DNA-directed 5'-3' RNA polymerase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF8039 | PF26133 | 170 - 247 | 3.2e-08 | Domain of unknown function (DUF8039) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 636 |
| AclWI | GGATC | 2 cut(s) | 569, 582 |
| AcoI | YGGCCR | 1 cut(s) | 665 |
| AfaI | GTAC | 3 cut(s) | 87, 591, 685 |
| AgsI | TTSAA | 3 cut(s) | 205, 498, 511 |
| AjnI | CCWGG | 1 cut(s) | 610 |
| AluBI | AGCT | 4 cut(s) | 193, 230, 656, 698 |
| AluI | AGCT | 4 cut(s) | 193, 230, 656, 698 |
| Alw21I | GWGCWC | 2 cut(s) | 109, 277 |
| Alw26I | GTCTC | 1 cut(s) | 646 |
| AlwI | GGATC | 2 cut(s) | 569, 582 |
| AoxI | GGCC | 2 cut(s) | 665, 719 |
| ApeKI | GCWGC | 3 cut(s) | 193, 692, 695 |
| AspLEI | GCGC | 1 cut(s) | 636 |
| AspS9I | GGNCC | 3 cut(s) | 65, 608, 720 |
| AsuII | TTCGAA | 1 cut(s) | 116 |
| AvaII | GGWCC | 2 cut(s) | 65, 608 |
| BamHI | GGATCC | 1 cut(s) | 574 |
| BauI | CACGAG | 1 cut(s) | 186 |
| Bbv12I | GWGCWC | 2 cut(s) | 109, 277 |
| BbvI | GCAGC | 3 cut(s) | 180, 679, 707 |
| BccI | CCATC | 3 cut(s) | 119, 205, 371 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 96, 130 |
| BciT130I | CCWGG | 1 cut(s) | 612 |
| BclI | TGATCA | 1 cut(s) | 70 |
| BcoDI | GTCTC | 1 cut(s) | 646 |
| BfmI | CTRYAG | 1 cut(s) | 693 |
| BisI | GCNGC | 3 cut(s) | 194, 693, 696 |
| BlpI | GCTNAGC | 1 cut(s) | 276 |
| BlsI | GCNGC | 3 cut(s) | 195, 694, 697 |
| Bme1390I | CCNGG | 1 cut(s) | 612 |
| Bme18I | GGWCC | 2 cut(s) | 65, 608 |
| BmgT120I | GGNCC | 3 cut(s) | 65, 608, 720 |
| BmiI | GGNNCC | 1 cut(s) | 576 |
| BmrFI | CCNGG | 1 cut(s) | 612 |
| BmsI | GCATC | 1 cut(s) | 34 |
| Bpu10I | CCTNAGC | 1 cut(s) | 699 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 276 |
| Bpu14I | TTCGAA | 1 cut(s) | 116 |
| BsaAI | YACGTR | 1 cut(s) | 89 |
| BseBI | CCWGG | 1 cut(s) | 612 |
| BseMII | CTCAG | 3 cut(s) | 282, 290, 582 |
| BseXI | GCAGC | 3 cut(s) | 180, 679, 707 |
| BsgI | GTGCAG | 1 cut(s) | 318 |
| Bsh1236I | CGCG | 1 cut(s) | 636 |
| BshFI | GGCC | 2 cut(s) | 667, 721 |
| BsiHKAI | GWGCWC | 2 cut(s) | 109, 277 |
| BsmAI | GTCTC | 1 cut(s) | 646 |
| BsmI | GAATGC | 2 cut(s) | 172, 280 |
| BsnI | GGCC | 2 cut(s) | 667, 721 |
| Bsp119I | TTCGAA | 1 cut(s) | 116 |
| Bsp1286I | GDGCHC | 2 cut(s) | 109, 277 |
| Bsp143I | GATC | 3 cut(s) | 70, 233, 574 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 276 |
| BspANI | GGCC | 2 cut(s) | 667, 721 |
| BspCNI | CTCAG | 3 cut(s) | 283, 289, 581 |
| BspFNI | CGCG | 1 cut(s) | 636 |
| BspHI | TCATGA | 1 cut(s) | 646 |
| BspLI | GGNNCC | 1 cut(s) | 576 |
| BspMAI | CTGCAG | 1 cut(s) | 697 |
| BspPI | GGATC | 2 cut(s) | 569, 582 |
| BspT104I | TTCGAA | 1 cut(s) | 116 |
| BssMI | GATC | 3 cut(s) | 70, 233, 574 |
| BssSI | CACGAG | 1 cut(s) | 186 |
| Bst2BI | CACGAG | 1 cut(s) | 186 |
| Bst2UI | CCWGG | 1 cut(s) | 612 |
