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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 351 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 284 |
| AccII | CGCG | 1 cut(s) | 416 |
| AciI | CCGC | 4 cut(s) | 100, 237, 403, 414 |
| AcsI | RAATTY | 1 cut(s) | 189 |
| AcuI | CTGAAG | 2 cut(s) | 6, 311 |
| AfaI | GTAC | 1 cut(s) | 129 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 33, 295 |
| AgsI | TTSAA | 1 cut(s) | 250 |
| AluBI | AGCT | 1 cut(s) | 335 |
| AluI | AGCT | 1 cut(s) | 335 |
| Alw21I | GWGCWC | 2 cut(s) | 44, 305 |
| ApeKI | GCWGC | 2 cut(s) | 102, 357 |
| ApoI | RAATTY | 1 cut(s) | 189 |
| AspS9I | GGNCC | 1 cut(s) | 286 |
| AsuC2I | CCSGG | 1 cut(s) | 58 |
| AsuHPI | GGTGA | 1 cut(s) | 160 |
| AvaII | GGWCC | 1 cut(s) | 286 |
| Bbv12I | GWGCWC | 2 cut(s) | 44, 305 |
| BbvI | GCAGC | 2 cut(s) | 114, 344 |
| BccI | CCATC | 1 cut(s) | 104 |
| BclI | TGATCA | 1 cut(s) | 163 |
| BcnI | CCSGG | 1 cut(s) | 58 |
| BisI | GCNGC | 3 cut(s) | 103, 237, 358 |
| BlsI | GCNGC | 3 cut(s) | 104, 238, 359 |
| Bme1390I | CCNGG | 1 cut(s) | 58 |
| Bme18I | GGWCC | 1 cut(s) | 286 |
| BmgT120I | GGNCC | 1 cut(s) | 286 |
| BmiI | GGNNCC | 2 cut(s) | 370, 407 |
| BmrFI | CCNGG | 1 cut(s) | 58 |
| BmsI | GCATC | 2 cut(s) | 82, 390 |
| BpuEI | CTTGAG | 2 cut(s) | 157, 281 |
| BpuMI | CCSGG | 1 cut(s) | 58 |
| BsaJI | CCNNGG | 2 cut(s) | 180, 385 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 33, 295 |
| BseDI | CCNNGG | 2 cut(s) | 180, 385 |
| BseGI | GGATG | 3 cut(s) | 96, 213, 381 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 33, 295 |
| BseXI | GCAGC | 2 cut(s) | 114, 344 |
| Bsh1236I | CGCG | 1 cut(s) | 416 |
| BsiHKAI | GWGCWC | 2 cut(s) | 44, 305 |
| BsiSI | CCGG | 1 cut(s) | 57 |
| BslFI | GGGAC | 1 cut(s) | 329 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 33, 295 |
| BsmFI | GGGAC | 1 cut(s) | 329 |
| Bsp1286I | GDGCHC | 2 cut(s) | 44, 305 |
| Bsp1407I | TGTACA | 1 cut(s) | 127 |
| Bsp143I | GATC | 2 cut(s) | 8, 163 |
| Bsp19I | CCATGG | 1 cut(s) | 385 |
| BspACI | CCGC | 4 cut(s) | 100, 237, 403, 414 |
| BspFNI | CGCG | 1 cut(s) | 416 |
| BspHI | TCATGA | 1 cut(s) | 160 |
| BspLI | GGNNCC | 2 cut(s) | 370, 407 |
| BsrGI | TGTACA | 1 cut(s) | 127 |
| BssECI | CCNNGG | 2 cut(s) | 180, 385 |
| BssMI | GATC | 2 cut(s) | 8, 163 |
| BssT1I | CCWWGG | 2 cut(s) | 180, 385 |
| Bst4CI | ACNGT | 2 cut(s) | 226, 307 |
| BstAUI | TGTACA | 1 cut(s) | 127 |
| BstDEI | CTNAG | 2 cut(s) | 232, 377 |
| BstDSI | CCRYGG | 1 cut(s) | 385 |
| BstF5I | GGATG | 3 cut(s) | 96, 213, 381 |
| BstFNI | CGCG | 1 cut(s) | 416 |
| BstKTI | GATC | 2 cut(s) | 11, 166 |
