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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 140 |
| AciI | CCGC | 4 cut(s) | 24, 131, 358, 536 |
| AcuI | CTGAAG | 1 cut(s) | 564 |
| AfaI | GTAC | 1 cut(s) | 574 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 12, 70, 115 |
| AgsI | TTSAA | 5 cut(s) | 338, 367, 485, 508, 561 |
| AjiI | CACGTC | 1 cut(s) | 240 |
| AjnI | CCWGG | 1 cut(s) | 251 |
| AluBI | AGCT | 2 cut(s) | 113, 729 |
| AluI | AGCT | 2 cut(s) | 113, 729 |
| Alw21I | GWGCWC | 2 cut(s) | 115, 502 |
| Alw26I | GTCTC | 2 cut(s) | 89, 136 |
| Alw44I | GTGCAC | 1 cut(s) | 498 |
| Ama87I | CYCGRG | 1 cut(s) | 108 |
| AoxI | GGCC | 2 cut(s) | 359, 719 |
| ApaLI | GTGCAC | 1 cut(s) | 498 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 229, 261 |
| AspS9I | GGNCC | 3 cut(s) | 377, 455, 720 |
| AsuHPI | GGTGA | 3 cut(s) | 9, 130, 704 |
| AvaI | CYCGRG | 1 cut(s) | 108 |
| AvaII | GGWCC | 2 cut(s) | 377, 455 |
| BaeGI | GKGCMC | 1 cut(s) | 502 |
| BanII | GRGCYC | 1 cut(s) | 115 |
| Bbv12I | GWGCWC | 2 cut(s) | 115, 502 |
| BccI | CCATC | 2 cut(s) | 39, 230 |
| BciT130I | CCWGG | 1 cut(s) | 253 |
| BcoDI | GTCTC | 2 cut(s) | 89, 136 |
| BglII | AGATCT | 1 cut(s) | 552 |
| BisI | GCNGC | 1 cut(s) | 359 |
| BlsI | GCNGC | 1 cut(s) | 360 |
| Bme1390I | CCNGG | 1 cut(s) | 253 |
| Bme18I | GGWCC | 2 cut(s) | 377, 455 |
| BmeT110I | CYCGRG | 1 cut(s) | 108 |
| BmgBI | CACGTC | 1 cut(s) | 240 |
| BmgT120I | GGNCC | 3 cut(s) | 377, 455, 720 |
| BmiI | GGNNCC | 3 cut(s) | 159, 257, 378 |
| BmrFI | CCNGG | 1 cut(s) | 253 |
| BmsI | GCATC | 2 cut(s) | 176, 667 |
| BpmI | CTGGAG | 1 cut(s) | 160 |
| BsaBI | GATNNNNATC | 1 cut(s) | 642 |
| BsaI | GGTCTC | 1 cut(s) | 89 |
| BsaJI | CCNNGG | 2 cut(s) | 470, 672 |
| BsaWI | WCCGGW | 3 cut(s) | 5, 12, 160 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 12, 70, 115 |
| Bse1I | ACTGG | 2 cut(s) | 177, 259 |
| Bse3DI | GCAATG | 1 cut(s) | 126 |
| Bse8I | GATNNNNATC | 1 cut(s) | 642 |
| BseBI | CCWGG | 1 cut(s) | 253 |
| BseDI | CCNNGG | 2 cut(s) | 470, 672 |
| BseGI | GGATG | 1 cut(s) | 682 |
| BseJI | GATNNNNATC | 1 cut(s) | 642 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 12, 70, 115 |
| BseMI | GCAATG | 1 cut(s) | 126 |
| BseMII | CTCAG | 1 cut(s) | 449 |
| BseNI | ACTGG | 2 cut(s) | 177, 259 |
| BseRI | GAGGAG | 2 cut(s) | 264, 362 |
| BseSI | GKGCMC | 1 cut(s) | 502 |
| Bsh1236I | CGCG | 1 cut(s) | 140 |
| Bsh1285I | CGRYCG | 1 cut(s) | 24 |
| BshFI | GGCC | 2 cut(s) | 361, 721 |
| BsiEI | CGRYCG | 1 cut(s) | 24 |
| BsiHKAI | GWGCWC | 2 cut(s) | 115, 502 |