| Bst4CI | ACNGT | 2 cut(s) | 325, 712 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 176 |
| BstBAI | YACGTR | 1 cut(s) | 89 |
| BstBI | TTCGAA | 1 cut(s) | 116 |
| BstC8I | GCNNGC | 2 cut(s) | 422, 690 |
| BstDEI | CTNAG | 4 cut(s) | 276, 291, 568, 699 |
| BstFNI | CGCG | 1 cut(s) | 636 |
| BstHHI | GCGC | 1 cut(s) | 636 |
| BstKTI | GATC | 3 cut(s) | 73, 236, 577 |
| BstMAI | GTCTC | 1 cut(s) | 646 |
| BstMBI | GATC | 3 cut(s) | 70, 233, 574 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 176, 417 |
| BstNI | CCWGG | 1 cut(s) | 612 |
| BstNSI | RCATGY | 1 cut(s) | 437 |
| BstSCI | CCNGG | 1 cut(s) | 610 |
| BstSFI | CTRYAG | 1 cut(s) | 693 |
| BstUI | CGCG | 1 cut(s) | 636 |
| BstV1I | GCAGC | 3 cut(s) | 180, 679, 707 |
| BstX2I | RGATCY | 1 cut(s) | 574 |
| BstYI | RGATCY | 1 cut(s) | 574 |
| BsuRI | GGCC | 2 cut(s) | 667, 721 |
| BtsIMutI | CAGTG | 2 cut(s) | 288, 717 |
| Cac8I | GCNNGC | 2 cut(s) | 422, 690 |
| CciI | TCATGA | 1 cut(s) | 646 |
| CfoI | GCGC | 1 cut(s) | 636 |
| Cfr13I | GGNCC | 3 cut(s) | 65, 608, 720 |
| Csp6I | GTAC | 3 cut(s) | 86, 590, 684 |
| CviAII | CATG | 2 cut(s) | 434, 647 |
| CviJI | RGCY | 8 cut(s) | 193, 230, 615, 656, 667, 698, 716, 721 |
| CviKI_1 | RGCY | 8 cut(s) | 193, 230, 615, 656, 667, 698, 716, 721 |
| CviQI | GTAC | 3 cut(s) | 86, 590, 684 |
| DdeI | CTNAG | 4 cut(s) | 276, 291, 568, 699 |
| DpnI | GATC | 3 cut(s) | 72, 235, 576 |
| DpnII | GATC | 3 cut(s) | 70, 233, 574 |
| EaeI | YGGCCR | 1 cut(s) | 665 |
| Eco47I | GGWCC | 2 cut(s) | 65, 608 |
| EcoO109I | RGGNCCY | 1 cut(s) | 65 |
| EcoRII | CCWGG | 1 cut(s) | 610 |
| FaeI | CATG | 2 cut(s) | 437, 650 |
| FaiI | YATR | 7 cut(s) | 96, 158, 435, 594, 648, 653, 725 |
| FatI | CATG | 2 cut(s) | 433, 646 |
| FbaI | TGATCA | 1 cut(s) | 70 |
| Fnu4HI | GCNGC | 3 cut(s) | 194, 693, 696 |
| Fsp4HI | GCNGC | 3 cut(s) | 194, 693, 696 |
| GlaI | GCGC | 1 cut(s) | 635 |
| GluI | GCNGC | 3 cut(s) | 194, 693, 696 |
| HaeIII | GGCC | 2 cut(s) | 667, 721 |
| HhaI | GCGC | 1 cut(s) | 636 |
| Hin1II | CATG | 2 cut(s) | 437, 650 |
| Hin6I | GCGC | 1 cut(s) | 634 |
| HinP1I | GCGC | 1 cut(s) | 634 |
| HincII | GTYRAC | 2 cut(s) | 37, 450 |
| HindII | GTYRAC | 2 cut(s) | 37, 450 |
| Hpy166II | GTNNAC | 2 cut(s) | 37, 450 |
| Hpy188I | TCNGA | 3 cut(s) | 238, 397, 571 |
| Hpy188III | TCNNGA | 2 cut(s) | 186, 647 |
| Hpy8I | GTNNAC | 2 cut(s) | 37, 450 |
| HpyAV | CCTTC | 5 cut(s) | 112, 123, 236, 461, 572 |
| HpyCH4III | ACNGT | 2 cut(s) | 325, 712 |
| HpyCH4IV | ACGT | 1 cut(s) | 88 |
| HpyCH4V | TGCA | 7 cut(s) | 170, 196, 299, 320, 437, 551, 695 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 176, 417 |
| HpyF3I | CTNAG | 4 cut(s) | 276, 291, 568, 699 |
| HpySE526I | ACGT | 1 cut(s) | 88 |
| Hsp92II | CATG | 2 cut(s) | 437, 650 |
| HspAI | GCGC | 1 cut(s) | 634 |
