Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001716.1

Orthogroup ID

OG0009697

Physical Location & Seq

Genomic Coordinates Reverse (-)

6507 .. 7133

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001716.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggaaggaaagcctgctaaactggtcagttctaaacatgatgtaaaggtgcctttttcaggggactgcaaaaaacatggttctttcctttgccaatatgttaaagcagttagtagagatgatgacgaaaattctgttgagtatgtccaaccttgtaccatggtagaggagtttgtgtgcatacctgttggtgataagaaaataaagagtctatcagcatcccagcacggagtagctccagatatgaagattgggggttatcatagaactgatggaaaaataaagcaagtcagtaccttctcactgcaaaatggaagtacttcaaagcagacaaggagctttggtccagaacatgatctctcacaaaaatttggggatccttttgggaactttaatgaggaaagctataataattttcaagagcacaacaacagcagtagctattttcaattttcaaacaacagggttctcaactacaacaatgaaaacaatggcaaagtggaggttttttcacagcagcaaaatggaggtttgcaacaaaataacaaactgcaacaacttggtgccttcacagaacttggtgttgtgcctcctgtaaccaacatgactcaatctcaacatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

208

Amino Acids

23.19

Weight (kDa)

6.38

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13540 FvH4_6g13540
malus_domestica	MD04G1130300.v1.1 MD12G1143400.v1.1
prunus_persica	Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1
pyrus_communis	pycom12g13810
rosa_chinensis	RchiOBHm_Chr3g0466401
rosa_laevigata	RLG00000024577
rosa_multiflora	Rmu_sc0001716.1_g000002 Rmu_sc0003332.1_g000029 Rmu_sc0003480.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414500
rosa_rugosa	Rorug03G0081500 Rorug03G0081600 Rorug03G0081700
rosa_samantha	Rh3AG128100 Rh3BG149400 Rh3DG150100
rosa_wichuraiana	Rw3G012100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	49, 563
AclWI	GGATC	2 cut(s)	371, 384
AcsI	RAATTY	2 cut(s)	130, 368
AfaI	GTAC	3 cut(s)	157, 295, 319
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	4 cut(s)	324, 419, 449, 456
AluBI	AGCT	4 cut(s)	236, 339, 405, 441
AluI	AGCT	4 cut(s)	236, 339, 405, 441
Alw21I	GWGCWC	1 cut(s)	426
AlwI	GGATC	2 cut(s)	371, 384
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	2 cut(s)	130, 368
Asp700I	GAANNNNTTC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	376
BanI	GGYRCC	2 cut(s)	49, 563
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	1 cut(s)	266
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
BmcAI	AGTACT	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	3 cut(s)	51, 378, 565
BmsI	GCATC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	159
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 328, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	529
BseYI	CCCAGC	1 cut(s)	222
BshNI	GGYRCC	2 cut(s)	49, 563
BsiHKAI	GWGCWC	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	355, 376
Bsp19I	CCATGG	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	51, 378, 565
BspPI	GGATC	2 cut(s)	371, 384
BspT107I	GGYRCC	2 cut(s)	49, 563
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	355, 376
BssT1I	CCWWGG	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	159
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	2 cut(s)	358, 379
BstMBI	GATC	2 cut(s)	355, 376
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	218
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	3 cut(s)	156, 294, 318
CviAII	CATG	6 cut(s)	38, 77, 160, 353, 604, 620
CviJI	RGCY	5 cut(s)	13, 236, 339, 405, 441
CviKI_1	RGCY	5 cut(s)	13, 236, 339, 405, 441
CviQI	GTAC	3 cut(s)	156, 294, 318
DpnI	GATC	2 cut(s)	357, 378
DpnII	GATC	2 cut(s)	355, 376
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	6 cut(s)	41, 80, 163, 356, 607, 623
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	6 cut(s)	37, 76, 159, 352, 603, 619
Fnu4HI	GCNGC	1 cut(s)	518
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	518
GluI	GCNGC	1 cut(s)	518
GsaI	CCCAGC	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	222
Hin1II	CATG	6 cut(s)	41, 80, 163, 356, 607, 623
HinfI	GANTC	2 cut(s)	208, 607
HphI	GGTGA	1 cut(s)	203
Hpy188III	TCNNGA	3 cut(s)	239, 347, 419
HpyAV	CCTTC	2 cut(s)	307, 577
HpyCH4V	TGCA	5 cut(s)	69, 180, 307, 535, 553
Hsp92II	CATG	6 cut(s)	41, 80, 163, 356, 607, 623
Kzo9I	GATC	2 cut(s)	355, 376
LmnI	GCTCC	2 cut(s)	241, 336
LpnPI	CCDG	9 cut(s)	8, 27, 45, 198, 236, 252, 360, 448, 606
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	357, 378
MboI	GATC	2 cut(s)	355, 376
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	4 cut(s)	130, 368, 412, 449
MlyI	GAGTC	2 cut(s)	217, 601
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	160, 391, 496, 521, 600
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	2 cut(s)	102, 393
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	355, 376
NlaIII	CATG	6 cut(s)	41, 80, 163, 356, 607, 623
NlaIV	GGNNCC	3 cut(s)	51, 378, 565
PdmI	GAANNNNTTC	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	519
PleI	GAGTC	2 cut(s)	216, 601
PpsI	GAGTC	2 cut(s)	216, 601
PspFI	CCCAGC	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	51, 378, 565
PspPI	GGNCC	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	3 cut(s)	157, 295, 319
RsaNI	GTAC	3 cut(s)	156, 294, 318
SaqAI	TTAA	2 cut(s)	102, 393
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	2 cut(s)	355, 376
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	2 cut(s)	217, 601
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	227
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	4 cut(s)	130, 368, 412, 449
StyI	CCWWGG	1 cut(s)	159
TasI	AATT	4 cut(s)	130, 368, 412, 449
TatI	WGTACW	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	102, 393
Tru9I	TTAA	2 cut(s)	102, 393
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	260, 498
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	344
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	2 cut(s)	130, 368
XmnI	GAANNNNTTC	1 cut(s)	319
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.