Rh1DG085300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000089
Physical Location & Seq
Reverse (-)
15753197 .. 15806798
53602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG085300.1

Sequence Viewer

Length: 1062 bp
ATGGAGGTCTTGGGTGAGGCTAGTGAAGTGGAATCTTCACTGGATATGGTGCCTGATCTGGTTGAGGAAGAGCAGGAAGCTTCTGAGTTGTTCCACAAAGCAGTAGAGTGGATAGAGGAATGGTTCAATGCAAATGTAAAGTACGAGCAGCTTTTCAAATCTAGCGACAATGATGCAGGTTCGTTAATTTGGGAGGCTCCTCCTCCTAGTTGGGTGAAGCTTCATTTTGACGGTGCATGTGATGTAAAAACTGGAAGGGTTGGTATGGGTTTAGTAGTTCTTGATGAATTTGGAGGGATGCAGGGTGCATTGGTTGTCACTACAAGAAAAGCTTACCAAGTTGACTTGGAGTCTTTGGCGGTTGAATTAGACGAGGAGAACGAGCAGCTTTTGAAAGAGAAGCTGTTAAGTGAGAAGTTCAGAAAAATGCGGAAGAAGCAAGAGTACACTCACACATTGAACCGAATGGGTTATGCACGGTTGGAGCACAAAATGAAAACGGAGAATCCTACTGAAGAAGTAACAAGAGTCAAATTGTGGAGTAAAGCGCATGAGAAAGGCGGTAAACCTGTTAATGAAGTTGTTGGTGCCATATTGGAAGGTTTAAAAGAGTGTAATGAGTCACAGCAGAACCCACCATCTGCAAATTCCATAAGGGATGATGCACTTGCAAAGTTGCAAGATCAATCACAGAGGCTTGCTCAGGTTGAAGCAAAGCTTGAAGCTCTTTTAAAGGCCACTCAGGAGGGAACTTCTCAACAGAACAGAAACTTAGAGAAAATGATAAATGCACATGCAACTACTTCTCAGTCACAACAATCAAGTCGACCAATCAATGCTCCAAGCAATGATCTTGAAAATAGAAGATGTGCACTTTTGAATTGGAACAATTATGAAGAAGATGAAGTGGTGGCTGAAGGGAAGATCTCTTCAACAAATCCAAGGTCCGTCTTACTCCAGCTCCAAATGCAGTGTCCCCTGTATAGACCCTCTATCTCTCTCAACACTGGCGGTGAAGACAGACTCTCTTTTGCCCTAGAAACCTCCGATATCCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

353

Amino Acids

39.76

Weight (kDa)