| Ksp22I | TGATCA | 1 cut(s) | 70 |
| Kzo9I | GATC | 3 cut(s) | 70, 233, 574 |
| LmnI | GCTCC | 1 cut(s) | 104 |
| LpnPI | CCDG | 4 cut(s) | 81, 277, 597, 624 |
| Lsp1109I | GCAGC | 3 cut(s) | 180, 679, 707 |
| LweI | GCATC | 1 cut(s) | 34 |
| MaeII | ACGT | 1 cut(s) | 88 |
| MaeIII | GTNAC | 4 cut(s) | 13, 143, 151, 738 |
| MalI | GATC | 3 cut(s) | 72, 235, 576 |
| MboI | GATC | 3 cut(s) | 70, 233, 574 |
| MboII | GAAGA | 4 cut(s) | 217, 262, 265, 486 |
| MflI | RGATCY | 1 cut(s) | 574 |
| MhlI | GDGCHC | 2 cut(s) | 109, 277 |
| MluCI | AATT | 1 cut(s) | 506 |
| MmeI | TCCRAC | 4 cut(s) | 141, 367, 507, 599 |
| MnlI | CCTC | 4 cut(s) | 71, 383, 565, 612 |
| MseI | TTAA | 3 cut(s) | 372, 518, 745 |
| MspR9I | CCNGG | 1 cut(s) | 612 |
| Mva1269I | GAATGC | 2 cut(s) | 172, 280 |
| MvaI | CCWGG | 1 cut(s) | 612 |
| MvnI | CGCG | 1 cut(s) | 636 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 176, 417 |
| NdeII | GATC | 3 cut(s) | 70, 233, 574 |
| NlaIII | CATG | 2 cut(s) | 437, 650 |
| NlaIV | GGNNCC | 1 cut(s) | 576 |
| NmuCI | GTSAC | 1 cut(s) | 13 |
| NspI | RCATGY | 1 cut(s) | 437 |
| NspV | TTCGAA | 1 cut(s) | 116 |
| PagI | TCATGA | 1 cut(s) | 646 |
| PctI | GAATGC | 2 cut(s) | 172, 280 |
| PkrI | GCNGC | 3 cut(s) | 195, 694, 697 |
| Ppu21I | YACGTR | 1 cut(s) | 89 |
| PpuMI | RGGWCCY | 1 cut(s) | 65 |
| Psp5II | RGGWCCY | 1 cut(s) | 65 |
| Psp6I | CCWGG | 1 cut(s) | 610 |
| PspGI | CCWGG | 1 cut(s) | 610 |
| PspN4I | GGNNCC | 1 cut(s) | 576 |
| PspPI | GGNCC | 3 cut(s) | 65, 608, 720 |
| PspPPI | RGGWCCY | 1 cut(s) | 65 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 582, 614 |
| PstI | CTGCAG | 1 cut(s) | 697 |
| PsuI | RGATCY | 1 cut(s) | 574 |
| RsaI | GTAC | 3 cut(s) | 87, 591, 685 |
| RsaNI | GTAC | 3 cut(s) | 86, 590, 684 |
| SaqAI | TTAA | 3 cut(s) | 372, 518, 745 |
| SatI | GCNGC | 3 cut(s) | 194, 693, 696 |
| Sau3AI | GATC | 3 cut(s) | 70, 233, 574 |
| Sau96I | GGNCC | 3 cut(s) | 65, 608, 720 |
| ScrFI | CCNGG | 1 cut(s) | 612 |
| SduI | GDGCHC | 2 cut(s) | 109, 277 |
| SfaNI | GCATC | 1 cut(s) | 34 |
| SfcI | CTRYAG | 1 cut(s) | 693 |
| SfuI | TTCGAA | 1 cut(s) | 116 |
| SinI | GGWCC | 2 cut(s) | 65, 608 |
| Sse9I | AATT | 1 cut(s) | 506 |
| StyD4I | CCNGG | 1 cut(s) | 610 |
| TaaI | ACNGT | 2 cut(s) | 325, 712 |
| TaiI | ACGT | 1 cut(s) | 91 |
| TaqI | TCGA | 2 cut(s) | 116, 232 |
| TasI | AATT | 1 cut(s) | 506 |
| TatI | WGTACW | 1 cut(s) | 589 |
| Tru1I | TTAA | 3 cut(s) | 372, 518, 745 |
| Tru9I | TTAA | 3 cut(s) | 372, 518, 745 |
| TscAI | CASTG | 2 cut(s) | 295, 717 |
| TseFI | GTSAC | 1 cut(s) | 13 |
| TseI | GCWGC | 3 cut(s) | 193, 692, 695 |
| Tsp45I | GTSAC | 1 cut(s) | 13 |
| TspDTI | ATGAA | 4 cut(s) | 273, 515, 552, 721 |
| TspRI | CASTG | 2 cut(s) | 295, 717 |
| VpaK11BI | GGWCC | 2 cut(s) | 65, 608 |
| XceI | RCATGY | 1 cut(s) | 437 |