Rh3AG306500

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000089
Physical Location & Seq
Forward (+)
38138307 .. 38149037
10731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG306500.1

Sequence Viewer

Length: 1824 bp
ATGGCTGGTGATGCAAAGATGAGAAGTTCTCACAAGAGGAAACATGCTCGAGAAGCCACACAAGCATCAAAGGTTTCTCATGTAGGGGATAAGAATATACAAGTTAGTCCAGAACTATGTCAAGATACATTAAAATCATGTGATGAGAGTCCAGAACCTAACATCCAACACCACTCACCTTCCACAAAAGAAGTGGTACAAGAAGATGCACCACAGTCACAAGATTCAGCTGTAGACCTGAGAGGACTTAAGAAAACTAGGGGTCCAACGAAAATGAAAGATATTGCTGTGGAGCCTGGAAGTCAAATTCATGTTGAATTTACTGATAAAGGTGAACCATGTGGTGAGGGCTCAGTTAGTTTGTCTTCTTATTTAGGCCCACTTGTACGAGAACACGTACCTGTAACACTCCACGATTGGAGGAAGCTTGGTGATGACATAAAAGTAGTTTTGTGGAAATCAATTCAGGCTGTCAGTGATAAGTATAAGGCAATTAGGCGCAAGCAAATCCCACACACATGTAGTCGAAAAGGAATGGCTCGATTGGCAGAAGATATGAAAAGGAATAGTGCCGACCCTTCTTCTGTATCTAGAGTTAAAGTTTGGATCAGATCACGTACCGGAAAGGATGGTAAACCAGTAAACACTGAAGTTTCTAAAACTATAGAGAGGGTGAATGTAGTTGAAAGTGATTTGCCATCATCCTCAACAACTAATGTGAGAGAAGATGCTCTGTCTAAAGTCTTAGGACACGATAAACCTGGACGACTAAGAGGAATGGGAAGAGGAATGACCATCAGCAAATTGGCATTCTTTCAGACTAAGGACAAGTATGTGGCTAAGATGCAAGAGCAACAAATTAACATGCAAGACAGGATAAATCATTTGGAGAACTTGGTCAATAAATTAGTGAAAAATAAGATTCAACAAAGTGAGGAAGGGGAGAAAACATCTCCAATGAGCGTCAACACCAACTCATTGAATAAGTGCAAGCTACTAGATTGGAGTGGAACAGAGGACATTGTTGCTGAAGGTCGTTGGGTTTCAAGTGATCCAGAAGAGTCTGTCAATGAAATTCCCTTGGCACCTAATGCAATGAAAGTCTTGGTTGATATCTCAAATAAACCAGATGCTTTTCTTTGGAGGCCTACATCTAATATGTTTTGTTTTCAACATGCTCAAGGTAAAACAATAGCATGGCCTGCTGACAGAGTCATTTTTCAAATGGATCAGCAGTCTGACGAACAAGACAATTTATCTATGCCTTCGAGTTCGTACAACAACTCAAGGAACAAGTGCAAATTATTTGATTGGACTGGAAAAGATGAAATAGTTGCAAAAGAACGTTGGCATTCAAGTGATCCAAAAGCGTTGGTAAATGGTATTCCTCTTGGACCTAATGCCATGATAGTTTGGGTAGATATTCCAAAGAATCATGAAGCGTTTTTATGGAGGCTTACAATTGATATGACATGCATTGAAGATGCTGTGAATTCTGCTATAGCATGGCCTGCTAACAAAGTTGTTTTGGAAAAGATATCAGAAAGTCAAGATGGTGAAATTGCATCCTCTCATTCGAGTGTCAACTCCAAATCAAAGAAAAGGTGCAAGTTGATGGATGTTAGTGGATCAGGACAAATAGTTGCTGAAGGACGTTGGTCCTCAAGTGATCCAGATCAGTATAAGGATTGCATGCATGTCTGCAATCCCTGTGATGGTTATGTGAAAAATTTTGGCGTGTGGTTGAGGCATTTGATTTCTGATTTCTTGCTTACTGGTAATCCAATGACAAGTGTTCCAACCTTGCTCCACCTGCCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_23 Transposase_24

