) | 71, 208, 406 |
| BspT107I | GGYRCC | 1 cut(s) | 404 |
| BspTNI | GGTCTC | 1 cut(s) | 386 |
| BsrDI | GCAATG | 3 cut(s) | 152, 317, 447 |
| BsrGI | TGTACA | 1 cut(s) | 524 |
| BsrI | ACTGG | 2 cut(s) | 351, 468 |
| BssMI | GATC | 1 cut(s) | 372 |
| Bst2UI | CCWGG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 2 cut(s) | 86, 404 |
| BstAUI | TGTACA | 1 cut(s) | 524 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 3 cut(s) | 65, 285, 333 |
| BstF5I | GGATG | 3 cut(s) | 48, 147, 543 |
| BstHHI | GCGC | 1 cut(s) | 465 |
| BstKTI | GATC | 1 cut(s) | 375 |
| BstMAI | GTCTC | 2 cut(s) | 371, 386 |
| BstMBI | GATC | 1 cut(s) | 372 |
| BstNI | CCWGG | 1 cut(s) | 270 |
| BstNSI | RCATGY | 3 cut(s) | 8, 114, 185 |
| BstSCI | CCNGG | 1 cut(s) | 268 |
| BstV1I | GCAGC | 3 cut(s) | 234, 330, 333 |
| BstX2I | RGATCY | 1 cut(s) | 372 |
| BstYI | RGATCY | 1 cut(s) | 372 |
| BsuRI | GGCC | 1 cut(s) | 420 |
| BtgZI | GCGATG | 1 cut(s) | 38 |
| BtsCI | GGATG | 3 cut(s) | 48, 147, 543 |
| BtsIMutI | CAGTG | 1 cut(s) | 475 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| CaiI | CAGNNNCTG | 1 cut(s) | 332 |
| CfoI | GCGC | 1 cut(s) | 465 |
| Cfr13I | GGNCC | 2 cut(s) | 206, 263 |
| Csp6I | GTAC | 3 cut(s) | 322, 354, 525 |
| CviAII | CATG | 4 cut(s) | 5, 111, 129, 182 |
| CviJI | RGCY | 7 cut(s) | 33, 163, 200, 250, 343, 420, 557 |
| CviKI_1 | RGCY | 7 cut(s) | 33, 163, 200, 250, 343, 420, 557 |
| CviQI | GTAC | 3 cut(s) | 322, 354, 525 |
| DdeI | CTNAG | 3 cut(s) | 65, 285, 333 |
| DpnI | GATC | 1 cut(s) | 374 |
| DpnII | GATC | 1 cut(s) | 372 |
| EaeI | YGGCCR | 1 cut(s) | 418 |
| Eco31I | GGTCTC | 1 cut(s) | 386 |
| Eco47I | GGWCC | 2 cut(s) | 206, 263 |
| Eco57I | CTGAAG | 2 cut(s) | 179, 185 |
| EcoRII | CCWGG | 1 cut(s) | 268 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 4 cut(s) | 8, 114, 132, 185 |
| FaiI | YATR | 7 cut(s) | 6, 91, 112, 130, 183, 188, 227 |
| FatI | CATG | 4 cut(s) | 4, 110, 128, 181 |
| Fnu4HI | GCNGC | 3 cut(s) | 223, 344, 347 |
| FokI | GGATG | 3 cut(s) | 35, 134, 530 |
| Fsp4HI | GCNGC | 3 cut(s) | 223, 344, 347 |
| GlaI | GCGC | 1 cut(s) | 464 |
| GluI | GCNGC | 3 cut(s) | 223, 344, 347 |
| GsuI | CTGGAG | 2 cut(s) | 291, 451 |
| HaeIII | GGCC | 1 cut(s) | 420 |
| HhaI | GCGC | 1 cut(s) | 465 |
| Hin1II | CATG | 4 cut(s) | 8, 114, 132, 185 |
| Hin6I | GCGC | 1 cut(s) | 463 |
| HinP1I | GCGC | 1 cut(s) | 463 |
| HincII | GTYRAC | 1 cut(s) | 22 |
| HindII | GTYRAC | 1 cut(s) | 22 |
| HinfI | GANTC | 3 cut(s) | 40, 275, 329 |
| HphI | GGTGA | 1 cut(s) | 270 |
| Hpy166II | GTNNAC | 1 cut(s) | 22 |
| Hpy188I | TCNGA | 3 cut(s) | 288, 334, 384 |
| Hpy188III | TCNNGA | 4 cut(s) | 370, 434, 478, 502 |
| Hpy8I | GTNNAC | 1 cut(s) | 22 |
| Hpy99I | CGWCG | 1 cut(s) | 404 |
| HpyAV | CCTTC | 2 cut(s) | 291, 389 |
| HpyCH4III | ACNGT | 2 cut(s) | 86, 404 |
| HpyCH4IV | ACGT | 1 cut(s) | 24 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 222, 310, 315, 452 |
| HpyF3I | CTNAG | 3 cut(s) | 65, 285, 333 |
| HpySE526I | ACGT | 1 cut(s) | 24 |
| Hsp92II | CATG | 4 cut(s) | 8, 114, 132, 185 |
| HspAI | GCGC | 1 cut(s) | 463 |
