Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009697

Physical Location & Seq

Genomic Coordinates Forward (+)

22258677 .. 22263825

Gene Structure 5149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1143400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGGTATTGCAGCGGAGGTTGGAATATGGCTTCAATGGCTACCGGATGCCTGAGGTTCCTCGAGCTTCTAGATCAGCTAGGGGGAGGGGACCTATCAGGAGTAAACTTGAGGCCAATCAGATTCGTGCGTTTGAGAGTTTGGCTAGTGTAGCTGGTAAACTATTGCAGGAGAGCAAAGACCCTCTACCAACAAATGATTCTTGTGGAAAGGACCCGCATTTCAAATTTGACGTTATTACTAAAAGCGAACAACGGGATAAAGGAAACTTGTTGAAGGAAGAACCTTGTGAGTTGGGAAGCTGTGATGAGGAAACCTTTTTATACGTGCACGGGTTGCAAGAGCGCCGAGAAAGCTATACATTGAATGGGGTTTCACATTCTCAGGAAAATTTTAGTTACGAGATCAACTCGGTGTCAAAAAGTTTAGATTCAGAGGGAATCGATATTGGTAAGGGATTGGGTGCAGTTGATAGCAGAATTTTTTGTGGAAGCTATTCTAACAAAGTAGTCAATGACTCTCCCTTATCTGGAGAGTCCATTGTAGATCTACTTAAGAGGAAGCGAGCGACTGAACCATCACAGGATACCAGTATAAAGGAAGACAGAATCGAGTTTCTAGGCAGTTCAGAGGATGTAATGGAAGTGGAAGAAAGGCCTCATGAGCTGGTCAGTTCTGGACATGATGTGAAGACTCTGTTTTCAAGGGACTGCAAAAATCAAGATGGGAAAATAAGGCAAGTTAACCGCAATTGGAGAACTTGCTACGCACATCAAAGGTCACAAAAGATTTATCCTTTCAAAAAGAGAAAGCTCTTTAATTGGAGTCCACTTAATACATCTGATAGAGGGTGTAACTGTGAAAACATATTCAACTCCCCCGACAAGAGGGTAAATGGCGACAACTGCTGCGCAGTTGGATCATCCTCAGCGACGGGTCAGCAAGTGCCTCCCAAGTCTAACAATTTGAAGCTTAGTATTAAATCCTTCAAGGTCCCTGAGCTCTTTATTGAAGTTCCTACAACCGCAACTGTTGGTTCATTGAAGAGGACAGTAATGGAGGCAGTAACGTCAATACTCGGAGATGGATTACATGTTGGCATCCTGGTCCAGGGAAAAAAGGTCAGAGATGACAACAAGACTCTACTTCAGACAGGGATTTCTCAGGATGACAAGCGACATAATTTGGGTTTTATATTGGAGCCCAAACGGGCAAAGCTTACGTACCCTCCATTCGGTGAAGATCCATCTTTGGTATCTGGCAGGTCTCAGGAGTTAACCAGGCATTCGACATCTTTGGTGTCACAACCGGGGACTTCAGATGTCTCGATGAATCCTCCGGTACTCAGTTTGGGTGGCTGCAATGATGGAGACTTCAAGGAAGTTCCTTCTCTTGCTAGTACTTCGATTGGCAAAACTCCGCCAACATGCCAAGCTCTTGTTGCAGTTCCACCAATTAGCATGAAGGCATTGGCTGTGGTTCCTTTCCATCGGAAATCTGGGCATCAAGAGTATGTACAGCGCCGAATCAGGAGGCCTTTCTCTGTTCCAGAAGTAGAAGCATTGGTTCAGGCTGTTGAGAAACTTGGAACGGGAAGGTGGCGTGATGTTAAGTTGCGTGCTTTTGAAAGTGAAAAACATCGAACTTACGTGGATTTGAAGGACAAGTGGAAAACACTGGTGCACACAGCAAGGATCTCCCCGCAGCAAAGGAGAGGAGAGCCGGTTCCACAGGAGCTTTTGGACCGGGTCCTTGCCACCCATGCCTACTGGTCTCATCGGCACGCCAAGCAGCAGGCGAAAGCGGCGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

604

Amino Acids

67.35

Weight (kDa)

9.19