Protein Analysis

607

Amino Acids

67.78

Weight (kDa)

8.43

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 155 - 264 1e-17 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 429 - 510 9.3e-06 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1084
AccI GTMKAC 1 cut(s) 234
AclI AACGTT 1 cut(s) 1345
AclWI GGATC 6 cut(s) 614, 1046, 1236, 1355, 1636, 1664
AcsI RAATTY 5 cut(s) 306, 317, 1074, 1492, 1729
AcuI CTGAAG 3 cut(s) 669, 1050, 1668
AfaI GTAC 5 cut(s) 198, 387, 399, 619, 1277
AfiI CCNNNNNNNGG 1 cut(s) 1715
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 2 cut(s) 394, 518
AgsI TTSAA 9 cut(s) 317, 686, 926, 982, 1047, 1172, 1223, 1356, 1481
AjnI CCWGG 2 cut(s) 295, 760
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 230, 427, 994
AluI AGCT 3 cut(s) 230, 427, 994
AlwI GGATC 6 cut(s) 614, 1046, 1236, 1355, 1636, 1664
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 4 cut(s) 376, 1145, 1199, 1508
ApoI RAATTY 5 cut(s) 306, 317, 1074, 1492, 1729
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 4 cut(s) 263, 377, 1394, 1659
AsuHPI GGTGA 7 cut(s) 20, 168, 344, 356, 443, 685, 1568
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 3 cut(s) 263, 1394, 1659
BanI GGYRCC 1 cut(s) 1084
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 357
BccI CCATC 6 cut(s) 623, 706, 803, 1547, 1609, 1709
BciT130I CCWGG 2 cut(s) 297, 762
BfaI CTAG 4 cut(s) 258, 591, 998, 1822
BfmI CTRYAG 3 cut(s) 231, 663, 1500
BfrI CTTAAG 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 297, 762
Bme18I GGWCC 3 cut(s) 263, 1394, 1659
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 4 cut(s) 263, 377, 1394, 1659
BmiI GGNNCC 3 cut(s) 264, 294, 1086
BmrFI CCNGG 2 cut(s) 297, 762
BmsI GCATC 7 cut(s) 74, 196, 718, 834, 1120, 1474, 1574
BoxI GACNNNNGTC 1 cut(s) 1657
BpiI GAAGAC 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpuEI CTTGAG 3 cut(s) 1164, 1270, 1648
BsaAI YACGTR 2 cut(s) 397, 617
BsaBI GATNNNNATC 1 cut(s) 1674
BsaJI CCNNGG 1 cut(s) 1080
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 1 cut(s) 1715
Bse1I ACTGG 3 cut(s) 638, 1321, 1780
Bse3DI GCAATG 1 cut(s) 1101
Bse8I GATNNNNATC 1 cut(s) 1674
BseBI CCWGG 2 cut(s) 297, 762
BseDI CCNNGG 1 cut(s) 1080
BseGI GGATG 5 cut(s) 162, 634, 701, 1565, 1624
BseJI GATNNNNATC 1 cut(s) 1674
BseLI CCNNNNNNNGG 1 cut(s) 1715
BseMI GCAATG 1 cut(s) 1101
BseMII CTCAG 2 cut(s) 230, 366
BseNI ACTGG 3 cut(s) 638, 1321, 1780
