Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009697

Physical Location & Seq

Genomic Coordinates Reverse (-)

6365216 .. 6366556

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0081600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGATGATTATTCAGAGTCAGAGGATTGGTGCTTCATCTGCAAAGACGGTGGGGTTCTAATTCTATGCGACCACGAGGGCTGCTCCAAAGCCTATCACCCTCGCTGCGTTGGAAAGAAGATATCTTTCCTCAAGAAACAAAAGCGCTGGATTTGTAGTCACCACTCCTGCTCAGCGTGCGGTGTTGCCGCCCCTGGAACTAAGATCCTCTCTTGCCTTCTTTGCACTTTTGCAGTGTGTGGTAGTTGCTGCAAAAGCAGCGATGCTAATTCGGAGTTTGCAGTGGTGAGAGGGAAGGAGAAACTTGGCCTTTGCAATGACTGCTTAGGGATTGTTAGGCTTGCAGAAGAAAATGGACAGTATGGAGTAGATGGAAAGAAATTAGGCTTCGAGGATCCGGAAACATTTGAATACGGATTCAAAGAATGTTGGGAAATCATCAAGGAAAAGGAGGGCTTGACCTTGGATGATCTCTACTTCCCATATTCCAAAGGGGTAACAGATAGTCATGACAGTAAAGACACAGAAACTCACAAGTCAACATTGGGCAAACGGAAGGCAGAAGCCGAAATTTGTGAGGATAACGAAGATGAATTTGGTAGTGACGATCTTGCTGCAAGCAACCACAAGAAGCAAAAATTAGTGAGCTCATCAGAGCATATGACATCAGAATCTGATTTGCATGAGGAAAATAACTCCGAGGAAAAGGAGGAAATGATTCCTAGTCCGACTAGGAATGACGAATCAGAGTGGCGCTTTGCATCTATAGTTGCTAGTAATATGAAGCTTGTCTACTTGAGAAGGAGCTTAGTGGAGGAGCTGATATCCAAGCAGCCTGATAGTTGGGAAAGAAAACTAGTTGGAAGTTATGTGAGAGTGGAAAATGAACCCGAGGACTATTTTCAGATAAAATCTTCTTACCAACTTTCACAAGTGAAAGGCATAATTAGGAACCACAACAATGGAGAAGAAATTCTCCTGCATCTGCTAACAAGAGAGGTTCCAATTTCTATGCTATCGGATTGTGACTTCACTGAGGAAGATTGTGAAGATTTGCAAGAAAGGGTGAAAATTGACCTGATGAGGAGACCGACGGTTGTTGAAATTGAACAAAAAGCAAGAGAGCTGCATGAAGATATAACTAAGGATTGGATTGAGAGAGAGTTGGTCCGGTTACAGAAATGCATTCATCACGAGAAAAATCAGCATGGATGGATCAGCAGAGAGTTATGTGAGTATTTGAAACAAAGAAATATGCTAAAGCAACCATCTGAGCAGGAAAGACTCCGAAAAGAGGTGCCACAAGTCATTGCAGAGGACTTGGACTCCAGCAATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

446

Amino Acids

51.25

Weight (kDa)

