Rh4BG196400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000089
Physical Location & Seq
Forward (+)
33860357 .. 33865830
5474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG196400.1

Sequence Viewer

Length: 1398 bp
ATGCTTCTCAATCATCCGAACGACCAATATCTCCAACTCTCTTTGGAATTTTCTTCGAGGAGATTAACCATGCTGGAGCTGGTGGGTTGTGGGCTGAGCTTGATATTCAAGGACAATAGGTTCGTGTGGCATAGCTGGTTTGAAATTGTTTTCTCAACACAAATAATTTTGCTTGCCTACAAATTACATGAATATATGATGCTGGATAAAGGTTGGGTGCGTCTTCACAGAGCTGCCCAATTTTTGGATCAAGACTACATCAAGCCTACTGAGTTTGTTAATGAAGATTGTGTTGAGCCCACTGAAGACATACATGATGATGATTTCATAGCAAAACTAGAAGATGCAGAAACTCCTTTGTACCCGAATTGTTCAAACTACAACAAGTTATCAGCCATTGTAGCTTTATATCGACTTAAAACTCAGAGTGGGTGGTCTGATAAGAGCAAGCAAGTCCTACACACATGTAGCAGAAAAGGAATGGCTCGATTGGCAGAAGATATGAAAAGGAATAGTGCTGACCCTTCTTCTGTCTCTAGAGTTAAAGTTTGGATCAGATCACGTACCAGAAAGGATGGTAAACCAGTAAACACTGAAGTTTATGAAACTATAGTAAGGGCATGCATTATAACTTGGTCAATAAAAAATAAGATTCAACAAAGTGAGGAAGAGGAGAAAACATCTCCAATGAGCGTCAACACCAACTCATTGAATAAGTGCAAGCTACTAGATTGGAGTGAAACAGAGGACATTGTTGCTGAAGAGTTATTTTTCAAATGGATTAGCAATTTGAGGAACAAAAGACAATTTATCTATGCCTTCGAGTTCGTACAGCAACTCAAGGAACAAGTGCAAATTATTGTTTGGACTGGAAAAGATGAAACAGTTGCAGAAGGACGTTGGCATTCAAGTGATCCAAAAGCGTTGGTAAATGGTATTCCTCTTGGACCTCGTGCCATGATAGTTTGGGTAGGTATTCCAAAGAATCATGAAGCATTTTTATGGAGGCCTACAACTGATATGACATGCATTGAAGATGCCGTGAATTCTGCTATAGCATGGCCTGCTAACAAAGTTGTTATGGAAAAGATATCAGAAAGTCAAGATGGTGAAAATGCATCCTCTCCTTCGAGTGTCAACTCCAAATCAAATAAAATGTGCAAGTTGTTGGATGTTAGTGGATCGGGACAAATAGTTGCTGAAGGGCGTTGGTCCTCAAGTGATCCAGATCAAGTTGTTCATTTTGTTCCCTTGGGGCCTAATGCGATGAGAGTTTGGATAGATACACCGAAAGTCCCAACTGCATCCCTTTGGAGGCCATCATCTGAGCTGGAAATTATTGAAGATGCTATTGGTACTACAGTAGCATGGCCAGCAGACAAAGTGGTTTTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_23 Transposase_24

Protein Analysis

465

Amino Acids

53.16

Weight (kDa)