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_TPR1	PF23603	322 - 389	1e-38	Telomere repeat-binding protein 1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13540 FvH4_6g13540
malus_domestica	MD04G1130300.v1.1 MD12G1143400.v1.1
prunus_persica	Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1
pyrus_communis	pycom12g13810
rosa_chinensis	RchiOBHm_Chr3g0466401
rosa_laevigata	RLG00000024577
rosa_multiflora	Rmu_sc0001716.1_g000002 Rmu_sc0003332.1_g000029 Rmu_sc0003480.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414500
rosa_rugosa	Rorug03G0081500 Rorug03G0081600 Rorug03G0081700
rosa_samantha	Rh3AG128100 Rh3BG149400 Rh3DG150100
rosa_wichuraiana	Rw3G012100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	910
Acc36I	ACCTGC	1 cut(s)	1251
AciI	CCGC	8 cut(s)	13, 215, 745, 1023, 1418, 1700, 1802, 1805
AclWI	GGATC	3 cut(s)	925, 1235, 1700
AcsI	RAATTY	3 cut(s)	224, 388, 477
AcuI	CTGAAG	2 cut(s)	1130, 1299
AfaI	GTAC	4 cut(s)	1223, 1341, 1399, 1515
AfiI	CCNNNNNNNGG	4 cut(s)	527, 885, 1108, 1232
AflII	CTTAAG	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	1090
AjnI	CCWGG	3 cut(s)	1101, 1107, 1277
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AloI	GAACNNNNNNTCC	2 cut(s)	1707, 1739
Alw21I	GWGCWC	3 cut(s)	330, 1002, 1683
Alw26I	GTCTC	4 cut(s)	1269, 1327, 1362, 1776
Alw44I	GTGCAC	2 cut(s)	326, 1679
AlwI	GGATC	3 cut(s)	925, 1235, 1700
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	3 cut(s)	111, 653, 1532
ApaLI	GTGCAC	2 cut(s)	326, 1679
ApeKI	GCWGC	5 cut(s)	10, 906, 1356, 1702, 1789
ApoI	RAATTY	3 cut(s)	224, 388, 477
Asp700I	GAANNNNTTC	1 cut(s)	493
AspLEI	GCGC	3 cut(s)	345, 911, 1521
AspS9I	GGNCC	6 cut(s)	89, 211, 991, 1105, 1741, 1747
AsuC2I	CCSGG	2 cut(s)	1308, 1745
AsuHPI	GGTGA	1 cut(s)	1247
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	6 cut(s)	89, 211, 991, 1105, 1741, 1747
AxyI	CCTNAGG	1 cut(s)	51
BaeGI	GKGCMC	2 cut(s)	330, 1683
BanII	GRGCYC	2 cut(s)	1002, 1203
BbsI	GAAGAC	2 cut(s)	606, 695
Bbv12I	GWGCWC	3 cut(s)	330, 1002, 1683
BbvCI	CCTCAGC	1 cut(s)	925
BbvI	GCAGC	5 cut(s)	22, 893, 1343, 1714, 1801
BccI	CCATC	6 cut(s)	583, 716, 1076, 1252, 1358, 1494
BciT130I	CCWGG	3 cut(s)	1103, 1109, 1279
BciVI	GTATCC	1 cut(s)	577
BcnI	CCSGG	2 cut(s)	1308, 1745
BcoDI	GTCTC	4 cut(s)	1269, 1327, 1362, 1776
BfaI	CTAG	5 cut(s)	69, 78, 144, 617, 1395
BfoI	RGCGCY	2 cut(s)	346, 1522