4.89

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 132 - 213 3.7e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 167
AccB1I GGYRCC 2 cut(s) 49, 587
AccI GTMKAC 1 cut(s) 826
AciI CCGC 4 cut(s) 359, 430, 561, 1011
AcsI RAATTY 2 cut(s) 287, 646
AcuI CTGAAG 2 cut(s) 534, 936
AfaI GTAC 2 cut(s) 143, 446
AhdI GACNNNNNGTC 1 cut(s) 349
AluBI AGCT 9 cut(s) 80, 151, 220, 332, 388, 403, 718, 725, 961
AluI AGCT 9 cut(s) 80, 151, 220, 332, 388, 403, 718, 725, 961
Alw21I GWGCWC 2 cut(s) 489, 874
Alw44I GTGCAC 1 cut(s) 870
AoxI GGCC 1 cut(s) 735
ApaLI GTGCAC 1 cut(s) 870
ApeKI GCWGC 2 cut(s) 148, 385
ApoI RAATTY 2 cut(s) 287, 646
ArsI GACNNNNNNTTYG 4 cut(s) 929, 958, 961, 990
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 945
AsuHPI GGTGA 3 cut(s) 26, 226, 1025
AvaII GGWCC 1 cut(s) 945
BaeGI GKGCMC 1 cut(s) 874
BanI GGYRCC 2 cut(s) 49, 587
BarI GAAGNNNNNNTAC 2 cut(s) 428, 460
BbsI GAAGAC 1 cut(s) 1023
Bbv12I GWGCWC 2 cut(s) 489, 874
BbvI GCAGC 2 cut(s) 160, 397
BccI CCATC 1 cut(s) 646
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BfaI CTAG 4 cut(s) 21, 162, 207, 1037
BfuAI ACCTGC 1 cut(s) 167
BglII AGATCT 1 cut(s) 924
BisI GCNGC 2 cut(s) 149, 386
BlsI GCNGC 2 cut(s) 150, 387
Bme18I GGWCC 1 cut(s) 945
BmeRI GACNNNNNGTC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 945
BmiI GGNNCC 3 cut(s) 51, 198, 589
BmsI GCATC 3 cut(s) 163, 288, 652
BpiI GAAGAC 1 cut(s) 1023
BplI GAGNNNNNCTC 2 cut(s) 685, 717
BpmI CTGGAG 1 cut(s) 941
Bpu10I CCTNAGC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 941
BsaXI ACNNNNNCTCC 2 cut(s) 945, 975
Bse1I ACTGG 3 cut(s) 45, 256, 1012
Bse3DI GCAATG 1 cut(s) 853
BseDI CCNNGG 1 cut(s) 941
BseGI GGATG 2 cut(s) 303, 664
BseMI GCAATG 1 cut(s) 853
BseMII CTCAG 4 cut(s) 75, 716, 755, 821
BseNI ACTGG 3 cut(s) 45, 256, 1012
BseRI GAGGAG 3 cut(s) 189, 192, 389
BseSI GKGCMC 1 cut(s) 874
BseXI GCAGC 2 cut(s) 160, 397
BshFI GGCC 1 cut(s) 737
BshNI GGYRCC 2 cut(s) 49, 587
BsiHKAI GWGCWC 2 cut(s) 489, 874
BslFI GGGAC 1 cut(s) 960
BsmFI GGGAC 1 cut(s) 960
BsnI GGCC 1 cut(s) 737
Bsp1286I GDGCHC 2 cut(s) 489, 874
Bsp143I GATC 4 cut(s) 55, 682, 850, 924
BspACI CCGC 4 cut(s) 359, 430, 561, 1011
BspANI GGCC 1 cut(s) 737
BspCNI CTCAG 4 cut(s) 76, 715, 754, 820
BspLI GGNNCC 3 cut(s) 51, 198, 589
BspMI ACCTGC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 49, 587
BsrDI GCAATG 1 cut(s) 853
BsrI ACTGG 3 cut(s) 45, 256, 1012
BssECI CCNNGG 1 cut(s) 941
BssMI GATC 4 cut(s) 55, 682, 850, 924
BssT1I CCWWGG 1 cut(s) 941
Bst4CI ACNGT 2 cut(s) 233, 480
Bst6I CTCTTC 2 cut(s) 63, 934
BstC8I GCNNGC 1 cut(s) 699
BstDEI CTNAG 5 cut(s) 84, 702, 741, 772, 807
BstF5I GGATG 2 cut(s) 303, 664
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 4 cut(s) 58, 685, 853, 927
BstMBI GATC 4 cut(s) 55, 682, 850, 924
BstMWI GCNNNNNNNGC 2 cut(s) 436, 967
BstNSI RCATGY 2 cut(s) 240, 797
BstSLI GKGCMC 1 cut(s) 874
BstV1I GCAGC 2 cut(s) 160, 397
BstV2I GAAGAC 1 cut(s) 1023
BstX2I RGATCY 1 cut(s) 924
BstYI RGATCY 1 cut(s) 924
BsuRI GGCC 1 cut(s) 737
BtsCI GGATG 2 cut(s) 303, 664
BtsI GCAGTG 1 cut(s) 977
BtsIMutI CAGTG 3 cut(s) 38, 977, 1005
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 699
CfoI GCGC 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 945
Csp6I GTAC 2 cut(s) 142, 445
CviAII CATG 3 cut(s) 237, 551, 794
CviQI GTAC 2 cut(s) 142, 445
DdeI CTNAG 5 cut(s) 84, 702, 741, 772, 807
DpnI GATC 4 cut(s) 57, 684, 852, 926
DpnII GATC 4 cut(s) 55, 682, 850, 924
DraI TTTAAA 2 cut(s) 606, 732
DriI GACNNNNNGTC 1 cut(s) 349
Eam1104I CTCTTC 2 cut(s) 63, 934
Eam1105I GACNNNNNGTC 1 cut(s) 349
EarI CTCTTC 2 cut(s) 63, 934
Eco130I CCWWGG 1 cut(s) 941
Eco32I GATATC 1 cut(s) 1051