| BstMBI | GATC | 2 cut(s) | 8, 163 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 387 |
| BstNSI | RCATGY | 1 cut(s) | 124 |
| BstSCI | CCNGG | 1 cut(s) | 56 |
| BstUI | CGCG | 1 cut(s) | 416 |
| BstV1I | GCAGC | 2 cut(s) | 114, 344 |
| BtgI | CCRYGG | 1 cut(s) | 385 |
| BtsCI | GGATG | 3 cut(s) | 96, 213, 381 |
| BtsIMutI | CAGTG | 1 cut(s) | 303 |
| CciI | TCATGA | 1 cut(s) | 160 |
| Cfr13I | GGNCC | 1 cut(s) | 286 |
| Csp6I | GTAC | 1 cut(s) | 128 |
| CviAII | CATG | 6 cut(s) | 74, 106, 121, 161, 386, 400 |
| CviJI | RGCY | 7 cut(s) | 19, 26, 236, 266, 335, 390, 408 |
| CviKI_1 | RGCY | 7 cut(s) | 19, 26, 236, 266, 335, 390, 408 |
| CviQI | GTAC | 1 cut(s) | 128 |
| DdeI | CTNAG | 2 cut(s) | 232, 377 |
| DpnI | GATC | 2 cut(s) | 10, 165 |
| DpnII | GATC | 2 cut(s) | 8, 163 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 284 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 284 |
| Eco130I | CCWWGG | 2 cut(s) | 180, 385 |
| Eco47I | GGWCC | 1 cut(s) | 286 |
| Eco57I | CTGAAG | 2 cut(s) | 6, 311 |
| EcoO109I | RGGNCCY | 1 cut(s) | 286 |
| EcoT14I | CCWWGG | 2 cut(s) | 180, 385 |
| ErhI | CCWWGG | 2 cut(s) | 180, 385 |
| FaeI | CATG | 6 cut(s) | 77, 109, 124, 164, 389, 403 |
| FaiI | YATR | 9 cut(s) | 75, 90, 107, 116, 122, 162, 351, 387, 401 |
| FaqI | GGGAC | 1 cut(s) | 329 |
| FatI | CATG | 6 cut(s) | 73, 105, 120, 160, 385, 399 |
| FbaI | TGATCA | 1 cut(s) | 163 |
| Fnu4HI | GCNGC | 3 cut(s) | 103, 237, 358 |
| FokI | GGATG | 3 cut(s) | 83, 220, 368 |
| Fsp4HI | GCNGC | 3 cut(s) | 103, 237, 358 |
| GluI | GCNGC | 3 cut(s) | 103, 237, 358 |
| HapII | CCGG | 1 cut(s) | 57 |
| Hin1II | CATG | 6 cut(s) | 77, 109, 124, 164, 389, 403 |
| HincII | GTYRAC | 1 cut(s) | 229 |
| HindII | GTYRAC | 1 cut(s) | 229 |
| HindIII | AAGCTT | 1 cut(s) | 333 |
| HinfI | GANTC | 3 cut(s) | 47, 84, 256 |
| HpaI | GTTAAC | 1 cut(s) | 229 |
| HpaII | CCGG | 1 cut(s) | 57 |
| HphI | GGTGA | 1 cut(s) | 160 |
| Hpy166II | GTNNAC | 1 cut(s) | 229 |
| Hpy188I | TCNGA | 2 cut(s) | 46, 168 |
| Hpy188III | TCNNGA | 3 cut(s) | 161, 260, 289 |
| Hpy8I | GTNNAC | 1 cut(s) | 229 |
| HpyAV | CCTTC | 3 cut(s) | 30, 145, 286 |
| HpyCH4III | ACNGT | 2 cut(s) | 226, 307 |
| HpyCH4V | TGCA | 1 cut(s) | 360 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 387 |
| HpyF3I | CTNAG | 2 cut(s) | 232, 377 |
| Hsp92II | CATG | 6 cut(s) | 77, 109, 124, 164, 389, 403 |
| Ksp22I | TGATCA | 1 cut(s) | 163 |
| KspAI | GTTAAC | 1 cut(s) | 229 |
| Kzo9I | GATC | 2 cut(s) | 8, 163 |
| LmnI | GCTCC | 1 cut(s) | 405 |
| LpnPI | CCDG | 3 cut(s) | 70, 227, 302 |
| Lsp1109I | GCAGC | 2 cut(s) | 114, 344 |
