FvH4_6g17382

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000089
Physical Location & Seq
Forward (+)
11317463 .. 11319608
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17382.t1

Sequence Viewer

Length: 1317 bp
ATGGCAATAGGGAGAAAAAGAGGTAGAGTAGAAGGGCTTGAATTGGATGCACCAATTGCAGAAGCTGGTAATTTTCAACAAGAAGAAGTTCAACCTGAGGTTCTTGAGGCTACTCCTGATGCTGTCAAAGGGAAAACGAGAGGAAAGACTACCTTACAAGTCATTCCAACTGGAGAATTAAATGGTCAAACGCTTGAGTGGAATGAAAGAGGACAACTTGTGGGAGAATTATTAGTAAGATTTAGCTCAACTGTTGGGGTTATAGTAAGAGAGCAGGTGCCGATCAACATAGATGATTGGCGTAACGTTGAAGATAAGATAAAAAATGAAGCTTGGGGTATTTTGCTGCAAAAGTATAAGCTGGATCTGATTCACAAGACATTCATCTTGCAACAAATGGGAAGACTATGGAGAGCTTACAAATCAGAACTCTCAAGCAGCATTATGAGTGCCTTAGATTCTCAACGCAACAAGACAGAATGCGCAAGGCTTCTCAACTTACTTAGACCTGATGATGTGCCTCAGAAAGAGTGGGATGCATTCATGGCACAACGTAGTTCAGAGGCATGGAGGGAAATGAGTGACAAAATGAAGGCAATAAGGGGTAGACAACTTCTTCCTCACACTCTGAGCCGAAAGGCTGAGATGGAAGCTATACTTGCTGAGCAACCTCCTAATGAAGGGCATGTTCCTGTAAAGTATGATGTGTTGAGTCAAGTTCTTGGTAAGGAGAAAAATGGTCGTATTAGAGGCCTGGGAGCAGGTGTTACACCTTCAAGGGTAGATGCTCAGCTGCAAAGTAGCTCTTGGAAACAAGATTTTGAGGAGAAACTTAAGGCATACTCTGAGCGGACAAAGATTCTTGAAGATATAATTTTTGAATTAAGGGGAAATGCTTCTACTACTGGTGGAAGTGGACATGCTGGTTGTAGTAATGGTGGAAGTAAGCACACAAACAGCTCTGATATAGCACAAGATGGATATGAAAATGGTGAAAAAAGATTGAATCCTAGCCTTATGACAGCAAACTCAAAGTCAGTACAAGGGAGCACTCTGCTTGGTATTAATCAGGTCTGCAACATACTCAGCTGGGAGGGCACTGATGAAGTTGTGGCTAAAGGGAGAATCTTTGCAACTGACCCAGCAACCAAAGTGCATGGCTATAAGCATGGACCTGATTGTTACAGAGTCGAGATTGAGGAGGCTGTCAATCCAAGAGCTGAGTTCTTTCGTTTTCAGCTAGAATTTTCTGCCATGGAAGATGCAGTTGGAAGCACCATTGCTTGGCCAATTAAGTACATTGTCCCTCGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

439

Amino Acids

48.89

Weight (kDa)