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	1251
BfuI	GTATCC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	6 cut(s)	11, 907, 1357, 1703, 1790, 1803
BlsI	GCNGC	6 cut(s)	12, 908, 1358, 1704, 1791, 1804
BmcAI	AGTACT	1 cut(s)	1399
Bme1390I	CCNGG	5 cut(s)	1103, 1109, 1279, 1308, 1745
Bme18I	GGWCC	6 cut(s)	89, 211, 991, 1105, 1741, 1747
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	6 cut(s)	89, 211, 991, 1105, 1741, 1747
BmiI	GGNNCC	8 cut(s)	57, 90, 213, 993, 1200, 1479, 1725, 1748
BmrFI	CCNGG	5 cut(s)	1103, 1109, 1279, 1308, 1745
BmsI	GCATC	3 cut(s)	36, 1107, 1510
BpiI	GAAGAC	2 cut(s)	606, 695
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpmI	CTGGAG	1 cut(s)	549
Bpu10I	CCTNAGC	2 cut(s)	925, 996
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	1308, 1745
Bsa29I	ATCGAT	1 cut(s)	441
BsaAI	YACGTR	3 cut(s)	325, 1221, 1648
BsaI	GGTCTC	2 cut(s)	1269, 1776
BsaJI	CCNNGG	2 cut(s)	1108, 1307
BsaWI	WCCGGW	2 cut(s)	42, 1336
BsaXI	ACNNNNNCTCC	4 cut(s)	1210, 1240, 1707, 1737
Bsc4I	CCNNNNNNNGG	4 cut(s)	527, 885, 1108, 1232
Bse118I	RCCGGY	1 cut(s)	1720
Bse1I	ACTGG	3 cut(s)	588, 1680, 1772
Bse21I	CCTNAGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	1366
BseBI	CCWGG	3 cut(s)	1103, 1109, 1279
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	1108, 1307
BseGI	GGATG	5 cut(s)	51, 637, 920, 1098, 1171
BseLI	CCNNNNNNNGG	4 cut(s)	527, 885, 1108, 1232
BseMI	GCAATG	1 cut(s)	1366
BseMII	CTCAG	7 cut(s)	42, 395, 939, 987, 1175, 1280, 1357
BseNI	ACTGG	3 cut(s)	588, 1680, 1772
BseRI	GAGGAG	1 cut(s)	1728
BseSI	GKGCMC	2 cut(s)	330, 1683
BseXI	GCAGC	5 cut(s)	22, 893, 1343, 1714, 1801
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	3 cut(s)	113, 655, 1534
BshVI	ATCGAT	1 cut(s)	441
BsiHKAI	GWGCWC	3 cut(s)	330, 1002, 1683
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	5 cut(s)	43, 1307, 1337, 1721, 1744
BslFI	GGGAC	4 cut(s)	102, 719, 977, 1324
BslI	CCNNNNNNNGG	4 cut(s)	527, 885, 1108, 1232
BsmAI	GTCTC	4 cut(s)	1269, 1327, 1362, 1776
BsmFI	GGGAC	4 cut(s)	102, 719, 977, 1324
BsmI	GAATGC	1 cut(s)	1282
BsnI	GGCC	3 cut(s)	113, 655, 1534
Bso31I	GGTCTC	2 cut(s)	1269, 1776
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	4 cut(s)	330, 1002, 1203, 1683
Bsp1407I	TGTACA	1 cut(s)	1513
Bsp143I	GATC	6 cut(s)	71, 402, 544, 917, 1240, 1692
