RchiOBHm_Chr2g0133581

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000089
Physical Location & Seq
Reverse (-)
50438226 .. 50439436
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50473

Sequence Viewer

Length: 942 bp
ATGGGTGGAGAGACCTCAAAACAAGGTGGAAAGAAAGCCAAAAGGCAGGAAACAGCTGCACGAGCAGCTTTTGTGCTTGGGGAAAAAAGGAATGAATCCTTAAGAATATCTAATGGAAATTCAAATTCATCCCCTATAGAAGCTGATATTCCGGAATGTGAAGCTACAACAAACTCAGAAAAGAAAAAAATTCCACCTCGGGGTAAAGCCAAATTGTTGGATATTGCCAAAAAAAAAAAAAGGAAACTTCCTATTGTAGTTGAATTCAATGAAAGAGGCCAGCCCATTGGAGAAAATGCAGGTATATTCTCTTCTTTCATTGGAGCCTCAGCAAGAGAACTAATACCAATGACCGCTGGAACTTGGAAAAATCTATCTAATACTTTCAAAGATCAGATTTGGAAACACGTCACAACAAGTTTCATTGTTGATGAATTCTACAAGAAGCATATTTTTCAAAGGATGACGAAACTTTGGCAAGATAATAGATCTTTAGTGATGAAAGAAGCGGAAGAGCAAGCCAAAGTTGTTGATTTACAGCGTGCTGCTGCCCTTCTCAAGCCTAATAACATAGAATCCATGGATGAGTGGTTAGCTCTTATTAAACACAGAACTAGTGTGGGATTTAAGGAGAAGTGTCAAAAATTAAGAGAATGCGGGCAGGAAGAACTTTACTACATAGAACTAGTAGAAAAAGTTTTGCACGCCTTGAAGAAGAATTGGGAACAAAGTGAAAATCCAGATGCGATATCAAGGTTTGACATATGGATACATGCTTATGAAGCAAAGAAGAAGAAGAGTTCAGATGAAGTAGTTGAGGATCCGGAAATAGTGGTCTGCATACTCTTCTTTATGGCTCATCTTTTGGTATTTTTTTTTTCCCTAATCAGTTATGTATTTAGTTTGGATTTTGGTGAAGAGGTACCAGAAGGGGTAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_23 Transposase_24

Protein Analysis

313

Amino Acids

35.7

Weight (kDa)

