Rroxscaffold_5G00368170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000089
Physical Location & Seq
Forward (+)
49965510 .. 49969432
3923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368170.1

Sequence Viewer

Length: 774 bp
ATGTTTTCTTTCTGGGAAATAGTACGAAAGTACAAGGAAGAAGAAGAAGTAACACAACCATGTTCGATAAAAACTGATGCTGTTGCAAAGGCACTTGGTCCTGACCCGCGAGGACGAGTTAGAGGACTTGGGTTTGGTGCACTCCCTTCAAAAGTGGATGGTCAGACACACGTTGCTAATAAGGTCACTATGCTAGAGAACGCTTTTGCTGCTCAAACACAACAGGTGGACCGATTGATAGAGTCAGTGCAAGGTCTCGTTGCTCGGCTAGACAAAGGAGAGAATGTCAATGAAAACACAAGTGTGCAACATTCTGCTAATTGGATTGCACAGAGAAAACGAAAAGAGAATCTGAACTGTTCTAGTGATATAGCACAAAGCAAGCAGACAGATGCTAGTGTTATAAGTTCTAACAGGGAGAGGGGCAGTAGGGATCAAATGAAAGAAAATACCTACGGAAAGGAGCCACATTTGGGAAATGGTAGGCCAAAAAAGAGCCAAAAGACAAATGCAGCGGAAAAAGTGTTCTTGCTGAGTTGGTTTGCTAAAGAAGAAGAAGTCGTCGCTACTGGTGGCATTTTGTCAAAAGATCCAGAAGCTTTGGTGCATCATGTGCCTCTTGGCCATGATTGTTGGAAAATTTTAGTGCACGAAGTTTTTCATGATATAGCTTTGTATCGACCGACAAGTGAGTTCAATAAGCTTGATGCATCTACAGGAAGTGTAATCGCATGGCCTGTCAAATATATCAAGGTAAATTCGGCTGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

257

Amino Acids

28.59

Weight (kDa)

8.65

Isoelectric Point (pI)