BspACI	CCGC	8 cut(s)	13, 215, 745, 1023, 1418, 1700, 1802, 1805
BspANI	GGCC	3 cut(s)	113, 655, 1534
BspCNI	CTCAG	7 cut(s)	43, 394, 938, 988, 1174, 1279, 1356
BspDI	ATCGAT	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	8 cut(s)	57, 90, 213, 993, 1200, 1479, 1725, 1748
BspMI	ACCTGC	1 cut(s)	1251
BspPI	GGATC	3 cut(s)	925, 1235, 1700
BspTI	CTTAAG	1 cut(s)	551
BspTNI	GGTCTC	2 cut(s)	1269, 1776
BsrDI	GCAATG	1 cut(s)	1366
BsrFI	RCCGGY	1 cut(s)	1720
BsrGI	TGTACA	1 cut(s)	1513
BsrI	ACTGG	3 cut(s)	588, 1680, 1772
BssAI	RCCGGY	1 cut(s)	1720
BssECI	CCNNGG	2 cut(s)	1108, 1307
BssMI	GATC	6 cut(s)	71, 402, 544, 917, 1240, 1692
Bst2UI	CCWGG	3 cut(s)	1103, 1109, 1279
Bst4CI	ACNGT	3 cut(s)	857, 1030, 1051
Bst6I	CTCTTC	1 cut(s)	1037
BstAFI	CTTAAG	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstAUI	TGTACA	1 cut(s)	1513
BstBAI	YACGTR	3 cut(s)	325, 1221, 1648
BstC8I	GCNNGC	4 cut(s)	564, 1617, 1782, 1794
BstDEI	CTNAG	8 cut(s)	51, 381, 925, 971, 996, 1161, 1266, 1343
BstENI	CCTNNNNNAGG	1 cut(s)	1106
BstF5I	GGATG	5 cut(s)	51, 637, 920, 1098, 1171
BstH2I	RGCGCY	2 cut(s)	346, 1522
BstHHI	GCGC	3 cut(s)	345, 911, 1521
BstKTI	GATC	6 cut(s)	74, 405, 547, 920, 1243, 1695
BstMAI	GTCTC	4 cut(s)	1269, 1327, 1362, 1776
BstMBI	GATC	6 cut(s)	71, 402, 544, 917, 1240, 1692
BstNI	CCWGG	3 cut(s)	1103, 1109, 1279
BstNSI	RCATGY	2 cut(s)	1094, 1428
BstSCI	CCNGG	5 cut(s)	1101, 1107, 1277, 1306, 1743
BstSLI	GKGCMC	2 cut(s)	330, 1683
BstSNI	TACGTA	1 cut(s)	1221
BstV1I	GCAGC	5 cut(s)	22, 893, 1343, 1714, 1801
BstV2I	GAAGAC	2 cut(s)	606, 695
BstX2I	RGATCY	3 cut(s)	544, 1240, 1692
BstYI	RGATCY	3 cut(s)	544, 1240, 1692
Bsu15I	ATCGAT	1 cut(s)	441
Bsu36I	CCTNAGG	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	3 cut(s)	113, 655, 1534
BsuTUI	ATCGAT	1 cut(s)	441
BtsCI	GGATG	5 cut(s)	51, 637, 920, 1098, 1171
BtsIMutI	CAGTG	1 cut(s)	1673
BveI	ACCTGC	1 cut(s)	1251
Cac8I	GCNNGC	4 cut(s)	564, 1617, 1782, 1794
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	3 cut(s)	345, 911, 1521
Cfr10I	RCCGGY	1 cut(s)	1720
Cfr13I	GGNCC	6 cut(s)	89, 211, 991, 1105, 1741, 1747
ClaI	ATCGAT	1 cut(s)	441
Csp6I	GTAC	4 cut(s)	1222, 1340, 1398, 1514
CviAII	CATG	6 cut(s)	659, 680, 1091, 1425, 1459, 1760
CviQI	GTAC	4 cut(s)	1222, 1340, 1398, 1514