6.45

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 359 - 435 2.9e-08 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 265, 752
Acc16I TGCGCA 1 cut(s) 484
Acc36I ACCTGC 2 cut(s) 265, 752
AccB1I GGYRCC 1 cut(s) 277
AccB7I CCANNNNNTGG 1 cut(s) 1284
AccBSI CCGCTC 1 cut(s) 850
AccI GTMKAC 1 cut(s) 607
AciI CCGC 1 cut(s) 850
AclI AACGTT 1 cut(s) 306
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 1286
AcsI RAATTY 1 cut(s) 1244
AfaI GTAC 2 cut(s) 1041, 1298
AfiI CCNNNNNNNGG 2 cut(s) 680, 1284
AflII CTTAAG 1 cut(s) 833
AgsI TTSAA 8 cut(s) 41, 77, 92, 311, 777, 866, 881, 1006
AjnI CCWGG 1 cut(s) 753
AjuI GAANNNNNNNTTGG 2 cut(s) 1251, 1283
Alw21I GWGCWC 1 cut(s) 1052
AlwI GGATC 1 cut(s) 372
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 2 cut(s) 751, 1286
ApeKI GCWGC 3 cut(s) 346, 438, 793
ApoI RAATTY 1 cut(s) 1244
ArsI GACNNNNNNTTYG 2 cut(s) 1019, 1051
AseI ATTAAT 1 cut(s) 1065
Asp700I GAANNNNTTC 2 cut(s) 87, 895
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 1172
AsuHPI GGTGA 1 cut(s) 1004
AvaII GGWCC 1 cut(s) 1172
AxyI CCTNAGG 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 1100
BalI TGGCCA 1 cut(s) 1288
BanI GGYRCC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 1052
BbvI GCAGC 3 cut(s) 333, 450, 780
BccI CCATC 2 cut(s) 640, 971
BciT130I CCWGG 1 cut(s) 755
BfaI CTAG 2 cut(s) 1011, 1241
BfrI CTTAAG 1 cut(s) 833
BfuAI ACCTGC 2 cut(s) 265, 752
BisI GCNGC 3 cut(s) 347, 439, 794
BlpI GCTNAGC 2 cut(s) 663, 789
BlsI GCNGC 3 cut(s) 348, 440, 795
Bme1390I CCNGG 1 cut(s) 755
Bme18I GGWCC 1 cut(s) 1172
BmgT120I GGNCC 1 cut(s) 1172
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 755
BmsI GCATC 5 cut(s) 37, 109, 526, 775, 1252
BpiI GAAGAC 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 192
Bpu1102I GCTNAGC 2 cut(s) 663, 789
BpuEI CTTGAG 3 cut(s) 125, 215, 418
BsaJI CCNNGG 2 cut(s) 754, 1254
BsaXI ACNNNNNCTCC 2 cut(s) 750, 780
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 1284
Bse1I ACTGG 2 cut(s) 175, 910
Bse21I CCTNAGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 1278
BseBI CCWGG 1 cut(s) 755
BseDI CCNNGG 2 cut(s) 754, 1254
BseGI GGATG 2 cut(s) 52, 541
BseLI CCNNNNNNNGG 2 cut(s) 680, 1284
BseMI GCAATG 1 cut(s) 1278
BseMII CTCAG 9 cut(s) 87, 536, 620, 633, 654, 803, 837, 1099, 1212
BseNI ACTGG 2 cut(s) 175, 910
BseRI GAGGAG 2 cut(s) 839, 1214
BseSI GKGCMC 1 cut(s) 1100
BseXI GCAGC 3 cut(s) 333, 450, 780
BseYI CCCAGC 2 cut(s) 1089, 1141
BshFI GGCC 2 cut(s) 753, 1288
BshNI GGYRCC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 1052
BslFI GGGAC 1 cut(s) 1289
BslI CCNNNNNNNGG 2 cut(s) 680, 1284
BsmFI GGGAC 1 cut(s) 1289
BsmI GAATGC 2 cut(s) 485, 539
BsnI GGCC 2 cut(s) 753, 1288
Bsp1286I GDGCHC 2 cut(s) 1052, 1100
Bsp143I GATC 2 cut(s) 282, 364
Bsp1720I GCTNAGC 2 cut(s) 663, 789
Bsp19I CCATGG 1 cut(s) 1254
BspACI CCGC 1 cut(s) 850
BspANI GGCC 2 cut(s) 753, 1288
BspCNI CTCAG 9 cut(s) 88, 535, 621, 634, 655, 802, 838, 1098, 1213
BspLI GGNNCC 1 cut(s) 279
BspMI ACCTGC 2 cut(s) 265, 752
BspPI GGATC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 277
BspTI CTTAAG 1 cut(s) 833
