Rmu_sc0005426.1_g000005

Fanconi-associated nuclease 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005426.1
Physical Location & Seq
Reverse (-)
8557 .. 11432
2876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005426.1_g000005.1.cds

Sequence Viewer

Length: 882 bp
atggctggtgatgcaaagatgagaagttctcacaagaggaaacatgctcaggaagccacacaagcatcaaaggtttctcatctaggggataagaatacacaagttagtccagaactatgtcaagatacattaaaaccatgtgatgagagtccagaacctaacatccaacaccactcaccttccacaaaagaagtggcacaagaagatgcaccaccgtcacaagattcagctgtagacccgagaggacttaagaaaactaggggtccaacgaaaatgaaagatattgctgtggagcctggaagtcgaattcatgttgaatttactgaaaaaggtgaaccatgtggtgagggctcaattcaacaaagtgaggaagaggagaaaacatctccaatgagcgtcaacaccaactcattgaataagtgcaagctactagattggagtggaacagaggacattgttgctgaagttcgttgggtttcaagtgatccagaagagtctgtcaatgaaattcccttgggacctaatgtaatgaaagtcttggttgatatctcaaataaaccagatgcttttctttggaggcctacatctaatatgttttgttttcaacatgcccaagagtgtcaactccaaatcaaagaaaaggtgcaagttgttggatttagtggatcggaacaaatagttgctgaaggacgttggtcctcaagtgatccggatcaggttgttcattttgttcccttggggcctaatgctatgatagtttgggtagatacaccgaaagtcccaactgcatccctttggaggccatcatctaagctggaaattattgaagatgctattggtactacaatagcatggccagcaaacaaagtggttttcttttag

Protein Analysis

293

Amino Acids

32.32

Weight (kDa)