Eco47I GGWCC 1 cut(s) 945
Eco57I CTGAAG 2 cut(s) 534, 936
EcoRV GATATC 1 cut(s) 1051
EcoT14I CCWWGG 1 cut(s) 941
ErhI CCWWGG 1 cut(s) 941
FaeI CATG 3 cut(s) 240, 554, 797
FalI AAGNNNNNCTT 4 cut(s) 316, 348, 702, 734
FaqI GGGAC 1 cut(s) 960
FatI CATG 3 cut(s) 236, 550, 793
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 2 cut(s) 149, 386
FokI GGATG 2 cut(s) 310, 671
Fsp4HI GCNGC 2 cut(s) 149, 386
FspBI CTAG 4 cut(s) 21, 162, 207, 1037
GlaI GCGC 1 cut(s) 549
GluI GCNGC 2 cut(s) 149, 386
GsuI CTGGAG 1 cut(s) 941
HaeIII GGCC 1 cut(s) 737
HhaI GCGC 1 cut(s) 550
Hin1II CATG 3 cut(s) 240, 554, 797
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HincII GTYRAC 2 cut(s) 343, 827
HindII GTYRAC 2 cut(s) 343, 827
HindIII AAGCTT 4 cut(s) 78, 218, 330, 716
HinfI GANTC 6 cut(s) 32, 350, 505, 528, 620, 1023
HphI GGTGA 3 cut(s) 26, 226, 1025
Hpy166II GTNNAC 5 cut(s) 343, 447, 566, 827, 872
Hpy188I TCNGA 3 cut(s) 85, 422, 1048
Hpy188III TCNNGA 4 cut(s) 281, 743, 854, 1054
Hpy8I GTNNAC 5 cut(s) 343, 447, 566, 827, 872
HpyAV CCTTC 3 cut(s) 249, 593, 911
HpyCH4III ACNGT 2 cut(s) 233, 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 436, 967
HpyF3I CTNAG 5 cut(s) 84, 702, 741, 772, 807
Hsp92II CATG 3 cut(s) 240, 554, 797
HspAI GCGC 1 cut(s) 548
Kzo9I GATC 4 cut(s) 55, 682, 850, 924
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 4 cut(s) 202, 484, 844, 966
Lsp1109I GCAGC 2 cut(s) 160, 397
LweI GCATC 3 cut(s) 163, 288, 652
MaeI CTAG 4 cut(s) 21, 162, 207, 1037
MaeIII GTNAC 4 cut(s) 316, 520, 621, 810
MalI GATC 4 cut(s) 57, 684, 852, 926
MboI GATC 4 cut(s) 55, 682, 850, 924
MflI RGATCY 1 cut(s) 924
MhlI GDGCHC 2 cut(s) 489, 874
MluCI AATT 7 cut(s) 186, 287, 365, 533, 646, 880, 889
MlyI GAGTC 4 cut(s) 359, 537, 629, 1017
MmeI TCCRAC 1 cut(s) 462
MseI TTAA 5 cut(s) 185, 407, 573, 605, 731
MwoI GCNNNNNNNGC 2 cut(s) 436, 967
NdeII GATC 4 cut(s) 55, 682, 850, 924
NlaIII CATG 3 cut(s) 240, 554, 797
NlaIV GGNNCC 3 cut(s) 51, 198, 589
NmuCI GTSAC 3 cut(s) 316, 621, 810
NspI RCATGY 2 cut(s) 240, 797
PciSI GCTCTTC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PfeI GAWTC 2 cut(s) 32, 505
PkrI GCNGC 2 cut(s) 150, 387
PleI GAGTC 4 cut(s) 358, 536, 628, 1017
PpsI GAGTC 4 cut(s) 358, 536, 628, 1017
PspN4I GGNNCC 3 cut(s) 51, 198, 589
PspPI GGNCC 1 cut(s) 945
PsuI RGATCY 1 cut(s) 924
RsaI GTAC 2 cut(s) 143, 446
RsaNI GTAC 2 cut(s) 142, 445
SalI GTCGAC 1 cut(s) 825
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 5 cut(s) 185, 407, 573, 605, 731
SatI GCNGC 2 cut(s) 149, 386
Sau3AI GATC 4 cut(s) 55, 682, 850, 924
Sau96I GGNCC 1 cut(s) 945
SchI GAGTC 4 cut(s) 359, 537, 629, 1017
SduI GDGCHC 2 cut(s) 489, 874
SfaNI GCATC 3 cut(s) 163, 288, 652
SinI GGWCC 1 cut(s) 945
Sse9I AATT 7 cut(s) 186, 287, 365, 533, 646, 880, 889
SsiI CCGC 4 cut(s) 359, 430, 561, 1011
SspMI CTAG 4 cut(s) 21, 162, 207, 1037
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 2 cut(s) 233, 480
TaqI TCGA 1 cut(s) 826
TasI AATT 7 cut(s) 186, 287, 365, 533, 646, 880, 889
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 2 cut(s) 32, 505
Tru1I TTAA 5 cut(s) 185, 407, 573, 605, 731
Tru9I TTAA 5 cut(s) 185, 407, 573, 605, 731
TscAI CASTG 3 cut(s) 45, 977, 1012
TseFI GTSAC 3 cut(s) 316, 621, 810
TseI GCWGC 2 cut(s) 148, 385
Tsp45I GTSAC 3 cut(s) 316, 621, 810
TspDTI ATGAA 6 cut(s) 212, 300, 509, 591, 909, 918
TspGWI ACGGA 2 cut(s) 515, 937
TspRI CASTG 3 cut(s) 45, 977, 1012
VneI GTGCAC 1 cut(s) 870
VpaK11BI GGWCC 1 cut(s) 945
XapI RAATTY 2 cut(s) 287, 646
XceI RCATGY 2 cut(s) 240, 797
XmiI GTMKAC 1 cut(s) 826
XspI CTAG 4 cut(s) 21, 162, 207, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.