DdeI	CTNAG	8 cut(s)	51, 381, 925, 971, 996, 1161, 1266, 1343
DpnI	GATC	6 cut(s)	73, 404, 546, 919, 1242, 1694
DpnII	GATC	6 cut(s)	71, 402, 544, 917, 1240, 1692
Eam1104I	CTCTTC	1 cut(s)	1037
EarI	CTCTTC	1 cut(s)	1037
EciI	GGCGGA	1 cut(s)	1407
Ecl136II	GAGCTC	1 cut(s)	1000
Eco105I	TACGTA	1 cut(s)	1221
Eco147I	AGGCCT	2 cut(s)	655, 1534
Eco24I	GRGCYC	2 cut(s)	1002, 1203
Eco31I	GGTCTC	2 cut(s)	1269, 1776
Eco47I	GGWCC	6 cut(s)	89, 211, 991, 1105, 1741, 1747
Eco53kI	GAGCTC	1 cut(s)	1000
Eco57I	CTGAAG	2 cut(s)	1130, 1299
Eco81I	CCTNAGG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	1000
EcoNI	CCTNNNNNAGG	1 cut(s)	1106
EcoO109I	RGGNCCY	4 cut(s)	89, 211, 991, 1747
EcoRII	CCWGG	3 cut(s)	1101, 1107, 1277
EcoT38I	GRGCYC	2 cut(s)	1002, 1203
FaeI	CATG	6 cut(s)	662, 683, 1094, 1428, 1462, 1763
FaqI	GGGAC	4 cut(s)	102, 719, 977, 1324
FatI	CATG	6 cut(s)	658, 679, 1090, 1424, 1458, 1759
FauI	CCCGC	2 cut(s)	222, 1707
Fnu4HI	GCNGC	6 cut(s)	11, 907, 1357, 1703, 1790, 1803
FokI	GGATG	5 cut(s)	58, 644, 907, 1085, 1178
FriOI	GRGCYC	2 cut(s)	1002, 1203
Fsp4HI	GCNGC	6 cut(s)	11, 907, 1357, 1703, 1790, 1803
FspBI	CTAG	5 cut(s)	69, 78, 144, 617, 1395
FspI	TGCGCA	1 cut(s)	910
GlaI	GCGC	3 cut(s)	344, 910, 1520
GluI	GCNGC	6 cut(s)	11, 907, 1357, 1703, 1790, 1803
GsuI	CTGGAG	1 cut(s)	549
HaeII	RGCGCY	2 cut(s)	346, 1522
HaeIII	GGCC	3 cut(s)	113, 655, 1534
HapII	CCGG	5 cut(s)	43, 1307, 1337, 1721, 1744
HhaI	GCGC	3 cut(s)	345, 911, 1521
Hin1II	CATG	6 cut(s)	662, 683, 1094, 1428, 1462, 1763
Hin6I	GCGC	3 cut(s)	343, 909, 1519
HinP1I	GCGC	3 cut(s)	343, 909, 1519
HincII	GTYRAC	2 cut(s)	742, 1275
HindII	GTYRAC	2 cut(s)	742, 1275
HindIII	AAGCTT	2 cut(s)	968, 1214
HpaI	GTTAAC	2 cut(s)	742, 1275
HpaII	CCGG	5 cut(s)	43, 1307, 1337, 1721, 1744
HphI	GGTGA	1 cut(s)	1247
Hpy166II	GTNNAC	7 cut(s)	104, 158, 328, 742, 827, 1275, 1681
Hpy8I	GTNNAC	7 cut(s)	104, 158, 328, 742, 827, 1275, 1681
Hpy99I	CGWCG	1 cut(s)	934
HpyAV	CCTTC	6 cut(s)	268, 994, 1395, 1456, 1587, 1651
HpyCH4III	ACNGT	3 cut(s)	857, 1030, 1051
HpyCH4IV	ACGT	5 cut(s)	231, 324, 1067, 1220, 1647
HpyCH4V	TGCA	9 cut(s)	10, 166, 328, 337, 464, 711, 1359, 1442, 1681
HpyF3I	CTNAG	8 cut(s)	51, 381, 925, 971, 996, 1161, 1266, 1343
HpySE526I	ACGT	5 cut(s)	231, 324, 1067, 1220, 1647
Hsp92II	CATG	6 cut(s)	662, 683, 1094, 1428, 1462, 1763
