Rh4AG178000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000089
Physical Location & Seq
Reverse (-)
44690146 .. 44702788
12643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG178000.1

Sequence Viewer

Length: 582 bp
ATGCATTATCAGACTCCAGCTCATGTCATGAACAACTATAAACAAGAGGGACCTCCTCAACAGAACAGAAACTTAGAGAAACTGATAAATGCACATGCAACTACTTCTCAGTCACAACAATCAAGTCGACCAATCAATGCTCCAAGCAATGATCTTGAAAATAGAAGATGTGCACTTTTGAATTGGAACAATTATGAAGAAGATGAAGTGGTGGTTGAAGGGAAGATCTCTTCAACAAATCCAAGTACAAAAGTTCATTGTGTGCCTCTTAGCTTGGACGAGATTGTTGGAAGGTTTGGGTTGATGTGGTGTTTGATGAGTATCAGACTATGGAAGTGTATAGAGCAACCATGGATGCCAAACAACTTGAAGATGTCAGTTGATAAATCATGGATGAAGTTAGGTCGGTCAAATCCAGAGTATTTTGATGGAGTCGCAAATTTCATTGATTATGCAAATAGGCATATCCCAGAGCTTTGTCAAAAAGATACAAAGATGACAAACCTGATGCAAAAAATTTCAATGAGTGAGCATGACACCTTTTGGGTTACCACTTGTTCTGCTTACCTCAATGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

193

Amino Acids

22.37

Weight (kDa)

6.29

Isoelectric Point (pI)

63.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 127
AcsI RAATTY 2 cut(s) 439, 516
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 6 cut(s) 158, 181, 218, 234, 370, 522
AluBI AGCT 3 cut(s) 20, 273, 475
AluI AGCT 3 cut(s) 20, 273, 475
Alw21I GWGCWC 1 cut(s) 175
Alw44I GTGCAC 1 cut(s) 171
ApaLI GTGCAC 1 cut(s) 171
ApoI RAATTY 2 cut(s) 439, 516
AspS9I GGNCC 1 cut(s) 50
AvaII GGWCC 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 175
BccI CCATC 1 cut(s) 422
BclI TGATCA 1 cut(s) 574
BglII AGATCT 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 345, 498
BsaBI GATNNNNATC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 2 cut(s) 360, 399
BseJI GATNNNNATC 1 cut(s) 320
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 175
BslFI GGGAC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 3 cut(s) 151, 225, 574
Bsp19I CCATGG 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 3 cut(s) 151, 225, 574
BssT1I CCWWGG 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 235
BstDEI CTNAG 3 cut(s) 73, 108, 269
BstDSI CCRYGG 1 cut(s) 350
BstEII GGTNACC 1 cut(s) 547
BstF5I GGATG 2 cut(s) 360, 399
BstKTI GATC 3 cut(s) 154, 228, 577
BstMBI GATC 3 cut(s) 151, 225, 574
BstNSI RCATGY 1 cut(s) 98
BstPI GGTNACC 1 cut(s) 547
BstSLI GKGCMC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 2 cut(s) 360, 399
CciI TCATGA 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 246
CviAII CATG 6 cut(s) 23, 28, 95, 351, 390, 533
CviJI RGCY 3 cut(s) 20, 273, 475
CviKI_1 RGCY 3 cut(s) 20, 273, 475
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 3 cut(s) 73, 108, 269
DpnI GATC 3 cut(s) 153, 227, 576
DpnII GATC 3 cut(s) 151, 225, 574
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 547
EcoO109I RGGNCCY 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 6 cut(s) 26, 31, 98, 354, 393, 536
FaqI GGGAC 1 cut(s) 63
FatI CATG 6 cut(s) 22, 27, 94, 350, 389, 532
FbaI TGATCA 1 cut(s) 574
FblI GTMKAC 1 cut(s) 127
FokI GGATG 2 cut(s) 367, 406
Hin1II CATG 6 cut(s) 26, 31, 98, 354, 393, 536
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HinfI GANTC 2 cut(s) 13, 432
Hpy166II GTNNAC 2 cut(s) 128, 173
Hpy188I TCNGA 2 cut(s) 12, 326
Hpy188III TCNNGA 3 cut(s) 28, 155, 416
Hpy8I GTNNAC 2 cut(s) 128, 173
HpyAV CCTTC 2 cut(s) 212, 285
HpyCH4V TGCA 6 cut(s) 4, 92, 98, 173, 455, 511
HpyF3I CTNAG 3 cut(s) 73, 108, 269
Hsp92II CATG 6 cut(s) 26, 31, 98, 354, 393, 536
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 3 cut(s) 151, 225, 574
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 4 cut(s) 30, 429, 483, 518
LweI GCATC 2 cut(s) 345, 498
MaeIII GTNAC 2 cut(s) 111, 547
MalI GATC 3 cut(s) 153, 227, 576
MboI GATC 3 cut(s) 151, 225, 574
MboII GAAGA 6 cut(s) 177, 209, 212, 222, 235, 382
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 4 cut(s) 181, 190, 439, 516
MlyI GAGTC 2 cut(s) 7, 441
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 5 cut(s) 40, 63, 66, 276, 578
Mph1103I ATGCAT 1 cut(s) 6
NcoI CCATGG 1 cut(s) 350
NdeII GATC 3 cut(s) 151, 225, 574
NlaIII CATG 6 cut(s) 26, 31, 98, 354, 393, 536
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 111
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 98
PagI TCATGA 1 cut(s) 27
PleI GAGTC 2 cut(s) 7, 440
PpsI GAGTC 2 cut(s) 7, 440
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
PspEI GGTNACC 1 cut(s) 547
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 50
PspPPI RGGWCCY 1 cut(s) 50
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SalI GTCGAC 1 cut(s) 126
Sau3AI GATC 3 cut(s) 151, 225, 574
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 2 cut(s) 7, 441
SduI GDGCHC 1 cut(s) 175
SetI ASST 9 cut(s) 22, 55, 275, 296, 406, 477, 507, 542, 570
SfaNI GCATC 2 cut(s) 345, 498
SinI GGWCC 1 cut(s) 50
Sse9I AATT 4 cut(s) 181, 190, 439, 516
StyI CCWWGG 1 cut(s) 350
TaqI TCGA 1 cut(s) 127
TaqII GACCGA 1 cut(s) 396
TasI AATT 4 cut(s) 181, 190, 439, 516
TatI WGTACW 1 cut(s) 245
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 6 cut(s) 44, 210, 219, 245, 410, 433
VneI GTGCAC 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 2 cut(s) 439, 516
XceI RCATGY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 127
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.