BsrBI CCGCTC 1 cut(s) 850
BsrDI GCAATG 1 cut(s) 1278
BsrI ACTGG 2 cut(s) 175, 910
BssECI CCNNGG 2 cut(s) 754, 1254
BssMI GATC 2 cut(s) 282, 364
BssT1I CCWWGG 1 cut(s) 1254
Bst2UI CCWGG 1 cut(s) 755
Bst4CI ACNGT 1 cut(s) 253
BstAFI CTTAAG 1 cut(s) 833
BstAPI GCANNNNNTGC 1 cut(s) 56
BstDSI CCRYGG 1 cut(s) 1254
BstENI CCTNNNNNAGG 1 cut(s) 678
BstF5I GGATG 2 cut(s) 52, 541
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 2 cut(s) 285, 367
BstMBI GATC 2 cut(s) 282, 364
BstMWI GCNNNNNNNGC 4 cut(s) 56, 545, 659, 1095
BstNI CCWGG 1 cut(s) 755
BstNSI RCATGY 2 cut(s) 689, 923
BstSCI CCNGG 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 1100
BstV1I GCAGC 3 cut(s) 333, 450, 780
BstV2I GAAGAC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
Bsu36I CCTNAGG 1 cut(s) 96
BsuRI GGCC 2 cut(s) 753, 1288
BtgI CCRYGG 1 cut(s) 1254
BtsCI GGATG 2 cut(s) 52, 541
BtsIMutI CAGTG 1 cut(s) 1098
BveI ACCTGC 2 cut(s) 265, 752
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 1172
Csp6I GTAC 2 cut(s) 1040, 1297
CviAII CATG 7 cut(s) 544, 567, 686, 920, 1157, 1169, 1255
CviQI GTAC 2 cut(s) 1040, 1297
DpnI GATC 2 cut(s) 284, 366
DpnII GATC 2 cut(s) 282, 364
EaeI YGGCCR 1 cut(s) 1286
Eco130I CCWWGG 1 cut(s) 1254
Eco147I AGGCCT 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 1172
Eco81I CCTNAGG 1 cut(s) 96
EcoNI CCTNNNNNAGG 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 753
EcoT14I CCWWGG 1 cut(s) 1254
EcoT22I ATGCAT 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 1254
FaeI CATG 7 cut(s) 547, 570, 689, 923, 1160, 1172, 1258
FalI AAGNNNNNCTT 6 cut(s) 137, 169, 642, 674, 790, 822
FaqI GGGAC 1 cut(s) 1289
FatI CATG 7 cut(s) 543, 566, 685, 919, 1156, 1168, 1254
FblI GTMKAC 1 cut(s) 607
Fnu4HI GCNGC 3 cut(s) 347, 439, 794
FokI GGATG 2 cut(s) 59, 548
Fsp4HI GCNGC 3 cut(s) 347, 439, 794
FspBI CTAG 2 cut(s) 1011, 1241
FspI TGCGCA 1 cut(s) 484
GlaI GCGC 1 cut(s) 484
GluI GCNGC 3 cut(s) 347, 439, 794
GsaI CCCAGC 2 cut(s) 1093, 1145
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 2 cut(s) 753, 1288
HhaI GCGC 1 cut(s) 485
Hin1II CATG 7 cut(s) 547, 570, 689, 923, 1160, 1172, 1258
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 7 cut(s) 370, 458, 712, 859, 1006, 1125, 1188
HphI GGTGA 1 cut(s) 1004
Hpy166II GTNNAC 2 cut(s) 608, 917
Hpy188I TCNGA 7 cut(s) 369, 427, 525, 562, 630, 847, 964
Hpy188III TCNNGA 4 cut(s) 104, 116, 863, 1192
Hpy8I GTNNAC 2 cut(s) 608, 917
HpyAV CCTTC 4 cut(s) 26, 586, 674, 783
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 2 cut(s) 306, 553
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 545, 659, 1095
HpySE526I ACGT 2 cut(s) 306, 553
Hsp92II CATG 7 cut(s) 547, 570, 689, 923, 1160, 1172, 1258
HspAI GCGC 1 cut(s) 483
Kzo9I GATC 2 cut(s) 282, 364
LmnI GCTCC 2 cut(s) 758, 1047
Lsp1109I GCAGC 3 cut(s) 333, 450, 780
LweI GCATC 5 cut(s) 37, 109, 526, 775, 1252
MaeI CTAG 2 cut(s) 1011, 1241
MaeII ACGT 2 cut(s) 306, 553
MaeIII GTNAC 4 cut(s) 302, 581, 766, 1181
MalI GATC 2 cut(s) 284, 366
MbiI CCGCTC 1 cut(s) 850
MboI GATC 2 cut(s) 282, 364
MboII GAAGA 6 cut(s) 95, 323, 414, 608, 878, 1271