BshFI GGCC 4 cut(s) 378, 1147, 1201, 1510
BshNI GGYRCC 1 cut(s) 1084
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 621
BslI CCNNNNNNNGG 1 cut(s) 1715
BsmI GAATGC 2 cut(s) 809, 1351
BsnI GGCC 4 cut(s) 378, 1147, 1201, 1510
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 8 cut(s) 606, 611, 1051, 1228, 1360, 1628, 1669, 1675
BspANI GGCC 4 cut(s) 378, 1147, 1201, 1510
BspCNI CTCAG 2 cut(s) 231, 365
BspHI TCATGA 1 cut(s) 1435
BspLI GGNNCC 3 cut(s) 264, 294, 1086
BspPI GGATC 6 cut(s) 614, 1046, 1236, 1355, 1636, 1664
BspT107I GGYRCC 1 cut(s) 1084
BspTI CTTAAG 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 1101
BsrI ACTGG 3 cut(s) 638, 1321, 1780
BssECI CCNNGG 1 cut(s) 1080
BssMI GATC 8 cut(s) 606, 611, 1051, 1228, 1360, 1628, 1669, 1675
BssT1I CCWWGG 1 cut(s) 1080
Bst2UI CCWGG 2 cut(s) 297, 762
Bst4CI ACNGT 1 cut(s) 216
Bst6I CTCTTC 2 cut(s) 778, 1053
BstAFI CTTAAG 1 cut(s) 248
BstAPI GCANNNNNTGC 3 cut(s) 1091, 1202, 1511
BstBAI YACGTR 2 cut(s) 397, 617
BstC8I GCNNGC 5 cut(s) 503, 992, 1203, 1512, 1694
BstDEI CTNAG 6 cut(s) 239, 352, 745, 770, 822, 840
BstF5I GGATG 5 cut(s) 162, 634, 701, 1565, 1624
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 8 cut(s) 609, 614, 1054, 1231, 1363, 1631, 1672, 1678
BstMBI GATC 8 cut(s) 606, 611, 1051, 1228, 1360, 1628, 1669, 1675
BstMWI GCNNNNNNNGC 8 cut(s) 11, 53, 62, 545, 1091, 1202, 1511, 1813
BstNI CCWGG 2 cut(s) 297, 762
BstNSI RCATGY 7 cut(s) 47, 522, 868, 1178, 1476, 1696, 1700
BstPAI GACNNNNGTC 1 cut(s) 1657
BstSCI CCNGG 2 cut(s) 295, 760
BstSFI CTRYAG 3 cut(s) 231, 663, 1500
BstV2I GAAGAC 1 cut(s) 357
BsuRI GGCC 4 cut(s) 378, 1147, 1201, 1510
BtsCI GGATG 5 cut(s) 162, 634, 701, 1565, 1624
BtsIMutI CAGTG 2 cut(s) 481, 645
Cac8I GCNNGC 5 cut(s) 503, 992, 1203, 1512, 1694
CciI TCATGA 1 cut(s) 1435
CfoI GCGC 1 cut(s) 501
Cfr13I GGNCC 4 cut(s) 263, 377, 1394, 1659
CseI GACGC 1 cut(s) 952
Csp6I GTAC 5 cut(s) 197, 386, 398, 618, 1276
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviQI GTAC 5 cut(s) 197, 386, 398, 618, 1276
DdeI CTNAG 6 cut(s) 239, 352, 745, 770, 822, 840
DpnI GATC 8 cut(s) 608, 613, 1053, 1230, 1362, 1630, 1671, 1677
DpnII GATC 8 cut(s) 606, 611, 1051, 1228, 1360, 1628, 1669, 1675
Eam1104I CTCTTC 2 cut(s) 778, 1053
EarI CTCTTC 2 cut(s) 778, 1053
Eco130I CCWWGG 1 cut(s) 1080
Eco147I AGGCCT 1 cut(s) 1147
Eco24I GRGCYC 1 cut(s) 353
Eco32I GATATC 2 cut(s) 1114, 1539
Eco47I GGWCC 3 cut(s) 263, 1394, 1659
Eco57I CTGAAG 3 cut(s) 669, 1050, 1668