8.66

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 290
Acc65I GGTACC 1 cut(s) 922
AccB1I GGYRCC 1 cut(s) 922
AccIII TCCGGA 2 cut(s) 151, 823
AciI CCGC 3 cut(s) 354, 509, 657
AclWI GGATC 2 cut(s) 815, 828
AcsI RAATTY 5 cut(s) 118, 124, 189, 263, 434
AfaI GTAC 1 cut(s) 924
AfiI CCNNNNNNNGG 1 cut(s) 200
AflII CTTAAG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 406
AgsI TTSAA 6 cut(s) 123, 263, 268, 388, 458, 712
AhlI ACTAGT 2 cut(s) 614, 685
AjiI CACGTC 1 cut(s) 409
AluBI AGCT 5 cut(s) 56, 68, 143, 164, 596
AluI AGCT 5 cut(s) 56, 68, 143, 164, 596
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 2 cut(s) 815, 828
Ama87I CYCGRG 1 cut(s) 198
Aor13HI TCCGGA 2 cut(s) 151, 823
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 4 cut(s) 56, 65, 545, 548
ApoI RAATTY 5 cut(s) 118, 124, 189, 263, 434
Asp718I GGTACC 1 cut(s) 922
AsuHPI GGTGA 1 cut(s) 926
AvaI CYCGRG 1 cut(s) 198
BamHI GGATCC 1 cut(s) 820
BanI GGYRCC 1 cut(s) 922
BarI GAAGNNNNNNTAC 2 cut(s) 295, 327
BauI CACGAG 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 328
BbvI GCAGC 4 cut(s) 43, 77, 532, 535
BciVI GTATCC 1 cut(s) 762
BcoDI GTCTC 1 cut(s) 5
BcuI ACTAGT 2 cut(s) 614, 685
BfaI CTAG 2 cut(s) 615, 686
BfmI CTRYAG 1 cut(s) 135
BfrI CTTAAG 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 290
BfuI GTATCC 1 cut(s) 762
BglII AGATCT 1 cut(s) 488
BisI GCNGC 4 cut(s) 57, 66, 546, 549
BlsI GCNGC 4 cut(s) 58, 67, 547, 550
BmeT110I CYCGRG 1 cut(s) 198
BmgBI CACGTC 1 cut(s) 409
BmiI GGNNCC 3 cut(s) 325, 822, 924
BmsI GCATC 1 cut(s) 733
Bpu10I CCTNAGC 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 542
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 197, 579
BsaWI WCCGGW 2 cut(s) 151, 823
Bsc4I CCNNNNNNNGG 1 cut(s) 200
BseAI TCCGGA 2 cut(s) 151, 823
BseDI CCNNGG 2 cut(s) 197, 579
BseGI GGATG 3 cut(s) 128, 468, 589
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 2 cut(s) 189, 342
BseXI GCAGC 4 cut(s) 43, 77, 532, 535
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 922
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 2 cut(s) 152, 824
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 5
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 198
Bsp13I TCCGGA 2 cut(s) 151, 823
Bsp143I GATC 3 cut(s) 391, 488, 820
Bsp19I CCATGG 1 cut(s) 579
BspACI CCGC 3 cut(s) 354, 509, 657
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 2 cut(s) 188, 341
BspEI TCCGGA 2 cut(s) 151, 823
BspLI GGNNCC 3 cut(s) 325, 822, 924
BspMI ACCTGC 1 cut(s) 290
BspPI GGATC 2 cut(s) 815, 828
BspQI GCTCTTC 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 922
BspTI CTTAAG 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 197, 579
BssMI GATC 3 cut(s) 391, 488, 820
BssSI CACGAG 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 579
Bst2BI CACGAG 1 cut(s) 60
Bst6I CTCTTC 5 cut(s) 316, 507, 791, 851, 912
BstAFI CTTAAG 1 cut(s) 100
BstC8I GCNNGC 5 cut(s) 281, 519, 543, 659, 705
BstDEI CTNAG 2 cut(s) 175, 328
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 3 cut(s) 128, 468, 589
BstKTI GATC 3 cut(s) 394, 491, 823
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 391, 488, 820
BstMWI GCNNNNNNNGC 3 cut(s) 62, 65, 782
BstNSI RCATGY 1 cut(s) 776
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 4 cut(s) 43, 77, 532, 535
BstX2I RGATCY 2 cut(s) 488, 820
BstXI CCANNNNNNTGG 2 cut(s) 217, 287
BstYI RGATCY 2 cut(s) 488, 820
BsuI GTATCC 1 cut(s) 762
BsuRI GGCC 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 579
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 3 cut(s) 128, 468, 589
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 5 cut(s) 281, 519, 543, 659, 705