5.19

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 709
AclWI GGATC 4 cut(s) 479, 673, 701, 720
AcoI YGGCCR 1 cut(s) 854
AcsI RAATTY 3 cut(s) 306, 317, 507
AcuI CTGAAG 2 cut(s) 483, 705
AfaI GTAC 1 cut(s) 841
AfiI CCNNNNNNNGG 1 cut(s) 798
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 6 cut(s) 317, 359, 415, 480, 605, 827
AjnI CCWGG 1 cut(s) 295
AjuI GAANNNNNNNTTGG 2 cut(s) 819, 851
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 230, 427, 814
AluI AGCT 3 cut(s) 230, 427, 814
AlwI GGATC 4 cut(s) 479, 673, 701, 720
Ama87I CYCGRG 1 cut(s) 238
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 4 cut(s) 578, 740, 800, 854
ApoI RAATTY 3 cut(s) 306, 317, 507
AspS9I GGNCC 4 cut(s) 263, 518, 696, 740
AsuHPI GGTGA 4 cut(s) 20, 168, 344, 356
AvaI CYCGRG 1 cut(s) 238
AvaII GGWCC 3 cut(s) 263, 518, 696
BalI TGGCCA 1 cut(s) 856
BanII GRGCYC 1 cut(s) 353
BccI CCATC 1 cut(s) 811
BciT130I CCWGG 1 cut(s) 297
BfaI CTAG 3 cut(s) 83, 258, 431
BfmI CTRYAG 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 3 cut(s) 263, 518, 696
BmeT110I CYCGRG 1 cut(s) 238
BmgT120I GGNCC 4 cut(s) 263, 518, 696, 740
BmiI GGNNCC 4 cut(s) 264, 294, 519, 741
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 5 cut(s) 74, 196, 553, 797, 820
BoxI GACNNNNGTC 1 cut(s) 694
BplI GAGNNNNNCTC 2 cut(s) 13, 45
Bpu10I CCTNAGC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 513, 735
BsaWI WCCGGW 1 cut(s) 709
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse8I GATNNNNATC 1 cut(s) 711
BseAI TCCGGA 1 cut(s) 709
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 513, 735
BseGI GGATG 2 cut(s) 162, 788
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 389
BshFI GGCC 4 cut(s) 580, 742, 802, 856
BsiHKCI CYCGRG 1 cut(s) 238
BsiSI CCGG 1 cut(s) 710
BslFI GGGAC 2 cut(s) 531, 764
BslI CCNNNNNNNGG 1 cut(s) 798
BsmFI GGGAC 2 cut(s) 531, 764
BsnI GGCC 4 cut(s) 580, 742, 802, 856
BsoBI CYCGRG 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 709
Bsp143I GATC 4 cut(s) 484, 665, 706, 712
BspANI GGCC 4 cut(s) 580, 742, 802, 856
BspCNI CTCAG 1 cut(s) 61
BspEI TCCGGA 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 264, 294, 519, 741
BspPI GGATC 4 cut(s) 479, 673, 701, 720
BspTI CTTAAG 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 513, 735
BssMI GATC 4 cut(s) 484, 665, 706, 712
BssT1I CCWWGG 2 cut(s) 513, 735
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 216
Bst6I CTCTTC 2 cut(s) 366, 486
BstAFI CTTAAG 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 425, 858
BstDEI CTNAG 2 cut(s) 48, 810
BstF5I GGATG 2 cut(s) 162, 788
BstKTI GATC 4 cut(s) 487, 668, 709, 715
BstMBI GATC 4 cut(s) 484, 665, 706, 712
BstMWI GCNNNNNNNGC 4 cut(s) 11, 53, 62, 857
BstNI CCWGG 1 cut(s) 297
BstNSI RCATGY 2 cut(s) 47, 611
BstPAI GACNNNNGTC 1 cut(s) 694
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 231
BsuRI GGCC 4 cut(s) 580, 742, 802, 856
BtsCI GGATG 2 cut(s) 162, 788
Cac8I GCNNGC 2 cut(s) 425, 858
Cfr13I GGNCC 4 cut(s) 263, 518, 696, 740
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 840
CspCI CAANNNNNGTGG 3 cut(s) 174, 209, 849
CviAII CATG 6 cut(s) 44, 138, 311, 339, 608, 852
CviQI GTAC 1 cut(s) 840
DdeI CTNAG 2 cut(s) 48, 810
DpnI GATC 4 cut(s) 486, 667, 708, 714
DpnII GATC 4 cut(s) 484, 665, 706, 712
EaeI YGGCCR 1 cut(s) 854
Eam1104I CTCTTC 2 cut(s) 366, 486
EarI CTCTTC 2 cut(s) 366, 486
Eco130I CCWWGG 2 cut(s) 513, 735
Eco147I AGGCCT 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 547
Eco47I GGWCC 3 cut(s) 263, 518, 696
Eco57I CTGAAG 2 cut(s) 483, 705
Eco88I CYCGRG 1 cut(s) 238
EcoO109I RGGNCCY 2 cut(s) 518, 740
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 295
EcoRV GATATC 1 cut(s) 547
EcoT14I CCWWGG 2 cut(s) 513, 735