Eco88I CYCGRG 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 1492
EcoRII CCWGG 2 cut(s) 295, 760
EcoRV GATATC 2 cut(s) 1114, 1539
EcoT14I CCWWGG 1 cut(s) 1080
EcoT22I ATGCAT 2 cut(s) 1478, 1698
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 1080
FblI GTMKAC 1 cut(s) 234
FokI GGATG 5 cut(s) 149, 641, 688, 1552, 1631
FriOI GRGCYC 1 cut(s) 353
FspBI CTAG 4 cut(s) 258, 591, 998, 1822
GlaI GCGC 1 cut(s) 500
HaeIII GGCC 4 cut(s) 378, 1147, 1201, 1510
HapII CCGG 1 cut(s) 621
HgaI GACGC 1 cut(s) 952
HhaI GCGC 1 cut(s) 501
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HincII GTYRAC 2 cut(s) 967, 1585
HindII GTYRAC 2 cut(s) 967, 1585
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 6 cut(s) 148, 224, 922, 1061, 1212, 1432
HpaII CCGG 1 cut(s) 621
HphI GGTGA 7 cut(s) 20, 168, 344, 356, 443, 685, 1568
Hpy166II GTNNAC 6 cut(s) 235, 335, 635, 643, 967, 1585
Hpy188I TCNGA 5 cut(s) 611, 819, 1240, 1543, 1762
Hpy8I GTNNAC 6 cut(s) 235, 335, 635, 643, 967, 1585
HpyAV CCTTC 6 cut(s) 189, 588, 932, 1025, 1275, 1643
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 4 cut(s) 396, 616, 1345, 1654
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 53, 62, 545, 1091, 1202, 1511, 1813
HpyF3I CTNAG 6 cut(s) 239, 352, 745, 770, 822, 840
HpySE526I ACGT 4 cut(s) 396, 616, 1345, 1654
HspAI GCGC 1 cut(s) 499
Kzo9I GATC 8 cut(s) 606, 611, 1051, 1228, 1360, 1628, 1669, 1675
LmnI GCTCC 2 cut(s) 292, 1812
LweI GCATC 7 cut(s) 74, 196, 718, 834, 1120, 1474, 1574
MaeI CTAG 4 cut(s) 258, 591, 998, 1822
MaeII ACGT 4 cut(s) 396, 616, 1345, 1654
MaeIII GTNAC 2 cut(s) 216, 403
MalI GATC 8 cut(s) 608, 613, 1053, 1230, 1362, 1630, 1671, 1677
MboI GATC 8 cut(s) 606, 611, 1051, 1228, 1360, 1628, 1669, 1675
MboII GAAGA 8 cut(s) 215, 357, 563, 573, 737, 795, 1070, 1493
MfeI CAATTG 1 cut(s) 1461
MhlI GDGCHC 1 cut(s) 353
MlyI GAGTC 3 cut(s) 157, 1070, 1221
MmeI TCCRAC 3 cut(s) 190, 290, 1823
Mph1103I ATGCAT 2 cut(s) 1478, 1698
MseI TTAA 4 cut(s) 131, 249, 597, 861
MslI CAYNNNNRTG 3 cut(s) 517, 1356, 1578
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 621
MspR9I CCNGG 2 cut(s) 297, 762
MunI CAATTG 1 cut(s) 1461
Mva1269I GAATGC 2 cut(s) 809, 1351
MvaI CCWGG 2 cut(s) 297, 762
MwoI GCNNNNNNNGC 8 cut(s) 11, 53, 62, 545, 1091, 1202, 1511, 1813
NdeII GATC 8 cut(s) 606, 611, 1051, 1228, 1360, 1628, 1669, 1675
NlaIV GGNNCC 3 cut(s) 264, 294, 1086
NmuCI GTSAC 1 cut(s) 216
NsiI ATGCAT 2 cut(s) 1478, 1698