HspAI	GCGC	3 cut(s)	343, 909, 1519
KspAI	GTTAAC	2 cut(s)	742, 1275
Kzo9I	GATC	6 cut(s)	71, 402, 544, 917, 1240, 1692
LmnI	GCTCC	2 cut(s)	1198, 1732
Lsp1109I	GCAGC	5 cut(s)	22, 893, 1343, 1714, 1801
LweI	GCATC	3 cut(s)	36, 1107, 1510
MaeI	CTAG	5 cut(s)	69, 78, 144, 617, 1395
MaeII	ACGT	5 cut(s)	231, 324, 1067, 1220, 1647
MaeIII	GTNAC	5 cut(s)	395, 777, 851, 1063, 1299
MalI	GATC	6 cut(s)	73, 404, 546, 919, 1242, 1694
MboI	GATC	6 cut(s)	71, 402, 544, 917, 1240, 1692
MboII	GAAGA	6 cut(s)	290, 611, 659, 700, 1054, 1250
MfeI	CAATTG	1 cut(s)	748
MflI	RGATCY	3 cut(s)	544, 1240, 1692
MhlI	GDGCHC	4 cut(s)	330, 1002, 1203, 1683
MluCI	AATT	8 cut(s)	224, 388, 477, 748, 817, 961, 1180, 1452
MlyI	GAGTC	5 cut(s)	509, 542, 685, 832, 1132
MmeI	TCCRAC	1 cut(s)	895
MroXI	GAANNNNTTC	1 cut(s)	493
MseI	TTAA	7 cut(s)	552, 741, 816, 831, 978, 1274, 1608
MspA1I	CMGCKG	1 cut(s)	13
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	5 cut(s)	43, 1307, 1337, 1721, 1744
MspR9I	CCNGG	5 cut(s)	1103, 1109, 1279, 1308, 1745
MunI	CAATTG	1 cut(s)	748
Mva1269I	GAATGC	1 cut(s)	1282
MvaI	CCWGG	3 cut(s)	1103, 1109, 1279
NciI	CCSGG	2 cut(s)	1308, 1745
NdeII	GATC	6 cut(s)	71, 402, 544, 917, 1240, 1692
NlaIII	CATG	6 cut(s)	662, 683, 1094, 1428, 1462, 1763
NlaIV	GGNNCC	8 cut(s)	57, 90, 213, 993, 1200, 1479, 1725, 1748
NmeAIII	GCCGAG	1 cut(s)	371
NmuCI	GTSAC	2 cut(s)	777, 1299
NsbI	TGCGCA	1 cut(s)	910
NspI	RCATGY	2 cut(s)	1094, 1428
PaeR7I	CTCGAG	1 cut(s)	60
PagI	TCATGA	1 cut(s)	658
PceI	AGGCCT	2 cut(s)	655, 1534
PciI	ACATGT	1 cut(s)	1090
PctI	GAATGC	1 cut(s)	1282
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	7 cut(s)	121, 197, 428, 438, 606, 1330, 1524
PflFI	GACNNNGTC	1 cut(s)	1745
PkrI	GCNGC	6 cut(s)	12, 908, 1358, 1704, 1791, 1804
PleI	GAGTC	5 cut(s)	509, 541, 685, 831, 1132
PpsI	GAGTC	5 cut(s)	509, 541, 685, 831, 1132
Ppu21I	YACGTR	3 cut(s)	325, 1221, 1648
PpuMI	RGGWCCY	4 cut(s)	89, 211, 991, 1747
PscI	ACATGT	1 cut(s)	1090
Psp124BI	GAGCTC	1 cut(s)	1002
Psp5II	RGGWCCY	4 cut(s)	89, 211, 991, 1747
Psp6I	CCWGG	3 cut(s)	1101, 1107, 1277
PspGI	CCWGG	3 cut(s)	1101, 1107, 1277
PspN4I	GGNNCC	8 cut(s)	57, 90, 213, 993, 1200, 1479, 1725, 1748
PspPI	GGNCC	6 cut(s)	89, 211, 991, 1105, 1741, 1747
PspPPI	RGGWCCY	4 cut(s)	89, 211, 991, 1747
PspXI	VCTCGAGB	1 cut(s)	60