5.1

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_NSD	PF22908	10 - 55	3.2e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Plus-3	PF03126	260 - 356	6.7e-11	Plus-3 domain
NERD_plant	PF25980	378 - 429	2.7e-11	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13540 FvH4_6g13540
malus_domestica	MD04G1130300.v1.1 MD12G1143400.v1.1
prunus_persica	Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1
pyrus_communis	pycom12g13810
rosa_chinensis	RchiOBHm_Chr3g0466401
rosa_laevigata	RLG00000024577
rosa_multiflora	Rmu_sc0001716.1_g000002 Rmu_sc0003332.1_g000029 Rmu_sc0003480.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414500
rosa_rugosa	Rorug03G0081500 Rorug03G0081600 Rorug03G0081700
rosa_samantha	Rh3AG128100 Rh3BG149400 Rh3DG150100
rosa_wichuraiana	Rw3G012100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1297
AccI	GTMKAC	1 cut(s)	792
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	2 cut(s)	180, 189
AclWI	GGATC	4 cut(s)	199, 389, 402, 1223
AcsI	RAATTY	3 cut(s)	570, 593, 972
AfeI	AGCGCT	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	1294
AgsI	TTSAA	5 cut(s)	410, 421, 1103, 1109, 1243
AhlI	ACTAGT	1 cut(s)	856
AjnI	CCWGG	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	579, 611
AluBI	AGCT	5 cut(s)	648, 787, 807, 820, 1126
AluI	AGCT	5 cut(s)	648, 787, 807, 820, 1126
Alw21I	GWGCWC	1 cut(s)	650
Alw26I	GTCTC	1 cut(s)	1081
AlwI	GGATC	4 cut(s)	199, 389, 402, 1223
AlwNI	CAGNNNCTG	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	890
Aor13HI	TCCGGA	1 cut(s)	397
Aor51HI	AGCGCT	1 cut(s)	146
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	7 cut(s)	81, 105, 249, 258, 614, 832, 1126
ApoI	RAATTY	3 cut(s)	570, 593, 972
Asp700I	GAANNNNTTC	2 cut(s)	717, 972
AspLEI	GCGC	2 cut(s)	147, 756
AspS9I	GGNCC	1 cut(s)	1168
AsuHPI	GGTGA	4 cut(s)	89, 152, 298, 1078
AvaI	CYCGRG	1 cut(s)	890
AvaII	GGWCC	1 cut(s)	1168
BamHI	GGATCC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	1297
BanII	GRGCYC	1 cut(s)	650
BarI	GAAGNNNNNNTAC	2 cut(s)	776, 808
BauI	CACGAG	2 cut(s)	74, 1193
Bbv12I	GWGCWC	1 cut(s)	650
BbvI	GCAGC	7 cut(s)	68, 92, 236, 270, 601, 844, 1113
BccI	CCATC	3 cut(s)	365, 1206, 1276
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	1081
BcuI	ACTAGT	1 cut(s)	856
BfaI	CTAG	4 cut(s)	723, 732, 774, 857
BfmI	CTRYAG	1 cut(s)	765
BfoI	RGCGCY	2 cut(s)	148, 757
BisI	GCNGC	8 cut(s)	82, 106, 189, 250, 259, 615, 833, 1127
BlpI	GCTNAGC	1 cut(s)	172
BlsI	GCNGC	8 cut(s)	83, 107, 190, 251, 260, 616, 834, 1128
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	1168
BmeT110I	CYCGRG	1 cut(s)	890
BmgT120I	GGNCC	1 cut(s)	1168
BmiI	GGNNCC	4 cut(s)	396, 953, 1002, 1299
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	3 cut(s)	253, 770, 991
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	1312
Bpu10I	CCTNAGC	1 cut(s)	325
Bpu1102I	GCTNAGC	1 cut(s)	172
BpuEI	CTTGAG	2 cut(s)	116, 817
BsaI	GGTCTC	1 cut(s)	1081
BsaJI	CCNNGG	4 cut(s)	193, 462, 699, 891
BsaWI	WCCGGW	2 cut(s)	397, 1170
BsaXI	ACNNNNNCTCC	2 cut(s)	1310, 1340
Bsc4I	CCNNNNNNNGG	1 cut(s)	1294
Bse3DI	GCAATG	2 cut(s)	322, 1308
BseAI	TCCGGA	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	4 cut(s)	193, 462, 699, 891
BseGI	GGATG	3 cut(s)	10, 472, 1217
BseLI	CCNNNNNNNGG	1 cut(s)	1294
BseMI	GCAATG	2 cut(s)	322, 1308
BseMII	CTCAG	3 cut(s)	186, 1026, 1263
BseRI	GAGGAG	2 cut(s)	830, 1099
BseXI	GCAGC	7 cut(s)	68, 92, 236, 270, 601, 844, 1113
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	1297
BsiHKAI	GWGCWC	1 cut(s)	650
BsiHKCI	CYCGRG	1 cut(s)	890
BsiSI	CCGG	2 cut(s)	398, 1171
BslI	CCNNNNNNNGG	1 cut(s)	1294
BsmAI	GTCTC	1 cut(s)	1081
BsmI	GAATGC	1 cut(s)	1185
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	1081
BsoBI	CYCGRG	1 cut(s)	890
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp13I	TCCGGA	1 cut(s)	397
Bsp143I	GATC	5 cut(s)	204, 394, 469, 607, 1215
Bsp1720I	GCTNAGC	1 cut(s)	172
BspACI	CCGC	2 cut(s)	180, 189
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	3 cut(s)	185, 1027, 1264
BspEI	TCCGGA	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	396, 953, 1002, 1299
BspPI	GGATC	4 cut(s)	199, 389, 402, 1223
BspT107I	GGYRCC	1 cut(s)	1297
BspTNI	GGTCTC	1 cut(s)	1081
BsrDI	GCAATG	2 cut(s)	322, 1308
BssECI	CCNNGG	4 cut(s)	193, 462, 699, 891
BssMI	GATC	5 cut(s)	204, 394, 469, 607, 1215
BssSI	CACGAG	2 cut(s)	74, 1193
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	2 cut(s)	74, 1193
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	4 cut(s)	50, 360, 515, 1096
BstAPI	GCANNNNNTGC	1 cut(s)	321
BstC8I	GCNNGC	3 cut(s)	178, 342, 619
BstDEI	CTNAG	7 cut(s)	172, 201, 325, 808, 1035, 1143, 1272
BstF5I	GGATG	3 cut(s)	10, 472, 1217
BstH2I	RGCGCY	2 cut(s)	148, 757
BstHHI	GCGC	2 cut(s)	147, 756
BstKTI	GATC	5 cut(s)	207, 397, 472, 610, 1218
BstMAI	GTCTC	1 cut(s)	1081
BstMBI	GATC	5 cut(s)	204, 394, 469, 607, 1215
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 177, 222, 255, 258, 321
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	765
BstV1I	GCAGC	7 cut(s)	68, 92, 236, 270, 601, 844, 1113
BstX2I	RGATCY	2 cut(s)	204, 394
BstXI	CCANNNNNNTGG	1 cut(s)	962
BstYI	RGATCY	2 cut(s)	204, 394
BsuRI	GGCC	1 cut(s)	309
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	3 cut(s)	10, 472, 1217
BtsI	GCAGTG	2 cut(s)	240, 288
BtsIMutI	CAGTG	3 cut(s)	240, 288, 1032
Cac8I	GCNNGC	3 cut(s)	178, 342, 619
CaiI	CAGNNNCTG	1 cut(s)	674
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	2 cut(s)	147, 756
Cfr13I	GGNCC	1 cut(s)	1168
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	4 cut(s)	509, 683, 1130, 1208
DdeI	CTNAG	7 cut(s)	172, 201, 325, 808, 1035, 1143, 1272
DpnI	GATC	5 cut(s)	206, 396, 471, 609, 1217
DpnII	GATC	5 cut(s)	204, 394, 469, 607, 1215
Ecl136II	GAGCTC	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	650
Eco31I	GGTCTC	1 cut(s)	1081
Eco32I	GATATC	2 cut(s)	123, 825
Eco47I	GGWCC	1 cut(s)	1168
Eco47III	AGCGCT	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	890
EcoICRI	GAGCTC	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	193
EcoRV	GATATC	2 cut(s)	123, 825
EcoT14I	CCWWGG	1 cut(s)	462
EcoT22I	ATGCAT	1 cut(s)	1187
EcoT38I	GRGCYC	1 cut(s)	650
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	4 cut(s)	512, 686, 1133, 1211
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FatI	CATG	4 cut(s)	508, 682, 1129, 1207
FauNDI	CATATG	1 cut(s)	660
FblI	GTMKAC	1 cut(s)	792
Fnu4HI	GCNGC	8 cut(s)	82, 106, 189, 250, 259, 615, 833, 1127
FokI	GGATG	3 cut(s)	17, 479, 1224
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	8 cut(s)	82, 106, 189, 250, 259, 615, 833, 1127
FspBI	CTAG	4 cut(s)	723, 732, 774, 857
GlaI	GCGC	2 cut(s)	146, 755
GluI	GCNGC	8 cut(s)	82, 106, 189, 250, 259, 615, 833, 1127
GsuI	CTGGAG	1 cut(s)	1312
HaeII	RGCGCY	2 cut(s)	148, 757
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	2 cut(s)	398, 1171
HhaI	GCGC	2 cut(s)	147, 756
Hin1II	CATG	4 cut(s)	512, 686, 1133, 1211
Hin6I	GCGC	2 cut(s)	145, 754
HinP1I	GCGC	2 cut(s)	145, 754
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	7 cut(s)	17, 417, 671, 718, 743, 1284, 1325
HpaII	CCGG	2 cut(s)	398, 1171
HphI	GGTGA	4 cut(s)	89, 152, 298, 1078
Hpy166II	GTNNAC	2 cut(s)	540, 793
Hpy188III	TCNNGA	4 cut(s)	133, 398, 509, 1193
Hpy8I	GTNNAC	2 cut(s)	540, 793
Hpy99I	CGWCG	1 cut(s)	1096
HpyAV	CCTTC	4 cut(s)	227, 289, 550, 795
HpyCH4III	ACNGT	4 cut(s)	50, 360, 515, 1096
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 177, 222, 255, 258, 321
HpyF3I	CTNAG	7 cut(s)	172, 201, 325, 808, 1035, 1143, 1272
Hsp92II	CATG	4 cut(s)	512, 686, 1133, 1211
HspAI	GCGC	2 cut(s)	145, 754
Kpn2I	TCCGGA	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	204, 394, 469, 607, 1215
LmnI	GCTCC	3 cut(s)	89, 804, 817
Lsp1109I	GCAGC	7 cut(s)	68, 92, 236, 270, 601, 844, 1113
LweI	GCATC	3 cut(s)	253, 770, 991
MaeI	CTAG	4 cut(s)	723, 732, 774, 857
MaeIII	GTNAC	5 cut(s)	158, 496, 602, 1025, 1173
MalI	GATC	5 cut(s)	206, 396, 471, 609, 1217
MboI	GATC	5 cut(s)	204, 394, 469, 607, 1215
MboII	GAAGA	8 cut(s)	130, 359, 599, 906, 980, 1052, 1061, 1145
MflI	RGATCY	2 cut(s)	204, 394
MhlI	GDGCHC	1 cut(s)	650
MlyI	GAGTC	3 cut(s)	26, 1278, 1319
MmeI	TCCRAC	3 cut(s)	91, 752, 841
Mph1103I	ATGCAT	1 cut(s)	1187
MroI	TCCGGA	1 cut(s)	397
MroXI	GAANNNNTTC	2 cut(s)	717, 972
MslI	CAYNNNNRTG	1 cut(s)	960
MspI	CCGG	2 cut(s)	398, 1171
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	1185
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	6 cut(s)	39, 177, 222, 255, 258, 321
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	5 cut(s)	204, 394, 469, 607, 1215
NlaIII	CATG	4 cut(s)	512, 686, 1133, 1211
NlaIV	GGNNCC	4 cut(s)	396, 953, 1002, 1299
NmuCI	GTSAC	3 cut(s)	158, 602, 1025
NsiI	ATGCAT	1 cut(s)	1187
PagI	TCATGA	1 cut(s)	508
PctI	GAATGC	1 cut(s)	1185
PdmI	GAANNNNTTC	2 cut(s)	717, 972
PfeI	GAWTC	4 cut(s)	417, 671, 718, 743
PkrI	GCNGC	8 cut(s)	83, 107, 190, 251, 260, 616, 834, 1128
PleI	GAGTC	3 cut(s)	25, 1278, 1319
PpsI	GAGTC	3 cut(s)	25, 1278, 1319
Psp124BI	GAGCTC	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	4 cut(s)	396, 953, 1002, 1299
PspPI	GGNCC	1 cut(s)	1168
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	2 cut(s)	204, 394
RseI	CAYNNNNRTG	1 cut(s)	960
SacI	GAGCTC	1 cut(s)	650
SatI	GCNGC	8 cut(s)	82, 106, 189, 250, 259, 615, 833, 1127
Sau3AI	GATC	5 cut(s)	204, 394, 469, 607, 1215
Sau96I	GGNCC	1 cut(s)	1168
SchI	GAGTC	3 cut(s)	26, 1278, 1319
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	650
SetI	ASST	9 cut(s)	464, 650, 789, 809, 822, 1002, 1080, 1128, 1299
SfaNI	GCATC	3 cut(s)	253, 770, 991
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	1168
SmiMI	CAYNNNNRTG	1 cut(s)	960
SmlI	CTYRAG	2 cut(s)	131, 796
SmoI	CTYRAG	2 cut(s)	131, 796
SpeI	ACTAGT	1 cut(s)	856
SsiI	CCGC	2 cut(s)	180, 189
SspMI	CTAG	4 cut(s)	723, 732, 774, 857
SstI	GAGCTC	1 cut(s)	650
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	4 cut(s)	50, 360, 515, 1096
TaqI	TCGA	1 cut(s)	390
TaqII	GACCGA	1 cut(s)	1105
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	4 cut(s)	417, 671, 718, 743
TscAI	CASTG	3 cut(s)	240, 288, 1039
TseFI	GTSAC	3 cut(s)	158, 602, 1025
TseI	GCWGC	7 cut(s)	81, 105, 249, 258, 614, 832, 1126
Tsp45I	GTSAC	3 cut(s)	158, 602, 1025
TspDTI	ATGAA	6 cut(s)	25, 606, 797, 900, 1146, 1178
TspGWI	ACGGA	2 cut(s)	429, 568
TspRI	CASTG	3 cut(s)	240, 288, 1039
VpaK11BI	GGWCC	1 cut(s)	1168
XapI	RAATTY	3 cut(s)	570, 593, 972
XmiI	GTMKAC	1 cut(s)	792
XmnI	GAANNNNTTC	2 cut(s)	717, 972
XspI	CTAG	4 cut(s)	723, 732, 774, 857
Zsp2I	ATGCAT	1 cut(s)	1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.