5.73

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 149 - 226 1.8e-08 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 384 - 464 1.6e-07 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
AccB7I CCANNNNNTGG 1 cut(s) 244
AclWI GGATC 5 cut(s) 255, 560, 908, 1189, 1217
AcoI YGGCCR 1 cut(s) 1370
AcsI RAATTY 2 cut(s) 47, 1045
AcuI CTGAAG 4 cut(s) 324, 615, 780, 1221
AfaI GTAC 4 cut(s) 362, 565, 831, 1357
AfiI CCNNNNNNNGG 2 cut(s) 244, 1314
AflIII ACRYGT 1 cut(s) 464
AgsI TTSAA 9 cut(s) 109, 143, 375, 656, 712, 775, 909, 1034, 1343
AjuI GAANNNNNNNTTGG 2 cut(s) 1335, 1367
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 7 cut(s) 79, 99, 135, 233, 404, 724, 1330
AluI AGCT 7 cut(s) 79, 99, 135, 233, 404, 724, 1330
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 5 cut(s) 255, 560, 908, 1189, 1217
AoxI GGCC 5 cut(s) 1007, 1061, 1256, 1316, 1370
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 2 cut(s) 47, 1045
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspS9I GGNCC 3 cut(s) 947, 1212, 1256
AsuHPI GGTGA 1 cut(s) 1121
AvaII GGWCC 2 cut(s) 947, 1212
BaeI ACNNNNGTAYC 2 cut(s) 1347, 1380
BalI TGGCCA 1 cut(s) 1372
BanII GRGCYC 1 cut(s) 300
BauI CACGAG 1 cut(s) 951
BbsI GAAGAC 2 cut(s) 215, 312
BbvI GCAGC 1 cut(s) 220
BccI CCATC 3 cut(s) 569, 1100, 1327
BceAI ACGGC 1 cut(s) 1025
BcoDI GTCTC 1 cut(s) 538
BfaI CTAG 3 cut(s) 338, 537, 728
BfmI CTRYAG 3 cut(s) 609, 1053, 1359
BisI GCNGC 1 cut(s) 234
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 235
Bme18I GGWCC 2 cut(s) 947, 1212
BmgT120I GGNCC 3 cut(s) 947, 1212, 1256
BmiI GGNNCC 1 cut(s) 1257
BmsI GCATC 6 cut(s) 189, 334, 1027, 1127, 1313, 1336
BpiI GAAGAC 2 cut(s) 215, 312
BpmI CTGGAG 1 cut(s) 95
Bpu1102I GCTNAGC 1 cut(s) 95
BpuEI CTTGAG 2 cut(s) 824, 1201
BsaAI YACGTR 1 cut(s) 563
BsaBI GATNNNNATC 1 cut(s) 1227
BsaJI CCNNGG 1 cut(s) 1251
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 1314
Bse1I ACTGG 2 cut(s) 584, 874
Bse8I GATNNNNATC 1 cut(s) 1227
BseDI CCNNGG 1 cut(s) 1251
BseGI GGATG 5 cut(s) 13, 580, 1118, 1177, 1304
BseJI GATNNNNATC 1 cut(s) 1227
BseLI CCNNNNNNNGG 2 cut(s) 244, 1314
BseMII CTCAG 4 cut(s) 86, 261, 437, 1317
BseNI ACTGG 2 cut(s) 584, 874
BseRI GAGGAG 2 cut(s) 73, 686
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 5 cut(s) 1009, 1063, 1258, 1318, 1372
BslFI GGGAC 2 cut(s) 1200, 1280
BslI CCNNNNNNNGG 2 cut(s) 244, 1314
BsmAI GTCTC 1 cut(s) 538
BsmFI GGGAC 2 cut(s) 1200, 1280
BsmI GAATGC 1 cut(s) 904
BsnI GGCC 5 cut(s) 1009, 1063, 1258, 1318, 1372
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 7 cut(s) 247, 552, 557, 913, 1181, 1222, 1228
Bsp1720I GCTNAGC 1 cut(s) 95
BspANI GGCC 5 cut(s) 1009, 1063, 1258, 1318, 1372
BspCNI CTCAG 4 cut(s) 87, 262, 436, 1318