PsuI	RGATCY	3 cut(s)	544, 1240, 1692
PsyI	GACNNNGTC	1 cut(s)	1745
RsaI	GTAC	4 cut(s)	1223, 1341, 1399, 1515
RsaNI	GTAC	4 cut(s)	1222, 1340, 1398, 1514
SacI	GAGCTC	1 cut(s)	1002
SaqAI	TTAA	7 cut(s)	552, 741, 816, 831, 978, 1274, 1608
SatI	GCNGC	6 cut(s)	11, 907, 1357, 1703, 1790, 1803
Sau3AI	GATC	6 cut(s)	71, 402, 544, 917, 1240, 1692
Sau96I	GGNCC	6 cut(s)	89, 211, 991, 1105, 1741, 1747
ScaI	AGTACT	1 cut(s)	1399
SchI	GAGTC	5 cut(s)	509, 542, 685, 832, 1132
ScrFI	CCNGG	5 cut(s)	1103, 1109, 1279, 1308, 1745
SduI	GDGCHC	4 cut(s)	330, 1002, 1203, 1683
SfaNI	GCATC	3 cut(s)	36, 1107, 1510
Sfr274I	CTCGAG	1 cut(s)	60
SinI	GGWCC	6 cut(s)	89, 211, 991, 1105, 1741, 1747
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	3 cut(s)	60, 107, 551
SmoI	CTYRAG	3 cut(s)	60, 107, 551
SnaBI	TACGTA	1 cut(s)	1221
Sse9I	AATT	8 cut(s)	224, 388, 477, 748, 817, 961, 1180, 1452
SseBI	AGGCCT	2 cut(s)	655, 1534
SsiI	CCGC	8 cut(s)	13, 215, 745, 1023, 1418, 1700, 1802, 1805
SspMI	CTAG	5 cut(s)	69, 78, 144, 617, 1395
SstI	GAGCTC	1 cut(s)	1002
StuI	AGGCCT	2 cut(s)	655, 1534
StyD4I	CCNGG	5 cut(s)	1101, 1107, 1277, 1306, 1743
TaaI	ACNGT	3 cut(s)	857, 1030, 1051
TaiI	ACGT	5 cut(s)	234, 327, 1070, 1223, 1650
TaqI	TCGA	7 cut(s)	61, 441, 609, 1286, 1325, 1403, 1639
TasI	AATT	8 cut(s)	224, 388, 477, 748, 817, 961, 1180, 1452
TatI	WGTACW	2 cut(s)	1397, 1513
TauI	GCSGC	1 cut(s)	1805
TfiI	GAWTC	7 cut(s)	121, 197, 428, 438, 606, 1330, 1524
Tru1I	TTAA	7 cut(s)	552, 741, 816, 831, 978, 1274, 1608
Tru9I	TTAA	7 cut(s)	552, 741, 816, 831, 978, 1274, 1608
TscAI	CASTG	1 cut(s)	1680
TseFI	GTSAC	2 cut(s)	777, 1299
TseI	GCWGC	5 cut(s)	10, 906, 1356, 1702, 1789
Tsp45I	GTSAC	2 cut(s)	777, 1299
TspDTI	ATGAA	3 cut(s)	1026, 1343, 1475
TspRI	CASTG	1 cut(s)	1680
Tth111I	GACNNNGTC	1 cut(s)	1745
Vha464I	CTTAAG	1 cut(s)	551
VneI	GTGCAC	2 cut(s)	326, 1679
VpaK11BI	GGWCC	6 cut(s)	89, 211, 991, 1105, 1741, 1747
XagI	CCTNNNNNAGG	1 cut(s)	1106
XapI	RAATTY	3 cut(s)	224, 388, 477
XbaI	TCTAGA	1 cut(s)	68
XceI	RCATGY	2 cut(s)	1094, 1428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1493
XhoI	CTCGAG	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	493
XspI	CTAG	5 cut(s)	69, 78, 144, 617, 1395
ZrmI	AGTACT	1 cut(s)	1399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.