Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009697

Physical Location & Seq

Genomic Coordinates Reverse (-)

11043498 .. 11049300

Gene Structure 5803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG128100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTTCTTTATGATATATAATAGCTTTGATGTTGAATTAATGCCTTTAGATGGGAAAATAAAGCAAGTTTACCGTAATGGGAGACCTTGTTACGCACATCAAAGATCACAGAAGATTTATCCTTTTAAGAAGAGAAATTTCTTTAACCGGAGGCCATTTACTACGTCTGATAGAGGCTGTAACTGTGAAAACATATGCAGTTCACCTGACAAGAGAGAAGATGGTGGCAACTGCAACGCAGCAATTGGACGGTCATCCTCAACAACAGGTCGAGAACCTTCCAAGTCCAATGATCGTAATGTGAGGCTGAGTATTAAATCCTTCAAAGTTCCCGAACTTTTCTTTGAAATTCCTACAACTGCAACTGTTGGTTCATTGAAGAGGACAGTAATGGAGGCTGTAACTTCTATACTTGGAGAGGGATTACATGTTGGGATCCTAGTTCAGGGAAAGAAGGTCAGAGATGACAGCAAAACATTACTTCAGACTGGGATTTCGCATGATGACAAGCTTGACAATTTGGGTTTTACCTTGGAGCCCAAACATTCCAAGCTTATATATTCTCAATGCGGCAATGATCCTTCCTCTGTTTCTGGCAGAACTCAAGAGTTAACCAGGCATTCTGCATCTTTGGTCTCACGACCAGGGACTTCAAATGTCTCCCTGAATCCTCCAGCAACCAATTTGGGTAGCTGTGTTGACAAAGGCTTGAATGCAGTGCCCTCTTTTGCTAGTACTTCAATTGACAAAACCCCACCAGCATCCCAAGCTCTGGTTGCAGTTCCACCAATTAACGCAAAGCCACTGGCTGTGGTTCCTTTTCATAGGAGATCTGGGCATCCAGCATATGTACAGCGCCGGATGAGGAGACCTTTCTCTGTTTCAGAAGTAGAAGCATTAGTTCAGGCTGTTGAGAAACTTGGAACAGGAAGGTGGCGTGATGTTAAAATGCGTGCTTTTGATAATGCAAAACATCGAACTTATGTGGATTTGAAGGTGAGCGTTCTATTTAATTTACAGAGTAGATTTTTCTTTTTCTTTTTTCAACAATTTTTCGGCAAAACTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

356

Amino Acids

39.74

Weight (kDa)