NspI RCATGY 7 cut(s) 47, 522, 868, 1178, 1476, 1696, 1700
PaeI GCATGC 1 cut(s) 1696
PaeR7I CTCGAG 1 cut(s) 48
PagI TCATGA 1 cut(s) 1435
PceI AGGCCT 1 cut(s) 1147
PciI ACATGT 1 cut(s) 518
PctI GAATGC 2 cut(s) 809, 1351
PfeI GAWTC 3 cut(s) 224, 922, 1432
PflFI GACNNNGTC 1 cut(s) 1211
PleI GAGTC 3 cut(s) 156, 1069, 1220
PpsI GAGTC 3 cut(s) 156, 1069, 1220
Ppu21I YACGTR 2 cut(s) 397, 617
PscI ACATGT 1 cut(s) 518
PshAI GACNNNNGTC 1 cut(s) 1657
Psp1406I AACGTT 1 cut(s) 1345
Psp6I CCWGG 2 cut(s) 295, 760
PspGI CCWGG 2 cut(s) 295, 760
PspN4I GGNNCC 3 cut(s) 264, 294, 1086
PspPI GGNCC 4 cut(s) 263, 377, 1394, 1659
PsyI GACNNNGTC 1 cut(s) 1211
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 5 cut(s) 198, 387, 399, 619, 1277
RsaNI GTAC 5 cut(s) 197, 386, 398, 618, 1276
RseI CAYNNNNRTG 3 cut(s) 517, 1356, 1578
SaqAI TTAA 4 cut(s) 131, 249, 597, 861
Sau3AI GATC 8 cut(s) 606, 611, 1051, 1228, 1360, 1628, 1669, 1675
Sau96I GGNCC 4 cut(s) 263, 377, 1394, 1659
SchI GAGTC 3 cut(s) 157, 1070, 1221
ScrFI CCNGG 2 cut(s) 297, 762
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 7 cut(s) 74, 196, 718, 834, 1120, 1474, 1574
SfcI CTRYAG 3 cut(s) 231, 663, 1500
Sfr274I CTCGAG 1 cut(s) 48
SinI GGWCC 3 cut(s) 263, 1394, 1659
SlaI CTCGAG 1 cut(s) 48
SmiMI CAYNNNNRTG 3 cut(s) 517, 1356, 1578
SmlI CTYRAG 5 cut(s) 48, 248, 1179, 1285, 1663
SmoI CTYRAG 5 cut(s) 48, 248, 1179, 1285, 1663
SphI GCATGC 1 cut(s) 1696
SseBI AGGCCT 1 cut(s) 1147
SspMI CTAG 4 cut(s) 258, 591, 998, 1822
StuI AGGCCT 1 cut(s) 1147
StyD4I CCNGG 2 cut(s) 295, 760
StyI CCWWGG 1 cut(s) 1080
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 4 cut(s) 399, 619, 1348, 1657
TaqI TCGA 5 cut(s) 49, 526, 541, 1268, 1577
TfiI GAWTC 3 cut(s) 224, 922, 1432
Tru1I TTAA 4 cut(s) 131, 249, 597, 861
Tru9I TTAA 4 cut(s) 131, 249, 597, 861
TscAI CASTG 2 cut(s) 481, 652
TseFI GTSAC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 7 cut(s) 290, 299, 572, 1086, 1112, 1341, 1452
TspRI CASTG 2 cut(s) 481, 652
Tth111I GACNNNGTC 1 cut(s) 1211
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 3 cut(s) 263, 1394, 1659
XapI RAATTY 5 cut(s) 306, 317, 1074, 1492, 1729
XbaI TCTAGA 1 cut(s) 590
XceI RCATGY 7 cut(s) 47, 522, 868, 1178, 1476, 1696, 1700
XcmI CCANNNNNNNNNTGG 2 cut(s) 190, 802
XhoI CTCGAG 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 4 cut(s) 258, 591, 998, 1822
Zsp2I ATGCAT 2 cut(s) 1478, 1698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.