Csp6I GTAC 1 cut(s) 923
CviAII CATG 2 cut(s) 580, 773
CviQI GTAC 1 cut(s) 923
DdeI CTNAG 2 cut(s) 175, 328
DpnI GATC 3 cut(s) 393, 490, 822
DpnII GATC 3 cut(s) 391, 488, 820
Eam1104I CTCTTC 5 cut(s) 316, 507, 791, 851, 912
EarI CTCTTC 5 cut(s) 316, 507, 791, 851, 912
Eco130I CCWWGG 1 cut(s) 579
Eco31I GGTCTC 1 cut(s) 5
Eco32I GATATC 1 cut(s) 750
Eco88I CYCGRG 1 cut(s) 198
EcoRI GAATTC 2 cut(s) 263, 434
EcoRV GATATC 1 cut(s) 750
EcoT14I CCWWGG 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 2 cut(s) 583, 776
FatI CATG 2 cut(s) 579, 772
FauI CCCGC 1 cut(s) 650
FauNDI CATATG 1 cut(s) 764
Fnu4HI GCNGC 4 cut(s) 57, 66, 546, 549
FokI GGATG 3 cut(s) 115, 475, 596
Fsp4HI GCNGC 4 cut(s) 57, 66, 546, 549
FspBI CTAG 2 cut(s) 615, 686
GluI GCNGC 4 cut(s) 57, 66, 546, 549
HaeIII GGCC 1 cut(s) 279
HapII CCGG 2 cut(s) 152, 824
Hin1II CATG 2 cut(s) 583, 776
HinfI GANTC 2 cut(s) 95, 575
HpaII CCGG 2 cut(s) 152, 824
HphI GGTGA 1 cut(s) 926
Hpy188I TCNGA 3 cut(s) 178, 396, 805
Hpy188III TCNNGA 3 cut(s) 152, 740, 824
HpyAV CCTTC 2 cut(s) 563, 923
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 4 cut(s) 59, 299, 703, 840
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 65, 782
HpyF3I CTNAG 2 cut(s) 175, 328
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 2 cut(s) 583, 776
Kpn2I TCCGGA 2 cut(s) 151, 823
KpnI GGTACC 1 cut(s) 926
Kzo9I GATC 3 cut(s) 391, 488, 820
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 8 cut(s) 32, 165, 285, 293, 342, 647, 753, 837
Lsp1109I GCAGC 4 cut(s) 43, 77, 532, 535
LweI GCATC 1 cut(s) 733
MaeI CTAG 2 cut(s) 615, 686
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 409
MalI GATC 3 cut(s) 393, 490, 822
MboI GATC 3 cut(s) 391, 488, 820
MflI RGATCY 2 cut(s) 488, 820
MluCI AATT 8 cut(s) 118, 124, 189, 212, 263, 434, 644, 718
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 6 cut(s) 25, 207, 269, 337, 811, 913
MroI TCCGGA 2 cut(s) 151, 823
MseI TTAA 4 cut(s) 101, 603, 627, 647
MslI CAYNNNNRTG 1 cut(s) 777
MspA1I CMGCKG 2 cut(s) 56, 356
MspCI CTTAAG 1 cut(s) 100
MspI CCGG 2 cut(s) 152, 824
Mva1269I GAATGC 1 cut(s) 659
MwoI GCNNNNNNNGC 3 cut(s) 62, 65, 782
NcoI CCATGG 1 cut(s) 579
NdeI CATATG 1 cut(s) 764
NdeII GATC 3 cut(s) 391, 488, 820
NlaIII CATG 2 cut(s) 583, 776
NlaIV GGNNCC 3 cut(s) 325, 822, 924
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 776
PciSI GCTCTTC 1 cut(s) 507
PctI GAATGC 1 cut(s) 659
PfeI GAWTC 2 cut(s) 95, 575
PkrI GCNGC 4 cut(s) 58, 67, 547, 550
PspN4I GGNNCC 3 cut(s) 325, 822, 924
PsuI RGATCY 2 cut(s) 488, 820
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 924
RsaNI GTAC 1 cut(s) 923
RseI CAYNNNNRTG 1 cut(s) 777
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 4 cut(s) 101, 603, 627, 647
SatI GCNGC 4 cut(s) 57, 66, 546, 549
Sau3AI GATC 3 cut(s) 391, 488, 820
SfaNI GCATC 1 cut(s) 733
SfcI CTRYAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 2 cut(s) 100, 557
SmoI CTYRAG 2 cut(s) 100, 557
SpeI ACTAGT 2 cut(s) 614, 685
Sse9I AATT 8 cut(s) 118, 124, 189, 212, 263, 434, 644, 718
SsiI CCGC 3 cut(s) 354, 509, 657
SspMI CTAG 2 cut(s) 615, 686
StyI CCWWGG 1 cut(s) 579
TaiI ACGT 1 cut(s) 411
TasI AATT 8 cut(s) 118, 124, 189, 212, 263, 434, 644, 718
TfiI GAWTC 2 cut(s) 95, 575
Tru1I TTAA 4 cut(s) 101, 603, 627, 647
Tru9I TTAA 4 cut(s) 101, 603, 627, 647
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 4 cut(s) 56, 65, 545, 548
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 9 cut(s) 108, 117, 285, 307, 412, 447, 515, 795, 822
Vha464I CTTAAG 1 cut(s) 100
XapI RAATTY 5 cut(s) 118, 124, 189, 263, 434
XceI RCATGY 1 cut(s) 776
XspI CTAG 2 cut(s) 615, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.