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 1052, 1100
MlsI TGGCCA 1 cut(s) 1288
MluCI AATT 9 cut(s) 41, 54, 70, 176, 227, 873, 881, 1244, 1290
MluNI TGGCCA 1 cut(s) 1288
MlyI GAGTC 2 cut(s) 721, 1197
MmeI TCCRAC 2 cut(s) 191, 1249
Mox20I TGGCCA 1 cut(s) 1288
Mph1103I ATGCAT 1 cut(s) 541
MroXI GAANNNNTTC 2 cut(s) 87, 895
MscI TGGCCA 1 cut(s) 1288
MseI TTAA 6 cut(s) 179, 834, 884, 1065, 1293, 1315
Msp20I TGGCCA 1 cut(s) 1288
MspA1I CMGCKG 2 cut(s) 793, 1089
MspCI CTTAAG 1 cut(s) 833
MspR9I CCNGG 1 cut(s) 755
MunI CAATTG 1 cut(s) 54
Mva1269I GAATGC 2 cut(s) 485, 539
MvaI CCWGG 1 cut(s) 755
MwoI GCNNNNNNNGC 4 cut(s) 56, 545, 659, 1095
NcoI CCATGG 1 cut(s) 1254
NdeII GATC 2 cut(s) 282, 364
NlaIII CATG 7 cut(s) 547, 570, 689, 923, 1160, 1172, 1258
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 581
NsbI TGCGCA 1 cut(s) 484
NsiI ATGCAT 1 cut(s) 541
NspI RCATGY 2 cut(s) 689, 923
PaqCI CACCTGC 2 cut(s) 265, 752
PceI AGGCCT 1 cut(s) 753
PctI GAATGC 2 cut(s) 485, 539
PdmI GAANNNNTTC 2 cut(s) 87, 895
PfeI GAWTC 5 cut(s) 370, 458, 859, 1006, 1125
PflMI CCANNNNNTGG 1 cut(s) 1284
PkrI GCNGC 3 cut(s) 348, 440, 795
PleI GAGTC 2 cut(s) 720, 1196
PpsI GAGTC 2 cut(s) 720, 1196
PshBI ATTAAT 1 cut(s) 1065
Psp1406I AACGTT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 753
PspFI CCCAGC 2 cut(s) 1089, 1141
PspGI CCWGG 1 cut(s) 753
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 1172
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 2 cut(s) 793, 1089
RsaI GTAC 2 cut(s) 1041, 1298
RsaNI GTAC 2 cut(s) 1040, 1297
SaqAI TTAA 6 cut(s) 179, 834, 884, 1065, 1293, 1315
SatI GCNGC 3 cut(s) 347, 439, 794
Sau3AI GATC 2 cut(s) 282, 364
Sau96I GGNCC 1 cut(s) 1172
SchI GAGTC 2 cut(s) 721, 1197
ScrFI CCNGG 1 cut(s) 755
SduI GDGCHC 2 cut(s) 1052, 1100
SfaNI GCATC 5 cut(s) 37, 109, 526, 775, 1252
SinI GGWCC 1 cut(s) 1172
SmlI CTYRAG 4 cut(s) 104, 194, 433, 833
SmoI CTYRAG 4 cut(s) 104, 194, 433, 833
Sse9I AATT 9 cut(s) 41, 54, 70, 176, 227, 873, 881, 1244, 1290
SseBI AGGCCT 1 cut(s) 753
SsiI CCGC 1 cut(s) 850
SspMI CTAG 2 cut(s) 1011, 1241
StuI AGGCCT 1 cut(s) 753
StyD4I CCNGG 1 cut(s) 753
StyI CCWWGG 1 cut(s) 1254
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 2 cut(s) 309, 556
TaqI TCGA 1 cut(s) 1191
TasI AATT 9 cut(s) 41, 54, 70, 176, 227, 873, 881, 1244, 1290
TatI WGTACW 2 cut(s) 1039, 1296
TfiI GAWTC 5 cut(s) 370, 458, 859, 1006, 1125
Tru1I TTAA 6 cut(s) 179, 834, 884, 1065, 1293, 1315
Tru9I TTAA 6 cut(s) 179, 834, 884, 1065, 1293, 1315
TscAI CASTG 1 cut(s) 1105
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 3 cut(s) 346, 438, 793
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 8 cut(s) 219, 342, 373, 532, 605, 693, 999, 1119
TspRI CASTG 1 cut(s) 1105
Van91I CCANNNNNTGG 1 cut(s) 1284
Vha464I CTTAAG 1 cut(s) 833
VpaK11BI GGWCC 1 cut(s) 1172
VspI ATTAAT 1 cut(s) 1065
XagI CCTNNNNNAGG 1 cut(s) 678
XapI RAATTY 1 cut(s) 1244
XceI RCATGY 2 cut(s) 689, 923
XmiI GTMKAC 1 cut(s) 607
XmnI GAANNNNTTC 2 cut(s) 87, 895
XspI CTAG 2 cut(s) 1011, 1241
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.