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 1 cut(s) 1257
BspPI GGATC 5 cut(s) 255, 560, 908, 1189, 1217
BsrI ACTGG 2 cut(s) 584, 874
BssECI CCNNGG 1 cut(s) 1251
BssMI GATC 7 cut(s) 247, 552, 557, 913, 1181, 1222, 1228
BssSI CACGAG 1 cut(s) 951
BssT1I CCWWGG 1 cut(s) 1251
Bst2BI CACGAG 1 cut(s) 951
Bst4CI ACNGT 2 cut(s) 886, 1363
Bst6I CTCTTC 2 cut(s) 663, 756
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 6 cut(s) 174, 449, 622, 722, 1065, 1374
BstDEI CTNAG 4 cut(s) 95, 270, 423, 1326
BstF5I GGATG 5 cut(s) 13, 580, 1118, 1177, 1304
BstKTI GATC 7 cut(s) 250, 555, 560, 916, 1184, 1225, 1231
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 7 cut(s) 247, 552, 557, 913, 1181, 1222, 1228
BstMWI GCNNNNNNNGC 4 cut(s) 401, 491, 1064, 1373
BstNSI RCATGY 3 cut(s) 468, 624, 1029
BstSFI CTRYAG 3 cut(s) 609, 1053, 1359
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 2 cut(s) 215, 312
BsuRI GGCC 5 cut(s) 1009, 1063, 1258, 1318, 1372
BtgZI GCGATG 1 cut(s) 1280
BtsCI GGATG 5 cut(s) 13, 580, 1118, 1177, 1304
BtsIMutI CAGTG 2 cut(s) 300, 591
Cac8I GCNNGC 6 cut(s) 174, 449, 622, 722, 1065, 1374
CciI TCATGA 1 cut(s) 988
Cfr13I GGNCC 3 cut(s) 947, 1212, 1256
CseI GACGC 2 cut(s) 209, 682
Csp6I GTAC 4 cut(s) 361, 564, 830, 1356
CviQI GTAC 4 cut(s) 361, 564, 830, 1356
DdeI CTNAG 4 cut(s) 95, 270, 423, 1326
DpnI GATC 7 cut(s) 249, 554, 559, 915, 1183, 1224, 1230
DpnII GATC 7 cut(s) 247, 552, 557, 913, 1181, 1222, 1228
EaeI YGGCCR 1 cut(s) 1370
Eam1104I CTCTTC 2 cut(s) 663, 756
EarI CTCTTC 2 cut(s) 663, 756
Eco130I CCWWGG 1 cut(s) 1251
Eco147I AGGCCT 1 cut(s) 1009
Eco24I GRGCYC 1 cut(s) 300
Eco32I GATATC 1 cut(s) 1092
Eco47I GGWCC 2 cut(s) 947, 1212
Eco57I CTGAAG 4 cut(s) 324, 615, 780, 1221
EcoO109I RGGNCCY 1 cut(s) 1256
EcoRI GAATTC 1 cut(s) 1045
EcoRV GATATC 1 cut(s) 1092
EcoT14I CCWWGG 1 cut(s) 1251
EcoT22I ATGCAT 3 cut(s) 626, 1031, 1120
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 1251
FaqI GGGAC 2 cut(s) 1200, 1280
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 4 cut(s) 587, 1105, 1184, 1291
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 3 cut(s) 338, 537, 728
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 5 cut(s) 1009, 1063, 1258, 1318, 1372
HgaI GACGC 2 cut(s) 209, 682
HincII GTYRAC 2 cut(s) 697, 1138
HindII GTYRAC 2 cut(s) 697, 1138
HinfI GANTC 2 cut(s) 652, 985
HphI GGTGA 1 cut(s) 1121
Hpy166II GTNNAC 4 cut(s) 581, 589, 697, 1138
Hpy188I TCNGA 6 cut(s) 18, 426, 439, 557, 1096, 1327
Hpy188III TCNNGA 6 cut(s) 251, 537, 989, 1103, 1185, 1226
Hpy8I GTNNAC 4 cut(s) 581, 589, 697, 1138
HpyAV CCTTC 5 cut(s) 534, 829, 887, 1137, 1196
HpyCH4III ACNGT 2 cut(s) 886, 1363
HpyCH4IV ACGT 2 cut(s) 562, 898
HpyCH4V TGCA 9 cut(s) 347, 624, 720, 853, 890, 1029, 1118, 1161, 1304