9.94

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_TPR1	PF23603	100 - 168	2.6e-38	Telomere repeat-binding protein 1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13540 FvH4_6g13540
malus_domestica	MD04G1130300.v1.1 MD12G1143400.v1.1
prunus_persica	Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1
pyrus_communis	pycom12g13810
rosa_chinensis	RchiOBHm_Chr3g0466401
rosa_laevigata	RLG00000024577
rosa_multiflora	Rmu_sc0001716.1_g000002 Rmu_sc0003332.1_g000029 Rmu_sc0003480.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414500
rosa_rugosa	Rorug03G0081500 Rorug03G0081600 Rorug03G0081700
rosa_samantha	Rh3AG128100 Rh3BG149400 Rh3DG150100
rosa_wichuraiana	Rw3G012100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	772
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	3 cut(s)	430, 443, 572
AcsI	RAATTY	2 cut(s)	136, 348
AcuI	CTGAAG	1 cut(s)	467
AfaI	GTAC	2 cut(s)	736, 852
AfiI	CCNNNNNNNGG	3 cut(s)	50, 445, 772
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	9 cut(s)	35, 325, 347, 379, 654, 712, 741, 994, 1046
AjnI	CCWGG	2 cut(s)	614, 643
AluBI	AGCT	5 cut(s)	24, 511, 553, 693, 770
AluI	AGCT	5 cut(s)	24, 511, 553, 693, 770
Alw26I	GTCTC	4 cut(s)	76, 640, 664, 862
AlwI	GGATC	3 cut(s)	430, 443, 572
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	2 cut(s)	136, 348
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
AseI	ATTAAT	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	858
AsuHPI	GGTGA	2 cut(s)	195, 1009
BaeGI	GKGCMC	1 cut(s)	723
BamHI	GGATCC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	2 cut(s)	44, 215
BciT130I	CCWGG	2 cut(s)	616, 645
BcoDI	GTCTC	4 cut(s)	76, 640, 664, 862
BfaI	CTAG	2 cut(s)	440, 732
BfoI	RGCGCY	1 cut(s)	859
BglII	AGATCT	1 cut(s)	830
BisI	GCNGC	2 cut(s)	240, 571
BlsI	GCNGC	2 cut(s)	241, 572
BmcAI	AGTACT	1 cut(s)	736
Bme1390I	CCNGG	2 cut(s)	616, 645
BmiI	GGNNCC	3 cut(s)	437, 537, 816
BmrFI	CCNGG	2 cut(s)	616, 645
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	635, 770, 847
BmuI	ACTGGG	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	588
BsaI	GGTCTC	3 cut(s)	76, 640, 862
BsaJI	CCNNGG	2 cut(s)	531, 644
BsaWI	WCCGGW	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 445, 772
Bse1I	ACTGG	2 cut(s)	493, 810
Bse3DI	GCAATG	1 cut(s)	580
BseBI	CCWGG	2 cut(s)	616, 645
BseDI	CCNNGG	2 cut(s)	531, 644
BseGI	GGATG	4 cut(s)	254, 761, 838, 867
BseLI	CCNNNNNNNGG	3 cut(s)	50, 445, 772
BseMI	GCAATG	1 cut(s)	580
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	493, 810
BseRI	GAGGAG	1 cut(s)	880
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	148, 859
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	3 cut(s)	50, 445, 772
BsmAI	GTCTC	4 cut(s)	76, 640, 664, 862
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	2 cut(s)	619, 718
BsnI	GGCC	1 cut(s)	154
Bso31I	GGTCTC	3 cut(s)	76, 640, 862
Bsp1286I	GDGCHC	2 cut(s)	540, 723
Bsp1407I	TGTACA	1 cut(s)	850
Bsp143I	GATC	5 cut(s)	104, 292, 435, 577, 830
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	300
BspLI	GGNNCC	3 cut(s)	437, 537, 816
BspPI	GGATC	3 cut(s)	430, 443, 572
BspTNI	GGTCTC	3 cut(s)	76, 640, 862
BsrDI	GCAATG	1 cut(s)	580
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	493, 810
BssECI	CCNNGG	2 cut(s)	531, 644
BssMI	GATC	5 cut(s)	104, 292, 435, 577, 830
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	616, 645
Bst4CI	ACNGT	5 cut(s)	74, 185, 252, 367, 388
Bst6I	CTCTTC	2 cut(s)	125, 374
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	1 cut(s)	954
BstDEI	CTNAG	1 cut(s)	308
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	4 cut(s)	254, 761, 838, 867
BstH2I	RGCGCY	1 cut(s)	859
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	5 cut(s)	107, 295, 438, 580, 833
BstMAI	GTCTC	4 cut(s)	76, 640, 664, 862
BstMBI	GATC	5 cut(s)	104, 292, 435, 577, 830
BstMWI	GCNNNNNNNGC	2 cut(s)	767, 776
BstNI	CCWGG	2 cut(s)	616, 645
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	614, 643
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	1 cut(s)	251
BstX2I	RGATCY	2 cut(s)	435, 830
BstYI	RGATCY	2 cut(s)	435, 830
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	4 cut(s)	254, 761, 838, 867
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	2 cut(s)	723, 803
Cac8I	GCNNGC	1 cut(s)	954
CfoI	GCGC	1 cut(s)	858