| LweI | GCATC | 2 cut(s) | 82, 390 |
| MaeIII | GTNAC | 1 cut(s) | 307 |
| MalI | GATC | 2 cut(s) | 10, 165 |
| MboI | GATC | 2 cut(s) | 8, 163 |
| MboII | GAAGA | 2 cut(s) | 181, 223 |
| MhlI | GDGCHC | 2 cut(s) | 44, 305 |
| MluCI | AATT | 3 cut(s) | 189, 201, 245 |
| MlyI | GAGTC | 2 cut(s) | 41, 78 |
| MnlI | CCTC | 4 cut(s) | 178, 256, 277, 357 |
| MseI | TTAA | 3 cut(s) | 30, 228, 421 |
| MspI | CCGG | 1 cut(s) | 57 |
| MspR9I | CCNGG | 1 cut(s) | 58 |
| MvnI | CGCG | 1 cut(s) | 416 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 387 |
| NciI | CCSGG | 1 cut(s) | 58 |
| NcoI | CCATGG | 1 cut(s) | 385 |
| NdeII | GATC | 2 cut(s) | 8, 163 |
| NlaIII | CATG | 6 cut(s) | 77, 109, 124, 164, 389, 403 |
| NlaIV | GGNNCC | 2 cut(s) | 370, 407 |
| NspI | RCATGY | 1 cut(s) | 124 |
| PagI | TCATGA | 1 cut(s) | 160 |
| PfeI | GAWTC | 1 cut(s) | 256 |
| PflFI | GACNNNGTC | 1 cut(s) | 320 |
| PkrI | GCNGC | 3 cut(s) | 104, 238, 359 |
| PleI | GAGTC | 2 cut(s) | 41, 78 |
| PpsI | GAGTC | 2 cut(s) | 41, 78 |
| PpuMI | RGGWCCY | 1 cut(s) | 286 |
| PsiI | TTATAA | 1 cut(s) | 351 |
| Psp5II | RGGWCCY | 1 cut(s) | 286 |
| PspN4I | GGNNCC | 2 cut(s) | 370, 407 |
| PspPI | GGNCC | 1 cut(s) | 286 |
| PspPPI | RGGWCCY | 1 cut(s) | 286 |
| PsyI | GACNNNGTC | 1 cut(s) | 320 |
| RsaI | GTAC | 1 cut(s) | 129 |
| RsaNI | GTAC | 1 cut(s) | 128 |
| SaqAI | TTAA | 3 cut(s) | 30, 228, 421 |
| SatI | GCNGC | 3 cut(s) | 103, 237, 358 |
| Sau3AI | GATC | 2 cut(s) | 8, 163 |
| Sau96I | GGNCC | 1 cut(s) | 286 |
| SchI | GAGTC | 2 cut(s) | 41, 78 |
| ScrFI | CCNGG | 1 cut(s) | 58 |
| SduI | GDGCHC | 2 cut(s) | 44, 305 |
| SetI | ASST | 5 cut(s) | 156, 182, 288, 297, 337 |
| SfaNI | GCATC | 2 cut(s) | 82, 390 |
| SinI | GGWCC | 1 cut(s) | 286 |
| SmlI | CTYRAG | 2 cut(s) | 136, 260 |
| SmoI | CTYRAG | 2 cut(s) | 136, 260 |
| Sse9I | AATT | 3 cut(s) | 189, 201, 245 |
| SsiI | CCGC | 4 cut(s) | 100, 237, 403, 414 |
| StyD4I | CCNGG | 1 cut(s) | 56 |
| StyI | CCWWGG | 2 cut(s) | 180, 385 |
| TaaI | ACNGT | 2 cut(s) | 226, 307 |
| TasI | AATT | 3 cut(s) | 189, 201, 245 |
| TatI | WGTACW | 1 cut(s) | 127 |
| TauI | GCSGC | 1 cut(s) | 239 |
| TfiI | GAWTC | 1 cut(s) | 256 |
| Tru1I | TTAA | 3 cut(s) | 30, 228, 421 |
| Tru9I | TTAA | 3 cut(s) | 30, 228, 421 |
| TscAI | CASTG | 1 cut(s) | 310 |
| TseI | GCWGC | 2 cut(s) | 102, 357 |
| TspDTI | ATGAA | 3 cut(s) | 90, 149, 224 |
| TspGWI | ACGGA | 1 cut(s) | 49 |
| TspRI | CASTG | 1 cut(s) | 310 |
| Tth111I | GACNNNGTC | 1 cut(s) | 320 |
| VpaK11BI | GGWCC | 1 cut(s) | 286 |
| XapI | RAATTY | 1 cut(s) | 189 |
| XceI | RCATGY | 1 cut(s) | 124 |