HpyF10VI GCNNNNNNNGC 4 cut(s) 401, 491, 1064, 1373
HpyF3I CTNAG 4 cut(s) 95, 270, 423, 1326
HpySE526I ACGT 2 cut(s) 562, 898
Kzo9I GATC 7 cut(s) 247, 552, 557, 913, 1181, 1222, 1228
LmnI GCTCC 1 cut(s) 76
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 6 cut(s) 189, 334, 1027, 1127, 1313, 1336
MaeI CTAG 3 cut(s) 338, 537, 728
MaeII ACGT 2 cut(s) 562, 898
MalI GATC 7 cut(s) 249, 554, 559, 915, 1183, 1224, 1230
MboI GATC 7 cut(s) 247, 552, 557, 913, 1181, 1222, 1228
MhlI GDGCHC 1 cut(s) 300
MlsI TGGCCA 1 cut(s) 1372
MluNI TGGCCA 1 cut(s) 1372
MmeI TCCRAC 2 cut(s) 58, 1149
Mox20I TGGCCA 1 cut(s) 1372
Mph1103I ATGCAT 3 cut(s) 626, 1031, 1120
MscI TGGCCA 1 cut(s) 1372
MseI TTAA 4 cut(s) 65, 279, 417, 543
MslI CAYNNNNRTG 3 cut(s) 318, 909, 1000
Msp20I TGGCCA 1 cut(s) 1372
Mva1269I GAATGC 1 cut(s) 904
MwoI GCNNNNNNNGC 4 cut(s) 401, 491, 1064, 1373
NdeII GATC 7 cut(s) 247, 552, 557, 913, 1181, 1222, 1228
NlaIV GGNNCC 1 cut(s) 1257
NsiI ATGCAT 3 cut(s) 626, 1031, 1120
NspI RCATGY 3 cut(s) 468, 624, 1029
PaeI GCATGC 1 cut(s) 624
PagI TCATGA 1 cut(s) 988
PceI AGGCCT 1 cut(s) 1009
PciI ACATGT 1 cut(s) 464
PctI GAATGC 1 cut(s) 904
PfeI GAWTC 2 cut(s) 652, 985
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 563
PscI ACATGT 1 cut(s) 464
PsiI TTATAA 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 1257
PspPI GGNCC 3 cut(s) 947, 1212, 1256
RsaI GTAC 4 cut(s) 362, 565, 831, 1357
RsaNI GTAC 4 cut(s) 361, 564, 830, 1356
RseI CAYNNNNRTG 3 cut(s) 318, 909, 1000
SaqAI TTAA 4 cut(s) 65, 279, 417, 543
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 7 cut(s) 247, 552, 557, 913, 1181, 1222, 1228
Sau96I GGNCC 3 cut(s) 947, 1212, 1256
SduI GDGCHC 1 cut(s) 300
SfaNI GCATC 6 cut(s) 189, 334, 1027, 1127, 1313, 1336
SfcI CTRYAG 3 cut(s) 609, 1053, 1359
SinI GGWCC 2 cut(s) 947, 1212
SmiMI CAYNNNNRTG 3 cut(s) 318, 909, 1000
SmlI CTYRAG 2 cut(s) 839, 1216
SmoI CTYRAG 2 cut(s) 839, 1216
SphI GCATGC 1 cut(s) 624
SseBI AGGCCT 1 cut(s) 1009
SspMI CTAG 3 cut(s) 338, 537, 728
StuI AGGCCT 1 cut(s) 1009
StyI CCWWGG 1 cut(s) 1251
TaaI ACNGT 2 cut(s) 886, 1363
TaiI ACGT 2 cut(s) 565, 901
TaqI TCGA 5 cut(s) 56, 412, 487, 822, 1130
TfiI GAWTC 2 cut(s) 652, 985
Tru1I TTAA 4 cut(s) 65, 279, 417, 543
Tru9I TTAA 4 cut(s) 65, 279, 417, 543
TscAI CASTG 2 cut(s) 307, 598
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 8 cut(s) 204, 297, 316, 518, 618, 894, 1005, 1229
TspRI CASTG 2 cut(s) 307, 598
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 2 cut(s) 947, 1212
XapI RAATTY 2 cut(s) 47, 1045
XbaI TCTAGA 1 cut(s) 536
XceI RCATGY 3 cut(s) 468, 624, 1029
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 3 cut(s) 338, 537, 728
Zsp2I ATGCAT 3 cut(s) 626, 1031, 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.