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 2 cut(s) 513, 735
FaeI CATG 6 cut(s) 47, 141, 314, 342, 611, 855
FaiI YATR 9 cut(s) 45, 118, 139, 312, 340, 593, 609, 752, 853
FaqI GGGAC 2 cut(s) 531, 764
FatI CATG 6 cut(s) 43, 137, 310, 338, 607, 851
FblI GTMKAC 1 cut(s) 234
FokI GGATG 2 cut(s) 149, 775
FriOI GRGCYC 1 cut(s) 353
FspBI CTAG 3 cut(s) 83, 258, 431
HaeIII GGCC 4 cut(s) 580, 742, 802, 856
HapII CCGG 1 cut(s) 710
HgaI GACGC 1 cut(s) 385
Hin1II CATG 6 cut(s) 47, 141, 314, 342, 611, 855
HincII GTYRAC 2 cut(s) 400, 623
HindII GTYRAC 2 cut(s) 400, 623
HinfI GANTC 3 cut(s) 148, 224, 494
HpaII CCGG 1 cut(s) 710
HphI GGTGA 4 cut(s) 20, 168, 344, 356
Hpy166II GTNNAC 4 cut(s) 235, 335, 400, 623
Hpy188I TCNGA 1 cut(s) 670
Hpy188III TCNNGA 6 cut(s) 50, 110, 122, 152, 488, 710
Hpy8I GTNNAC 4 cut(s) 235, 335, 400, 623
HpyAV CCTTC 2 cut(s) 189, 680
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 5 cut(s) 14, 209, 423, 646, 788
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 53, 62, 857
HpyF3I CTNAG 2 cut(s) 48, 810
HpySE526I ACGT 1 cut(s) 691
Hsp92II CATG 6 cut(s) 47, 141, 314, 342, 611, 855
Kpn2I TCCGGA 1 cut(s) 709
Kzo9I GATC 4 cut(s) 484, 665, 706, 712
LmnI GCTCC 1 cut(s) 292
LweI GCATC 5 cut(s) 74, 196, 553, 797, 820
MaeI CTAG 3 cut(s) 83, 258, 431
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 1 cut(s) 216
MalI GATC 4 cut(s) 486, 667, 708, 714
MboI GATC 4 cut(s) 484, 665, 706, 712
MboII GAAGA 4 cut(s) 215, 383, 503, 839
MhlI GDGCHC 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 856
MluCI AATT 5 cut(s) 306, 317, 354, 507, 819
MluNI TGGCCA 1 cut(s) 856
MlyI GAGTC 2 cut(s) 157, 503
MmeI TCCRAC 3 cut(s) 190, 290, 634
MnlI CCTC 9 cut(s) 30, 236, 340, 361, 367, 442, 570, 709, 792
Mox20I TGGCCA 1 cut(s) 856
MroI TCCGGA 1 cut(s) 709
MscI TGGCCA 1 cut(s) 856
MseI TTAA 2 cut(s) 131, 249
Msp20I TGGCCA 1 cut(s) 856
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 710
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 4 cut(s) 11, 53, 62, 857
NdeII GATC 4 cut(s) 484, 665, 706, 712
NlaIII CATG 6 cut(s) 47, 141, 314, 342, 611, 855
NlaIV GGNNCC 4 cut(s) 264, 294, 519, 741
NmuCI GTSAC 1 cut(s) 216
NspI RCATGY 2 cut(s) 47, 611
PceI AGGCCT 1 cut(s) 580
PfeI GAWTC 1 cut(s) 224
PleI GAGTC 2 cut(s) 156, 502
PpsI GAGTC 2 cut(s) 156, 502
PpuMI RGGWCCY 1 cut(s) 518
PshAI GACNNNNGTC 1 cut(s) 694
Psp5II RGGWCCY 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 4 cut(s) 264, 294, 519, 741
PspPI GGNCC 4 cut(s) 263, 518, 696, 740
PspPPI RGGWCCY 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 841
RsaNI GTAC 1 cut(s) 840
SaqAI TTAA 2 cut(s) 131, 249
Sau3AI GATC 4 cut(s) 484, 665, 706, 712
Sau96I GGNCC 4 cut(s) 263, 518, 696, 740
SchI GAGTC 2 cut(s) 157, 503
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 5 cut(s) 74, 196, 553, 797, 820
SfcI CTRYAG 1 cut(s) 231
SinI GGWCC 3 cut(s) 263, 518, 696
SmlI CTYRAG 2 cut(s) 248, 700
SmoI CTYRAG 2 cut(s) 248, 700
Sse9I AATT 5 cut(s) 306, 317, 354, 507, 819
SseBI AGGCCT 1 cut(s) 580
SspMI CTAG 3 cut(s) 83, 258, 431
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 2 cut(s) 513, 735
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 1 cut(s) 694
TaqI TCGA 1 cut(s) 304
TasI AATT 5 cut(s) 306, 317, 354, 507, 819
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 131, 249
Tru9I TTAA 2 cut(s) 131, 249
TseFI GTSAC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 5 cut(s) 290, 299, 519, 545, 713
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 3 cut(s) 263, 518, 696
XapI RAATTY 3 cut(s) 306, 317, 507
XceI RCATGY 2 cut(s) 47, 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 3 cut(s) 83, 258, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.