Csp6I	GTAC	2 cut(s)	735, 851
CviAII	CATG	2 cut(s)	428, 500
CviQI	GTAC	2 cut(s)	735, 851
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	5 cut(s)	106, 294, 437, 579, 832
DpnII	GATC	5 cut(s)	104, 292, 435, 577, 830
Eam1104I	CTCTTC	2 cut(s)	125, 374
EarI	CTCTTC	2 cut(s)	125, 374
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	540
Eco31I	GGTCTC	3 cut(s)	76, 640, 862
Eco57I	CTGAAG	1 cut(s)	467
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	614, 643
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	2 cut(s)	431, 503
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	2 cut(s)	427, 499
FauNDI	CATATG	2 cut(s)	194, 847
Fnu4HI	GCNGC	2 cut(s)	240, 571
FokI	GGATG	4 cut(s)	241, 748, 825, 874
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	2 cut(s)	240, 571
FspBI	CTAG	2 cut(s)	440, 732
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	2 cut(s)	240, 571
GsuI	CTGGAG	1 cut(s)	657
HaeII	RGCGCY	1 cut(s)	859
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	2 cut(s)	148, 859
HhaI	GCGC	1 cut(s)	858
Hin1II	CATG	2 cut(s)	431, 503
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HincII	GTYRAC	2 cut(s)	612, 700
HindII	GTYRAC	2 cut(s)	612, 700
HindIII	AAGCTT	2 cut(s)	509, 551
HinfI	GANTC	1 cut(s)	667
HpaI	GTTAAC	1 cut(s)	612
HpaII	CCGG	2 cut(s)	148, 859
HphI	GGTGA	2 cut(s)	195, 1009
Hpy166II	GTNNAC	4 cut(s)	70, 203, 612, 700
Hpy188I	TCNGA	4 cut(s)	169, 461, 486, 886
Hpy188III	TCNNGA	5 cut(s)	272, 332, 605, 639, 1068
Hpy8I	GTNNAC	4 cut(s)	70, 203, 612, 700
HpyAV	CCTTC	6 cut(s)	288, 331, 448, 591, 924, 988
HpyCH4III	ACNGT	5 cut(s)	74, 185, 252, 367, 388
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	7 cut(s)	198, 234, 362, 626, 716, 779, 968
HpyF10VI	GCNNNNNNNGC	2 cut(s)	767, 776
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	431, 503
HspAI	GCGC	1 cut(s)	856
KspAI	GTTAAC	1 cut(s)	612
Kzo9I	GATC	5 cut(s)	104, 292, 435, 577, 830
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	3 cut(s)	635, 770, 847
MaeI	CTAG	2 cut(s)	440, 732
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	3 cut(s)	89, 179, 400
MalI	GATC	5 cut(s)	106, 294, 437, 579, 832
MboI	GATC	5 cut(s)	104, 292, 435, 577, 830
MboII	GAAGA	4 cut(s)	124, 142, 230, 391
MfeI	CAATTG	2 cut(s)	243, 741
MflI	RGATCY	2 cut(s)	435, 830
MhlI	GDGCHC	2 cut(s)	540, 723
MseI	TTAA	8 cut(s)	38, 126, 144, 315, 611, 792, 945, 1011
MspI	CCGG	2 cut(s)	148, 859
MspR9I	CCNGG	2 cut(s)	616, 645
MunI	CAATTG	2 cut(s)	243, 741
Mva1269I	GAATGC	2 cut(s)	619, 718
MvaI	CCWGG	2 cut(s)	616, 645
MwoI	GCNNNNNNNGC	2 cut(s)	767, 776
NdeI	CATATG	2 cut(s)	194, 847
NdeII	GATC	5 cut(s)	104, 292, 435, 577, 830
NlaIII	CATG	2 cut(s)	431, 503
NlaIV	GGNNCC	3 cut(s)	437, 537, 816
NspI	RCATGY	1 cut(s)	431
PciI	ACATGT	1 cut(s)	427
PctI	GAATGC	2 cut(s)	619, 718
PfeI	GAWTC	1 cut(s)	667
PflMI	CCANNNNNTGG	1 cut(s)	772
PkrI	GCNGC	2 cut(s)	241, 572
PscI	ACATGT	1 cut(s)	427
PshBI	ATTAAT	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	614, 643
PspGI	CCWGG	2 cut(s)	614, 643
PspN4I	GGNNCC	3 cut(s)	437, 537, 816
PsuI	RGATCY	2 cut(s)	435, 830
RsaI	GTAC	2 cut(s)	736, 852
RsaNI	GTAC	2 cut(s)	735, 851
SaqAI	TTAA	8 cut(s)	38, 126, 144, 315, 611, 792, 945, 1011
SatI	GCNGC	2 cut(s)	240, 571
Sau3AI	GATC	5 cut(s)	104, 292, 435, 577, 830
ScaI	AGTACT	1 cut(s)	736
ScrFI	CCNGG	2 cut(s)	616, 645
SduI	GDGCHC	2 cut(s)	540, 723
SfaNI	GCATC	3 cut(s)	635, 770, 847
SmlI	CTYRAG	1 cut(s)	603
SmoI	CTYRAG	1 cut(s)	603
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	2 cut(s)	440, 732
StyD4I	CCNGG	2 cut(s)	614, 643
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	5 cut(s)	74, 185, 252, 367, 388
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	271, 976
TatI	WGTACW	2 cut(s)	734, 850
TauI	GCSGC	1 cut(s)	573
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	8 cut(s)	38, 126, 144, 315, 611, 792, 945, 1011
Tru9I	TTAA	8 cut(s)	38, 126, 144, 315, 611, 792, 945, 1011
TscAI	CASTG	2 cut(s)	723, 810
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	363, 812
TspRI	CASTG	2 cut(s)	723, 810
Van91I	CCANNNNNTGG	1 cut(s)	772
VspI	ATTAAT	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	2 cut(s)	136, 348
XceI	RCATGY	1 cut(s)	431
XspI	CTAG	2 cut(s)	440, 732
ZrmI	AGTACT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.