25.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 183 - 252 2.4e-07 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 404
AccII CGCG 1 cut(s) 109
AciI CCGC 2 cut(s) 107, 515
AclWI GGATC 2 cut(s) 441, 584
AcoI YGGCCR 1 cut(s) 622
AcsI RAATTY 2 cut(s) 639, 757
AfaI GTAC 2 cut(s) 24, 32
AfiI CCNNNNNNNGG 1 cut(s) 473
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 2 cut(s) 150, 697
AleI CACNNNNGTG 1 cut(s) 302
AloI GAACNNNNNNTCC 2 cut(s) 509, 541
AluBI AGCT 3 cut(s) 599, 671, 703
AluI AGCT 3 cut(s) 599, 671, 703
Alw21I GWGCWC 2 cut(s) 142, 651
Alw26I GTCTC 1 cut(s) 260
Alw44I GTGCAC 2 cut(s) 138, 647
AlwI GGATC 2 cut(s) 441, 584
AoxI GGCC 3 cut(s) 485, 622, 734
ApaLI GTGCAC 2 cut(s) 138, 647
ApeKI GCWGC 2 cut(s) 209, 512
ApoI RAATTY 2 cut(s) 639, 757
Asp700I GAANNNNTTC 1 cut(s) 657
AspS9I GGNCC 2 cut(s) 98, 229
AvaII GGWCC 2 cut(s) 98, 229
BaeGI GKGCMC 2 cut(s) 142, 651
BalI TGGCCA 1 cut(s) 624
Bbv12I GWGCWC 2 cut(s) 142, 651
BbvI GCAGC 2 cut(s) 196, 524
BccI CCATC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 4 cut(s) 194, 269, 363, 396
BfmI CTRYAG 1 cut(s) 714
BisI GCNGC 2 cut(s) 210, 513
BlsI GCNGC 2 cut(s) 211, 514
Bme18I GGWCC 2 cut(s) 98, 229
BmgT120I GGNCC 2 cut(s) 98, 229
BmiI GGNNCC 1 cut(s) 465
BmsI GCATC 5 cut(s) 67, 382, 616, 697, 719
BsaI GGTCTC 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 1 cut(s) 574
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 1 cut(s) 574
BseSI GKGCMC 2 cut(s) 142, 651
BseXI GCAGC 2 cut(s) 196, 524
Bsh1236I CGCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 683
BshFI GGCC 3 cut(s) 487, 624, 736
BsiEI CGRYCG 1 cut(s) 683
BsiHKAI GWGCWC 2 cut(s) 142, 651
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 3 cut(s) 487, 624, 736
Bso31I GGTCTC 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 142, 651
Bsp143I GATC 2 cut(s) 433, 589
BspACI CCGC 2 cut(s) 107, 515
BspANI GGCC 3 cut(s) 487, 624, 736
BspCNI CTCAG 1 cut(s) 525
BspFNI CGCG 1 cut(s) 109
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 2 cut(s) 441, 584
BspTNI GGTCTC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 574
BssMI GATC 2 cut(s) 433, 589
Bst4CI ACNGT 1 cut(s) 359
BstAPI GCANNNNNTGC 1 cut(s) 613
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 533
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 2 cut(s) 436, 592
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 433, 589
BstMCI CGRYCG 1 cut(s) 683
BstMWI GCNNNNNNNGC 2 cut(s) 209, 613
BstSFI CTRYAG 1 cut(s) 714
BstSLI GKGCMC 2 cut(s) 142, 651
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 196, 524
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
BsuRI GGCC 3 cut(s) 487, 624, 736
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 383
CciI TCATGA 1 cut(s) 661
Cfr13I GGNCC 2 cut(s) 98, 229
Csp6I GTAC 2 cut(s) 23, 31
CviAII CATG 5 cut(s) 60, 611, 626, 662, 732
CviQI GTAC 2 cut(s) 23, 31
DdeI CTNAG 1 cut(s) 533
DpnI GATC 2 cut(s) 435, 591
DpnII GATC 2 cut(s) 433, 589
EaeI YGGCCR 1 cut(s) 622
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 98, 229
EcoT22I ATGCAT 1 cut(s) 712
FaeI CATG 5 cut(s) 63, 614, 629, 665, 735
FatI CATG 5 cut(s) 59, 610, 625, 661, 731
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 210, 513
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 210, 513
FspBI CTAG 4 cut(s) 194, 269, 363, 396
GluI GCNGC 2 cut(s) 210, 513
HaeIII GGCC 3 cut(s) 487, 624, 736
Hin1II CATG 5 cut(s) 63, 614, 629, 665, 735
HindIII AAGCTT 2 cut(s) 597, 701
HinfI GANTC 2 cut(s) 242, 349
Hpy166II GTNNAC 3 cut(s) 140, 229, 649
Hpy188I TCNGA 2 cut(s) 165, 354
Hpy188III TCNNGA 3 cut(s) 101, 593, 662
Hpy8I GTNNAC 3 cut(s) 140, 229, 649
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 9 cut(s) 86, 140, 250, 307, 329, 512, 607, 649, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 613
HpyF3I CTNAG 1 cut(s) 533
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 5 cut(s) 63, 614, 629, 665, 735
Kzo9I GATC 2 cut(s) 433, 589
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 7 cut(s) 114, 209, 400, 555, 606, 702, 750
Lsp1109I GCAGC 2 cut(s) 196, 524
LweI GCATC 5 cut(s) 67, 382, 616, 697, 719
MaeI CTAG 4 cut(s) 194, 269, 363, 396
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 49, 184
MalI GATC 2 cut(s) 435, 591
MboI GATC 2 cut(s) 433, 589
MboII GAAGA 5 cut(s) 50, 53, 56, 563, 566
MfeI CAATTG 1 cut(s) 769
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 2 cut(s) 142, 651
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 4 cut(s) 319, 639, 757, 769
MluNI TGGCCA 1 cut(s) 624
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 614
MnlI CCTC 4 cut(s) 104, 116, 414, 627
Mox20I TGGCCA 1 cut(s) 624
Mph1103I ATGCAT 1 cut(s) 712
MroXI GAANNNNTTC 1 cut(s) 657
MscI TGGCCA 1 cut(s) 624
MslI CAYNNNNRTG 2 cut(s) 58, 302
Msp20I TGGCCA 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 515
MunI CAATTG 1 cut(s) 769
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 209, 613
NdeII GATC 2 cut(s) 433, 589
NlaIII CATG 5 cut(s) 63, 614, 629, 665, 735
NlaIV GGNNCC 1 cut(s) 465
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 712
OliI CACNNNNGTG 1 cut(s) 302
PagI TCATGA 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 2 cut(s) 211, 514
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PsiI TTATAA 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 2 cut(s) 98, 229
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 2 cut(s) 24, 32
RsaNI GTAC 2 cut(s) 23, 31
RseI CAYNNNNRTG 2 cut(s) 58, 302
SatI GCNGC 2 cut(s) 210, 513
Sau3AI GATC 2 cut(s) 433, 589
Sau96I GGNCC 2 cut(s) 98, 229
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 2 cut(s) 142, 651
SetI ASST 9 cut(s) 174, 186, 228, 256, 455, 601, 673, 705, 756
SfaNI GCATC 5 cut(s) 67, 382, 616, 697, 719
SfcI CTRYAG 1 cut(s) 714
SinI GGWCC 2 cut(s) 98, 229
SmiMI CAYNNNNRTG 2 cut(s) 58, 302
Sse9I AATT 4 cut(s) 319, 639, 757, 769
SsiI CCGC 2 cut(s) 107, 515
SspMI CTAG 4 cut(s) 194, 269, 363, 396
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 65, 679
TaqII GACCGA 2 cut(s) 246, 697
TasI AATT 4 cut(s) 319, 639, 757, 769
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 1 cut(s) 349
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 209, 512
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 306, 455, 650
TspGWI ACGGA 1 cut(s) 471
TspRI CASTG 1 cut(s) 252
VneI GTGCAC 2 cut(s) 138, 647
VpaK11BI GGWCC 2 cut(s) 98, 229
XapI RAATTY 2 cut(s) 639, 757
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 4 cut(s) 194, 269, 363, 396
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.