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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 204 |
| AcsI | RAATTY | 2 cut(s) | 276, 287 |
| AfaI | GTAC | 3 cut(s) | 168, 357, 369 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 538 |
| AflII | CTTAAG | 1 cut(s) | 218 |
| AflIII | ACRYGT | 1 cut(s) | 364 |
| AgsI | TTSAA | 1 cut(s) | 287 |
| AjnI | CCWGG | 1 cut(s) | 4 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 117, 149 |
| AluBI | AGCT | 2 cut(s) | 200, 397 |
| AluI | AGCT | 2 cut(s) | 200, 397 |
| Ama87I | CYCGRG | 2 cut(s) | 48, 208 |
| AoxI | GGCC | 3 cut(s) | 346, 507, 543 |
| ApeKI | GCWGC | 1 cut(s) | 473 |
| ApoI | RAATTY | 2 cut(s) | 276, 287 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 564 |
| AspS9I | GGNCC | 3 cut(s) | 233, 347, 507 |
| AsuHPI | GGTGA | 5 cut(s) | 20, 138, 314, 326, 413 |
| AvaI | CYCGRG | 2 cut(s) | 48, 208 |
| AvaII | GGWCC | 1 cut(s) | 233 |
| BanII | GRGCYC | 1 cut(s) | 323 |
| BbsI | GAAGAC | 1 cut(s) | 327 |
| BbvI | GCAGC | 1 cut(s) | 460 |
| BccI | CCATC | 2 cut(s) | 193, 484 |
| BceAI | ACGGC | 1 cut(s) | 461 |
| BciT130I | CCWGG | 1 cut(s) | 6 |
| BfaI | CTAG | 1 cut(s) | 267 |
| BfmI | CTRYAG | 1 cut(s) | 201 |
| BfrI | CTTAAG | 1 cut(s) | 218 |
| BisI | GCNGC | 1 cut(s) | 474 |
| BlsI | GCNGC | 1 cut(s) | 475 |
| Bme1390I | CCNGG | 1 cut(s) | 6 |
| Bme18I | GGWCC | 1 cut(s) | 233 |
| BmeT110I | CYCGRG | 2 cut(s) | 48, 208 |
| BmgT120I | GGNCC | 3 cut(s) | 233, 347, 507 |
| BmiI | GGNNCC | 2 cut(s) | 234, 264 |
| BmrFI | CCNGG | 1 cut(s) | 6 |
| BmsI | GCATC | 1 cut(s) | 166 |
| BpiI | GAAGAC | 1 cut(s) | 327 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| Bsa29I | ATCGAT | 1 cut(s) | 488 |
| BsaAI | YACGTR | 1 cut(s) | 367 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 538 |
| BseBI | CCWGG | 1 cut(s) | 6 |
| BseCI | ATCGAT | 1 cut(s) | 488 |
| BseGI | GGATG | 2 cut(s) | 132, 500 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 538 |
| BseMII | CTCAG | 1 cut(s) | 336 |
| BseRI | GAGGAG | 1 cut(s) | 470 |
| BseXI | GCAGC | 1 cut(s) | 460 |
| BshFI | GGCC | 3 cut(s) | 348, 509, 545 |
| BshVI | ATCGAT | 1 cut(s) | 488 |
| BsiHKCI | CYCGRG | 2 cut(s) | 48, 208 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 538 |
| BsnI | GGCC | 3 cut(s) | 348, 509, 545 |
| BsoBI | CYCGRG | 2 cut(s) | 48, 208 |
| Bsp1286I | GDGCHC | 1 cut(s) | 323 |
| BspANI | GGCC | 3 cut(s) | 348, 509, 545 |
| BspCNI | CTCAG | 1 cut(s) | 335 |
| BspDI | ATCGAT | 1 cut(s) | 488 |
| BspLI | GGNNCC | 2 cut(s) | 234, 264 |
| BspTI | CTTAAG | 1 cut(s) | 218 |
| Bst2UI | CCWGG | 1 cut(s) | 6 |
| BstAFI | CTTAAG | 1 cut(s) | 218 |
| BstBAI | YACGTR | 1 cut(s) | 367 |
| BstDEI | CTNAG | 1 cut(s) | 322 |
| BstF5I | GGATG | 2 cut(s) | 132, 500 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 53 |
| BstNI | CCWGG | 1 cut(s) | 6 |
| BstNSI | RCATGY | 1 cut(s) | 47 |
| BstSCI | CCNGG | 1 cut(s) | 4 |
| BstSFI | CTRYAG | 1 cut(s) | 201 |
| BstV1I | GCAGC | 1 cut(s) | 460 |
| BstV2I | GAAGAC | 1 cut(s) | 327 |
| Bsu15I | ATCGAT | 1 cut(s) | 488 |
| BsuRI | GGCC | 3 cut(s) | 348, 509, 545 |
| BsuTUI | ATCGAT | 1 cut(s) | 488 |
| BtsCI | GGATG | 2 cut(s) | 132, 500 |
| Cfr13I | GGNCC | 3 cut(s) | 233, 347, 507 |
| ClaI | ATCGAT | 1 cut(s) | 488 |
| Csp6I | GTAC | 3 cut(s) | 167, 356, 368 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 144, 179 |
| CviAII | CATG | 4 cut(s) | 44, 108, 281, 309 |
| CviQI | GTAC | 3 cut(s) | 167, 356, 368 |
| DdeI | CTNAG | 1 cut(s) | 322 |
| DraI | TTTAAA | 1 cut(s) | 484 |
| Eco24I | GRGCYC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 1 cut(s) | 233 |
| Eco88I | CYCGRG | 2 cut(s) | 48, 208 |
| EcoO109I | RGGNCCY | 1 cut(s) | 507 |
| EcoRI | GAATTC | 1 cut(s) | 276 |
| EcoRII | CCWGG | 1 cut(s) | 4 |
| EcoT38I | GRGCYC | 1 cut(s) | 323 |
| FaeI | CATG | 4 cut(s) | 47, 111, 284, 312 |
| FaiI | YATR | 9 cut(s) | 45, 68, 88, 109, 282, 310, 410, 500, 502 |
| FatI | CATG | 4 cut(s) | 43, 107, 280, 308 |
| FblI | GTMKAC | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 1 cut(s) | 474 |
| FokI | GGATG | 2 cut(s) | 119, 507 |
| FriOI | GRGCYC | 1 cut(s) | 323 |
| Fsp4HI | GCNGC | 1 cut(s) | 474 |
| FspBI | CTAG | 1 cut(s) | 267 |
| GluI | GCNGC | 1 cut(s) | 474 |
| HaeIII | GGCC | 3 cut(s) | 348, 509, 545 |
| Hin1II | CATG | 4 cut(s) | 47, 111, 284, 312 |
| HindIII | AAGCTT | 1 cut(s) | 395 |
| HinfI | GANTC | 3 cut(s) | 118, 194, 570 |
| HphI | GGTGA | 5 cut(s) | 20, 138, 314, 326, 413 |
| Hpy166II | GTNNAC | 2 cut(s) | 205, 305 |
| Hpy188III | TCNNGA | 4 cut(s) | 50, 80, 92, 122 |
| Hpy8I | GTNNAC | 2 cut(s) | 205, 305 |
| HpyAV | CCTTC | 2 cut(s) | 159, 463 |
| HpyCH4IV | ACGT | 1 cut(s) | 366 |
| HpyCH4V | TGCA | 2 cut(s) | 14, 179 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 53 |
| HpyF3I | CTNAG | 1 cut(s) | 322 |
| HpySE526I | ACGT | 1 cut(s) | 366 |
| Hsp92II | CATG | 4 cut(s) | 47, 111, 284, 312 |
| LmnI | GCTCC | 1 cut(s) | 262 |
| LpnPI | CCDG | 6 cut(s) | 18, 93, 135, 384, 422, 524 |
| Lsp1109I | GCAGC | 1 cut(s) | 460 |
| LweI | GCATC | 1 cut(s) | 166 |
| MaeI | CTAG | 1 cut(s) | 267 |
| MaeII | ACGT | 1 cut(s) | 366 |
| MaeIII | GTNAC | 1 cut(s) | 373 |
| MboII | GAAGA | 2 cut(s) | 185, 327 |
| MhlI | GDGCHC | 1 cut(s) | 323 |
| MluCI | AATT | 3 cut(s) | 276, 287, 432 |
| MlyI | GAGTC | 2 cut(s) | 127, 564 |
| MmeI | TCCRAC | 2 cut(s) | 160, 260 |
| MnlI | CCTC | 9 cut(s) | 30, 206, 310, 384, 448, 451, 498, 520, 535 |
| MroXI | GAANNNNTTC | 1 cut(s) | 564 |
| MseI | TTAA | 3 cut(s) | 101, 219, 483 |
| MspA1I | CMGCKG | 1 cut(s) | 200 |
| MspCI | CTTAAG | 1 cut(s) | 218 |
| MspR9I | CCNGG | 1 cut(s) | 6 |
| MvaI | CCWGG | 1 cut(s) | 6 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 53 |
| NlaIII | CATG | 4 cut(s) | 47, 111, 284, 312 |
| NlaIV | GGNNCC | 2 cut(s) | 234, 264 |
| NspI | RCATGY | 1 cut(s) | 47 |
| PdmI | GAANNNNTTC | 1 cut(s) | 564 |
| PfeI | GAWTC | 1 cut(s) | 194 |
| PkrI | GCNGC | 1 cut(s) | 475 |
| PleI | GAGTC | 2 cut(s) | 126, 564 |
| PpsI | GAGTC | 2 cut(s) | 126, 564 |
| Ppu21I | YACGTR | 1 cut(s) | 367 |
| Psp6I | CCWGG | 1 cut(s) | 4 |
| PspGI | CCWGG | 1 cut(s) | 4 |
| PspN4I | GGNNCC | 2 cut(s) | 234, 264 |
| PspPI | GGNCC | 3 cut(s) | 233, 347, 507 |
| PvuII | CAGCTG | 1 cut(s) | 200 |
| RsaI | GTAC | 3 cut(s) | 168, 357, 369 |
| RsaNI | GTAC | 3 cut(s) | 167, 356, 368 |
| SaqAI | TTAA | 3 cut(s) | 101, 219, 483 |
| SatI | GCNGC | 1 cut(s) | 474 |
| Sau96I | GGNCC | 3 cut(s) | 233, 347, 507 |
| SchI | GAGTC | 2 cut(s) | 127, 564 |
| ScrFI | CCNGG | 1 cut(s) | 6 |
| SduI | GDGCHC | 1 cut(s) | 323 |
| SetI | ASST | 8 cut(s) | 130, 151, 202, 304, 369, 373, 399, 524 |
| SfaNI | GCATC | 1 cut(s) | 166 |
| SfcI | CTRYAG | 1 cut(s) | 201 |
| SinI | GGWCC | 1 cut(s) | 233 |
| SmiI | ATTTAAAT | 1 cut(s) | 484 |
| SmlI | CTYRAG | 1 cut(s) | 218 |
| SmoI | CTYRAG | 1 cut(s) | 218 |
| Sse9I | AATT | 3 cut(s) | 276, 287, 432 |
| SspMI | CTAG | 1 cut(s) | 267 |
| StyD4I | CCNGG | 1 cut(s) | 4 |
| SwaI | ATTTAAAT | 1 cut(s) | 484 |
| TaiI | ACGT | 1 cut(s) | 369 |
| TaqI | TCGA | 3 cut(s) | 274, 488, 568 |
| TasI | AATT | 3 cut(s) | 276, 287, 432 |
| TfiI | GAWTC | 1 cut(s) | 194 |
| Tru1I | TTAA | 3 cut(s) | 101, 219, 483 |
| Tru9I | TTAA | 3 cut(s) | 101, 219, 483 |
| TseI | GCWGC | 1 cut(s) | 473 |
| TspDTI | ATGAA | 2 cut(s) | 260, 269 |
| Vha464I | CTTAAG | 1 cut(s) | 218 |
| VpaK11BI | GGWCC | 1 cut(s) | 233 |
| XapI | RAATTY | 2 cut(s) | 276, 287 |
| XceI | RCATGY | 1 cut(s) | 47 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 160 |
| XmiI | GTMKAC | 1 cut(s) | 204 |
| XmnI | GAANNNNTTC | 1 cut(s) | 564 |
| XspI | CTAG | 1 cut(s) | 267 |