| BsiHKCI | CYCGRG | 1 cut(s) | 108 |
| BsiSI | CCGG | 4 cut(s) | 6, 13, 56, 161 |
| BslFI | GGGAC | 2 cut(s) | 47, 390 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 12, 70, 115 |
| BsmAI | GTCTC | 2 cut(s) | 89, 136 |
| BsmBI | CGTCTC | 1 cut(s) | 136 |
| BsmFI | GGGAC | 2 cut(s) | 47, 390 |
| BsnI | GGCC | 2 cut(s) | 361, 721 |
| Bso31I | GGTCTC | 1 cut(s) | 89 |
| BsoBI | CYCGRG | 1 cut(s) | 108 |
| Bsp1286I | GDGCHC | 2 cut(s) | 115, 502 |
| Bsp143I | GATC | 2 cut(s) | 478, 552 |
| Bsp19I | CCATGG | 1 cut(s) | 672 |
| Bsp68I | TCGCGA | 1 cut(s) | 140 |
| BspACI | CCGC | 4 cut(s) | 24, 131, 358, 536 |
| BspANI | GGCC | 2 cut(s) | 361, 721 |
| BspCNI | CTCAG | 1 cut(s) | 448 |
| BspFNI | CGCG | 1 cut(s) | 140 |
| BspLI | GGNNCC | 3 cut(s) | 159, 257, 378 |
| BspTNI | GGTCTC | 1 cut(s) | 89 |
| BsrDI | GCAATG | 1 cut(s) | 126 |
| BsrI | ACTGG | 2 cut(s) | 177, 259 |
| BssECI | CCNNGG | 2 cut(s) | 470, 672 |
| BssMI | GATC | 2 cut(s) | 478, 552 |
| BssT1I | CCWWGG | 2 cut(s) | 470, 672 |
| Bst2UI | CCWGG | 1 cut(s) | 253 |
| Bst6I | CTCTTC | 1 cut(s) | 562 |
| BstDEI | CTNAG | 4 cut(s) | 400, 435, 569, 747 |
| BstDSI | CCRYGG | 1 cut(s) | 672 |
| BstEII | GGTNACC | 1 cut(s) | 15 |
| BstF5I | GGATG | 1 cut(s) | 682 |
| BstFNI | CGCG | 1 cut(s) | 140 |
| BstKTI | GATC | 2 cut(s) | 481, 555 |
| BstMAI | GTCTC | 2 cut(s) | 89, 136 |
| BstMBI | GATC | 2 cut(s) | 478, 552 |
| BstMCI | CGRYCG | 1 cut(s) | 24 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 137 |
| BstNI | CCWGG | 1 cut(s) | 253 |
| BstNSI | RCATGY | 1 cut(s) | 425 |
| BstPI | GGTNACC | 1 cut(s) | 15 |
| BstSCI | CCNGG | 1 cut(s) | 251 |
| BstSLI | GKGCMC | 1 cut(s) | 502 |
| BstUI | CGCG | 1 cut(s) | 140 |
| BstX2I | RGATCY | 1 cut(s) | 552 |
| BstYI | RGATCY | 1 cut(s) | 552 |
| BsuRI | GGCC | 2 cut(s) | 361, 721 |
| BtgI | CCRYGG | 1 cut(s) | 672 |
| BtrI | CACGTC | 1 cut(s) | 240 |
| BtsCI | GGATG | 1 cut(s) | 682 |
| BtsIMutI | CAGTG | 1 cut(s) | 184 |
| BtuMI | TCGCGA | 1 cut(s) | 140 |
| Cfr13I | GGNCC | 3 cut(s) | 377, 455, 720 |
| CseI | GACGC | 1 cut(s) | 305 |
| Csp6I | GTAC | 1 cut(s) | 573 |
| CviAII | CATG | 4 cut(s) | 288, 422, 673, 717 |
| CviJI | RGCY | 7 cut(s) | 113, 173, 332, 361, 542, 721, 729 |
| CviKI_1 | RGCY | 7 cut(s) | 113, 173, 332, 361, 542, 721, 729 |
| CviQI | GTAC | 1 cut(s) | 573 |
| DdeI | CTNAG | 4 cut(s) | 400, 435, 569, 747 |
| DpnI | GATC | 2 cut(s) | 480, 554 |
| DpnII | GATC | 2 cut(s) | 478, 552 |
| Eam1104I | CTCTTC | 1 cut(s) | 562 |
| EarI | CTCTTC | 1 cut(s) | 562 |
| Ecl136II | GAGCTC | 1 cut(s) | 113 |
| Eco130I | CCWWGG | 2 cut(s) | 470, 672 |
| Eco24I | GRGCYC | 1 cut(s) | 115 |
| Eco31I | GGTCTC | 1 cut(s) | 89 |
| Eco47I | GGWCC | 2 cut(s) | 377, 455 |
| Eco53kI | GAGCTC | 1 cut(s) | 113 |
| Eco57I | CTGAAG | 1 cut(s) | 564 |
| Eco88I | CYCGRG | 1 cut(s) | 108 |
| Eco91I | GGTNACC | 1 cut(s) | 15 |
| EcoICRI | GAGCTC | 1 cut(s) | 113 |
| EcoO109I | RGGNCCY | 1 cut(s) | 377 |
| EcoO65I | GGTNACC | 1 cut(s) | 15 |
| EcoRII | CCWGG | 1 cut(s) | 251 |
| EcoT14I | CCWWGG | 2 cut(s) | 470, 672 |
| EcoT38I | GRGCYC | 1 cut(s) | 115 |
| ErhI | CCWWGG | 2 cut(s) | 470, 672 |
| Esp3I | CGTCTC | 1 cut(s) | 136 |
| FaeI | CATG | 4 cut(s) | 291, 425, 676, 720 |
| FaiI | YATR | 9 cut(s) | 89, 265, 289, 423, 522, 653, 663, 674, 718 |
| FaqI | GGGAC | 2 cut(s) | 47, 390 |
| FatI | CATG | 4 cut(s) | 287, 421, 672, 716 |
| FauI | CCCGC | 1 cut(s) | 124 |
| Fnu4HI | GCNGC | 1 cut(s) | 359 |
| FokI | GGATG | 1 cut(s) | 689 |
| FriOI | GRGCYC | 1 cut(s) | 115 |
| Fsp4HI | GCNGC | 1 cut(s) | 359 |
| GluI | GCNGC | 1 cut(s) | 359 |
| GsuI | CTGGAG | 1 cut(s) | 160 |
| HaeIII | GGCC | 2 cut(s) | 361, 721 |
| HapII | CCGG | 4 cut(s) | 6, 13, 56, 161 |
| HgaI | GACGC | 1 cut(s) | 305 |
| Hin1II | CATG | 4 cut(s) | 291, 425, 676, 720 |
| HincII | GTYRAC | 1 cut(s) | 316 |
| HindII | GTYRAC | 1 cut(s) | 316 |
| HinfI | GANTC | 4 cut(s) | 9, 123, 194, 323 |
| HpaI | GTTAAC | 1 cut(s) | 316 |
| HpaII | CCGG | 4 cut(s) | 6, 13, 56, 161 |
| HphI | GGTGA | 3 cut(s) | 9, 130, 704 |
| Hpy166II | GTNNAC | 3 cut(s) | 316, 455, 500 |
| Hpy188I | TCNGA | 5 cut(s) | 36, 45, 80, 234, 648 |
| Hpy188III | TCNNGA | 2 cut(s) | 139, 482 |
| Hpy8I | GTNNAC | 3 cut(s) | 316, 455, 500 |
| Hpy99I | CGWCG | 4 cut(s) | 214, 238, 241, 299 |
| HpyAV | CCTTC | 4 cut(s) | 367, 390, 539, 607 |
| HpyCH4IV | ACGT | 1 cut(s) | 239 |
| HpyCH4V | TGCA | 4 cut(s) | 419, 425, 500, 716 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 137 |
| HpyF3I | CTNAG | 4 cut(s) | 400, 435, 569, 747 |
| HpySE526I | ACGT | 1 cut(s) | 239 |
| Hsp92II | CATG | 4 cut(s) | 291, 425, 676, 720 |
| KspAI | GTTAAC | 1 cut(s) | 316 |
| Kzo9I | GATC | 2 cut(s) | 478, 552 |
| LmnI | GCTCC | 3 cut(s) | 472, 734, 747 |
| LweI | GCATC | 2 cut(s) | 176, 667 |
| MaeII | ACGT | 1 cut(s) | 239 |
| MaeIII | GTNAC | 2 cut(s) | 15, 438 |
| MalI | GATC | 2 cut(s) | 480, 554 |
| MboI | GATC | 2 cut(s) | 478, 552 |
| MboII | GAAGA | 5 cut(s) | 504, 536, 539, 549, 562 |
| MflI | RGATCY | 1 cut(s) | 552 |
| MhlI | GDGCHC | 2 cut(s) | 115, 502 |
| MluCI | AATT | 4 cut(s) | 164, 338, 508, 517 |
| MlyI | GAGTC | 2 cut(s) | 132, 332 |
| MmeI | TCCRAC | 1 cut(s) | 257 |
| MnlI | CCTC | 7 cut(s) | 61, 64, 74, 184, 285, 340, 603 |
| MseI | TTAA | 2 cut(s) | 315, 735 |
| MslI | CAYNNNNRTG | 1 cut(s) | 737 |
| MspI | CCGG | 4 cut(s) | 6, 13, 56, 161 |
| MspR9I | CCNGG | 1 cut(s) | 253 |
| MvaI | CCWGG | 1 cut(s) | 253 |
| MvnI | CGCG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 137 |
| NcoI | CCATGG | 1 cut(s) | 672 |
| NdeII | GATC | 2 cut(s) | 478, 552 |
| NlaIII | CATG | 4 cut(s) | 291, 425, 676, 720 |
| NlaIV | GGNNCC | 3 cut(s) | 159, 257, 378 |
| NmuCI | GTSAC | 2 cut(s) | 15, 438 |
| NruI | TCGCGA | 1 cut(s) | 140 |
| NspI | RCATGY | 1 cut(s) | 425 |
| PfeI | GAWTC | 2 cut(s) | 9, 194 |
| PkrI | GCNGC | 1 cut(s) | 360 |
| PleI | GAGTC | 2 cut(s) | 131, 331 |
| PpsI | GAGTC | 2 cut(s) | 131, 331 |
| PpuMI | RGGWCCY | 1 cut(s) | 377 |
| Psp124BI | GAGCTC | 1 cut(s) | 115 |
| Psp5II | RGGWCCY | 1 cut(s) | 377 |
| Psp6I | CCWGG | 1 cut(s) | 251 |
| PspEI | GGTNACC | 1 cut(s) | 15 |
| PspGI | CCWGG | 1 cut(s) | 251 |
| PspN4I | GGNNCC | 3 cut(s) | 159, 257, 378 |
| PspPI | GGNCC | 3 cut(s) | 377, 455, 720 |
| PspPPI | RGGWCCY | 1 cut(s) | 377 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 248, 280 |
| PsuI | RGATCY | 1 cut(s) | 552 |
| RruI | TCGCGA | 1 cut(s) | 140 |
| RsaI | GTAC | 1 cut(s) | 574 |
| RsaNI | GTAC | 1 cut(s) | 573 |
| RseI | CAYNNNNRTG | 1 cut(s) | 737 |
| SacI | GAGCTC | 1 cut(s) | 115 |
| SaqAI | TTAA | 2 cut(s) | 315, 735 |
| SatI | GCNGC | 1 cut(s) | 359 |
| Sau3AI | GATC | 2 cut(s) | 478, 552 |
| Sau96I | GGNCC | 3 cut(s) | 377, 455, 720 |
| SchI | GAGTC | 2 cut(s) | 132, 332 |
| ScrFI | CCNGG | 1 cut(s) | 253 |
| SduI | GDGCHC | 2 cut(s) | 115, 502 |
| SfaNI | GCATC | 2 cut(s) | 176, 667 |
| SinI | GGWCC | 2 cut(s) | 377, 455 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 737 |
| Sse9I | AATT | 4 cut(s) | 164, 338, 508, 517 |
| SsiI | CCGC | 4 cut(s) | 24, 131, 358, 536 |
| SstI | GAGCTC | 1 cut(s) | 115 |
| StyD4I | CCNGG | 1 cut(s) | 251 |
| StyI | CCWWGG | 2 cut(s) | 470, 672 |
| TaiI | ACGT | 1 cut(s) | 242 |
| TaqI | TCGA | 3 cut(s) | 209, 225, 294 |
| TasI | AATT | 4 cut(s) | 164, 338, 508, 517 |
| TatI | WGTACW | 1 cut(s) | 572 |
| TauI | GCSGC | 1 cut(s) | 361 |
| TfiI | GAWTC | 2 cut(s) | 9, 194 |
| Tru1I | TTAA | 2 cut(s) | 315, 735 |
| Tru9I | TTAA | 2 cut(s) | 315, 735 |
| TscAI | CASTG | 1 cut(s) | 184 |
| TseFI | GTSAC | 2 cut(s) | 15, 438 |
| Tsp45I | GTSAC | 2 cut(s) | 15, 438 |
| TspDTI | ATGAA | 3 cut(s) | 537, 546, 572 |
| TspRI | CASTG | 1 cut(s) | 184 |
| VneI | GTGCAC | 1 cut(s) | 498 |
| VpaK11BI | GGWCC | 2 cut(s) | 377, 455 |
| XceI | RCATGY | 1 cut(s) | 425 |