| Kzo9I | GATC | 1 cut(s) | 372 |
| LmnI | GCTCC | 2 cut(s) | 107, 470 |
| LpnPI | CCDG | 7 cut(s) | 91, 119, 255, 282, 364, 481, 491 |
| Lsp1109I | GCAGC | 3 cut(s) | 234, 330, 333 |
| LweI | GCATC | 1 cut(s) | 66 |
| MaeII | ACGT | 1 cut(s) | 24 |
| MaeIII | GTNAC | 1 cut(s) | 80 |
| MalI | GATC | 1 cut(s) | 374 |
| MboI | GATC | 1 cut(s) | 372 |
| MboII | GAAGA | 2 cut(s) | 117, 178 |
| MflI | RGATCY | 1 cut(s) | 372 |
| MlsI | TGGCCA | 1 cut(s) | 420 |
| MluCI | AATT | 5 cut(s) | 440, 487, 497, 507, 514 |
| MluNI | TGGCCA | 1 cut(s) | 420 |
| MmeI | TCCRAC | 1 cut(s) | 184 |
| MnlI | CCTC | 5 cut(s) | 225, 240, 276, 284, 328 |
| Mox20I | TGGCCA | 1 cut(s) | 420 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MscI | TGGCCA | 1 cut(s) | 420 |
| MseI | TTAA | 1 cut(s) | 495 |
| MslI | CAYNNNNRTG | 1 cut(s) | 127 |
| Msp20I | TGGCCA | 1 cut(s) | 420 |
| MspR9I | CCNGG | 1 cut(s) | 270 |
| MvaI | CCWGG | 1 cut(s) | 270 |
| NdeII | GATC | 1 cut(s) | 372 |
| NlaIII | CATG | 4 cut(s) | 8, 114, 132, 185 |
| NlaIV | GGNNCC | 3 cut(s) | 71, 208, 406 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 3 cut(s) | 8, 114, 185 |
| PaeI | GCATGC | 1 cut(s) | 8 |
| PciI | ACATGT | 1 cut(s) | 110 |
| PfeI | GAWTC | 3 cut(s) | 40, 275, 329 |
| PfoI | TCCNGGA | 1 cut(s) | 268 |
| PkrI | GCNGC | 3 cut(s) | 224, 345, 348 |
| PscI | ACATGT | 1 cut(s) | 110 |
| Psp1406I | AACGTT | 1 cut(s) | 24 |
| Psp6I | CCWGG | 1 cut(s) | 268 |
| PspGI | CCWGG | 1 cut(s) | 268 |
| PspN4I | GGNNCC | 3 cut(s) | 71, 208, 406 |
| PspPI | GGNCC | 2 cut(s) | 206, 263 |
| PstNI | CAGNNNCTG | 1 cut(s) | 332 |
| PsuI | RGATCY | 1 cut(s) | 372 |
| RsaI | GTAC | 3 cut(s) | 323, 355, 526 |
| RsaNI | GTAC | 3 cut(s) | 322, 354, 525 |
| RseI | CAYNNNNRTG | 1 cut(s) | 127 |
| SaqAI | TTAA | 1 cut(s) | 495 |
| SatI | GCNGC | 3 cut(s) | 223, 344, 347 |
| Sau3AI | GATC | 1 cut(s) | 372 |
| Sau96I | GGNCC | 2 cut(s) | 206, 263 |
| ScaI | AGTACT | 1 cut(s) | 355 |
| ScrFI | CCNGG | 1 cut(s) | 270 |
| SetI | ASST | 8 cut(s) | 27, 71, 165, 202, 217, 268, 283, 381 |
| SfaNI | GCATC | 1 cut(s) | 66 |
| SinI | GGWCC | 2 cut(s) | 206, 263 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 127 |
| SmlI | CTYRAG | 1 cut(s) | 368 |
| SmoI | CTYRAG | 1 cut(s) | 368 |
| SphI | GCATGC | 1 cut(s) | 8 |
| Sse9I | AATT | 5 cut(s) | 440, 487, 497, 507, 514 |
| SspI | AATATT | 1 cut(s) | 240 |
| StyD4I | CCNGG | 1 cut(s) | 268 |
| TaaI | ACNGT | 2 cut(s) | 86, 404 |
| TaiI | ACGT | 1 cut(s) | 27 |
| TaqI | TCGA | 1 cut(s) | 399 |
| TasI | AATT | 5 cut(s) | 440, 487, 497, 507, 514 |
| TatI | WGTACW | 2 cut(s) | 353, 524 |
| TfiI | GAWTC | 3 cut(s) | 40, 275, 329 |
| Tru1I | TTAA | 1 cut(s) | 495 |
| Tru9I | TTAA | 1 cut(s) | 495 |
| TscAI | CASTG | 1 cut(s) | 475 |
| TseI | GCWGC | 3 cut(s) | 222, 343, 346 |
| TspDTI | ATGAA | 1 cut(s) | 117 |
| TspRI | CASTG | 1 cut(s) | 475 |
| VpaK11BI | GGWCC | 2 cut(s) | 206, 263 |
| XapI | RAATTY | 1 cut(s) | 497 |
| XceI | RCATGY | 3 cut(s) | 8, 114, 185 |
| ZrmI | AGTACT | 1 cut(s) | 355 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |