Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009697

Physical Location & Seq

Genomic Coordinates Forward (+)

6374135 .. 6375813

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0081700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCCTTTTCACCTGCAAGACATTGGTGATTTGAGGTTGTATTCAAATTCTTTGACCTACCATCTTCCTAAATCAGGGCGCTTCCCGAGTCTCAAGTATGTTACATTAATTACTAATTTAACCGAATGTGGAATGTTAGATAACCTTTTTTCTCAGTGCCCGATACTTGAGCATTTGATTATAGATTTACAACATTGTCGTGGTCCTAAAGATCTTAGCATTTCTGCGCCTGAGCTGAAGAGTTTAAAAATAAGTTTGTCAGGGGAGACACTTTCACATTATTATTTGGACAATCCAAAATCCTTAGTCAAAGCCGATATTCATCTGAAAGGCCTTGAATCTGAAATACGTTCCTATAAATCCCAAAAACGTGCCTTTGTCGACCAAGCATATGTGCTTCTGGCAGAAATTTCTGGTGTTCAACATCTGTCTCTTTCAGCTTCTTGTTTGGAGGGTTGTGATCTACCTGCTTTTGGTAATTTGAAGAAGTTGAAGCTATATGACTGGGAGTTGCTAGCAGTATTTCTCAAGGTGTCGCCTAATTTGGAAGATCTTGTCTTAGAAGTTGGAACCAAATCAGATGAAGAGTGTATAGAGCATCAATGGAATATTCCAGATTCTGTGCCTGTTTGTCTCTCGTCACACCTGAAGACTATCTCCATAATGGAATTTAAGGGACGGGAAATCGAGATGGAAGCGGCACAGTATCTGCTAAAGAATGGTCGAGCTTTGAAGAAAATGACAATTTATACAGGAAAAGACCTTCCGTACATCGAAGAGAATAAACTTGTCAAGTGGAATTTATCAAGATGCGATTTGGAGGTCTTGGCAGGTTCTGTTTTGGATGTTGTAATAGCATCTTTGTTGATGGAAGATGAATCTAGCTGTGTTAAGCTCCTTTACGAAGGCATTTATTTGAAATTTTCAAGAGACATACTGTGCCCAAATAAATTTCGACTCAGGCCTATTAGAAGAGCATCATCCATCAATTACCAATTGGACACCATTTTCGGGATTCTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

341

Amino Acids

38.67

Weight (kDa)

6.17

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	20 - 87	5.1e-06	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	29 - 255	1.5e-06	At1g61320/AtMIF1, LRR domain
FBD	PF08387	205 - 249	7.1e-17	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13540 FvH4_6g13540
malus_domestica	MD04G1130300.v1.1 MD12G1143400.v1.1
prunus_persica	Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1
pyrus_communis	pycom12g13810
rosa_chinensis	RchiOBHm_Chr3g0466401
rosa_laevigata	RLG00000024577
rosa_multiflora	Rmu_sc0001716.1_g000002 Rmu_sc0003332.1_g000029 Rmu_sc0003480.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414500
rosa_rugosa	Rorug03G0081500 Rorug03G0081600 Rorug03G0081700
rosa_samantha	Rh3AG128100 Rh3BG149400 Rh3DG150100
rosa_wichuraiana	Rw3G012100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1024
AarI	CACCTGC	1 cut(s)	21
Acc36I	ACCTGC	3 cut(s)	21, 475, 821
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	1 cut(s)	698
AcsI	RAATTY	6 cut(s)	46, 408, 668, 799, 920, 950
AcuI	CTGAAG	2 cut(s)	257, 668
AfaI	GTAC	1 cut(s)	770
AfiI	CCNNNNNNNGG	3 cut(s)	74, 473, 1011
AgsI	TTSAA	8 cut(s)	45, 338, 422, 484, 493, 733, 919, 927
AluBI	AGCT	6 cut(s)	235, 440, 496, 728, 885, 895
AluI	AGCT	6 cut(s)	235, 440, 496, 728, 885, 895
Alw26I	GTCTC	5 cut(s)	95, 260, 435, 638, 924
AlwNI	CAGNNNCTG	3 cut(s)	620, 709, 836
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	331, 962
ApoI	RAATTY	6 cut(s)	46, 408, 668, 799, 920, 950
ArsI	GACNNNNNNTTYG	2 cut(s)	992, 1024
AseI	ATTAAT	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	81, 229
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	38
AsuNHI	GCTAGC	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	2 cut(s)	161, 944
BbsI	GAAGAC	1 cut(s)	656
BccI	CCATC	4 cut(s)	69, 685, 862, 992
BcoDI	GTCTC	5 cut(s)	95, 260, 435, 638, 924
BfaI	CTAG	2 cut(s)	515, 882
BfoI	RGCGCY	1 cut(s)	82
BfuAI	ACCTGC	3 cut(s)	21, 475, 821
BglII	AGATCT	2 cut(s)	211, 550
BisI	GCNGC	1 cut(s)	699
BlsI	GCNGC	1 cut(s)	700
Bme18I	GGWCC	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	571
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	4 cut(s)	607, 800, 866, 986
BmtI	GCTAGC	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	656
Bpu10I	CCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	3 cut(s)	77, 188, 512
BsaBI	GATNNNNATC	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 473, 1011
Bse1I	ACTGG	1 cut(s)	509
Bse8I	GATNNNNATC	1 cut(s)	321
BseGI	GGATG	2 cut(s)	850, 980
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	3 cut(s)	74, 473, 1011
BseMII	CTCAG	3 cut(s)	167, 222, 973
BseNI	ACTGG	1 cut(s)	509
BseSI	GKGCMC	2 cut(s)	161, 944
BshFI	GGCC	2 cut(s)	333, 964
BsiHKCI	CYCGRG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	690
BslI	CCNNNNNNNGG	3 cut(s)	74, 473, 1011
BsmAI	GTCTC	5 cut(s)	95, 260, 435, 638, 924
BsmFI	GGGAC	1 cut(s)	690
BsnI	GGCC	2 cut(s)	333, 964
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	161, 944
Bsp143I	GATC	3 cut(s)	211, 460, 550
BspACI	CCGC	1 cut(s)	698
BspANI	GGCC	2 cut(s)	333, 964
BspCNI	CTCAG	3 cut(s)	166, 223, 972
BspLI	GGNNCC	1 cut(s)	571
BspMI	ACCTGC	3 cut(s)	21, 475, 821
BspOI	GCTAGC	1 cut(s)	518
BspQI	GCTCTTC	1 cut(s)	967
BsrI	ACTGG	1 cut(s)	509
BssMI	GATC	3 cut(s)	211, 460, 550
Bst4CI	ACNGT	2 cut(s)	705, 939
Bst6I	CTCTTC	4 cut(s)	233, 579, 771, 967
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	6 cut(s)	153, 215, 231, 304, 559, 959
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	850, 980
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	81, 229
BstKTI	GATC	3 cut(s)	214, 463, 553
BstMAI	GTCTC	5 cut(s)	95, 260, 435, 638, 924
BstMBI	GATC	3 cut(s)	211, 460, 550
BstSLI	GKGCMC	2 cut(s)	161, 944
BstV2I	GAAGAC	1 cut(s)	656
BstX2I	RGATCY	2 cut(s)	211, 550
BstYI	RGATCY	2 cut(s)	211, 550
BsuRI	GGCC	2 cut(s)	333, 964
BtsCI	GGATG	2 cut(s)	850, 980
BtsIMutI	CAGTG	1 cut(s)	161
BveI	ACCTGC	3 cut(s)	21, 475, 821
Cac8I	GCNNGC	1 cut(s)	516
CaiI	CAGNNNCTG	3 cut(s)	620, 709, 836
CfoI	GCGC	2 cut(s)	81, 229
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	769
CviJI	RGCY	9 cut(s)	235, 314, 333, 440, 496, 728, 885, 895, 964
CviKI_1	RGCY	9 cut(s)	235, 314, 333, 440, 496, 728, 885, 895, 964
CviQI	GTAC	1 cut(s)	769
DdeI	CTNAG	6 cut(s)	153, 215, 231, 304, 559, 959
DpnI	GATC	3 cut(s)	213, 462, 552
DpnII	GATC	3 cut(s)	211, 460, 550
DraI	TTTAAA	1 cut(s)	246
Eam1104I	CTCTTC	4 cut(s)	233, 579, 771, 967
EarI	CTCTTC	4 cut(s)	233, 579, 771, 967
Eco147I	AGGCCT	2 cut(s)	333, 964
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	2 cut(s)	257, 668
Eco88I	CYCGRG	1 cut(s)	85
EcoNI	CCTNNNNNAGG	1 cut(s)	72
FaqI	GGGAC	1 cut(s)	690
FauNDI	CATATG	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	699
FokI	GGATG	2 cut(s)	857, 967
Fsp4HI	GCNGC	1 cut(s)	699
FspBI	CTAG	2 cut(s)	515, 882
GlaI	GCGC	2 cut(s)	80, 228
GluI	GCNGC	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	333, 964
HhaI	GCGC	2 cut(s)	81, 229
Hin6I	GCGC	2 cut(s)	79, 227
HinP1I	GCGC	2 cut(s)	79, 227
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	6 cut(s)	88, 338, 617, 878, 957, 1015
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	327, 343, 580
Hpy188III	TCNNGA	6 cut(s)	85, 614, 688, 807, 927, 1012
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	773, 899
HpyCH4III	ACNGT	2 cut(s)	705, 939
HpyCH4IV	ACGT	2 cut(s)	349, 370
HpyCH4V	TGCA	1 cut(s)	16
HpyF3I	CTNAG	6 cut(s)	153, 215, 231, 304, 559, 959
HpySE526I	ACGT	2 cut(s)	349, 370
HspAI	GCGC	2 cut(s)	79, 227
Kzo9I	GATC	3 cut(s)	211, 460, 550
LguI	GCTCTTC	1 cut(s)	967
LmnI	GCTCC	1 cut(s)	900
LweI	GCATC	4 cut(s)	607, 800, 866, 986
MaeI	CTAG	2 cut(s)	515, 882
MaeII	ACGT	2 cut(s)	349, 370
MaeIII	GTNAC	2 cut(s)	100, 639
MalI	GATC	3 cut(s)	213, 462, 552
MboI	GATC	3 cut(s)	211, 460, 550
MfeI	CAATTG	1 cut(s)	995
MflI	RGATCY	2 cut(s)	211, 550
MhlI	GDGCHC	2 cut(s)	161, 944
MlyI	GAGTC	2 cut(s)	97, 951
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	3 cut(s)	27, 445, 814
MseI	TTAA	5 cut(s)	107, 119, 245, 672, 891
MslI	CAYNNNNRTG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	995
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	3 cut(s)	211, 460, 550
NheI	GCTAGC	1 cut(s)	514
NlaIV	GGNNCC	1 cut(s)	571
NmuCI	GTSAC	1 cut(s)	639
PaqCI	CACCTGC	1 cut(s)	21
PceI	AGGCCT	2 cut(s)	333, 964
PciSI	GCTCTTC	1 cut(s)	967
PfeI	GAWTC	4 cut(s)	338, 617, 878, 1015
PkrI	GCNGC	1 cut(s)	700
PleI	GAGTC	2 cut(s)	96, 951
PpsI	GAGTC	2 cut(s)	96, 951
PshBI	ATTAAT	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	1024
PspN4I	GGNNCC	1 cut(s)	571
PspPI	GGNCC	1 cut(s)	203
PstNI	CAGNNNCTG	3 cut(s)	620, 709, 836
PsuI	RGATCY	2 cut(s)	211, 550
RsaI	GTAC	1 cut(s)	770
RsaNI	GTAC	1 cut(s)	769
RseI	CAYNNNNRTG	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	967
SaqAI	TTAA	5 cut(s)	107, 119, 245, 672, 891
SatI	GCNGC	1 cut(s)	699
Sau3AI	GATC	3 cut(s)	211, 460, 550
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	2 cut(s)	97, 951
SduI	GDGCHC	2 cut(s)	161, 944
SfaNI	GCATC	4 cut(s)	607, 800, 866, 986
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	3 cut(s)	92, 167, 527
SmoI	CTYRAG	3 cut(s)	92, 167, 527
SseBI	AGGCCT	2 cut(s)	333, 964
SsiI	CCGC	1 cut(s)	698
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	2 cut(s)	515, 882
StuI	AGGCCT	2 cut(s)	333, 964
TaaI	ACNGT	2 cut(s)	705, 939
TaiI	ACGT	2 cut(s)	352, 373
TaqI	TCGA	5 cut(s)	381, 687, 724, 774, 955
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	4 cut(s)	338, 617, 878, 1015
Tru1I	TTAA	5 cut(s)	107, 119, 245, 672, 891
Tru9I	TTAA	5 cut(s)	107, 119, 245, 672, 891
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	639
Tsp45I	GTSAC	1 cut(s)	639
TspDTI	ATGAA	3 cut(s)	311, 597, 891
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	203
VspI	ATTAAT	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	72
XapI	RAATTY	6 cut(s)	46, 408, 668, 799, 920, 950
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	2 cut(s)	515, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.