Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003332.1

Orthogroup ID

OG0009697

Physical Location & Seq

Genomic Coordinates Forward (+)

140855 .. 141911

Gene Structure 1057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003332.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggtaccgcagaggagggtggattatggcttcaatggctaccaagtgcctgaggttcctcgagcttctagatcagctaggggaaagggacctatcaggaagaaacttgaaggcaaccagattcatgcgtttgagattttggctagtgtagctggtaaactattggagagtgaaaaacctctacctagtaatgcttctagtggaaaggatcctcattacacatttgatgataccataaggaagcaacagaataaaggaaactcattgaaggaagaaccttgtgagtggggaagctgtgatgaagaagcctctttccgtgcctgtggggtgcaagggcaaagtcatactctgaatcagttttcacatctacaagaaaactttagttttgagatgagtgggacatcaaaaactaatgatcactcggggaaggtttgttttgctaaaaagttgggtacggttgacagcagttcttcttgtggaagctattctaacaaagtaatcagtgactgtttcttatctggggattatattgaagaggaagacaaagcacatgttgtactaaagaggaaactagaggctgaaccatcaaaggatacaagtgtaaaggatggaaaagccaatgttttagtctgttcagaagatttgctagaaatggaaggaaagcctcctgaattggtctgttctgaacatgatgtaaaggttcctttttcaggggaatgcaaaattcatggttctttcccctgccattgtgttaaagtagttagtagagatgatgacgaaaattctgttgggtatgtccaaccctgtaccatggtagaggagtttgagcacacatctgttggtgataggaaaataaagaatctgtcagcatccaagcactggagaatagctccagatatgaagattgggggttatcatagaactggtaattggctttacaatccactgttgttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

318

Amino Acids

35.31

Weight (kDa)

6.19

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13540 FvH4_6g13540
malus_domestica	MD04G1130300.v1.1 MD12G1143400.v1.1
prunus_persica	Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1 Prupe.6G256900_v2.0.a1
pyrus_communis	pycom12g13810
rosa_chinensis	RchiOBHm_Chr3g0466401
rosa_laevigata	RLG00000024577
rosa_multiflora	Rmu_sc0001716.1_g000002 Rmu_sc0003332.1_g000029 Rmu_sc0003480.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414500
rosa_rugosa	Rorug03G0081500 Rorug03G0081600 Rorug03G0081700
rosa_samantha	Rh3AG128100 Rh3BG149400 Rh3DG150100
rosa_wichuraiana	Rw3G012100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	879
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	203, 216
AcsI	RAATTY	2 cut(s)	723, 781
AfaI	GTAC	4 cut(s)	6, 454, 558, 808
AfiI	CCNNNNNNNGG	2 cut(s)	710, 879
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	34, 110, 268, 533
AjuI	GAANNNNNNNTTGG	4 cut(s)	771, 803, 913, 945
AluBI	AGCT	6 cut(s)	65, 77, 152, 294, 483, 890
AluI	AGCT	6 cut(s)	65, 77, 152, 294, 483, 890
Alw21I	GWGCWC	1 cut(s)	831
AlwI	GGATC	2 cut(s)	203, 216
AlwNI	CAGNNNCTG	1 cut(s)	507
Ama87I	CYCGRG	2 cut(s)	60, 421
ApoI	RAATTY	2 cut(s)	723, 781
Asp700I	GAANNNNTTC	1 cut(s)	484
Asp718I	GGTACC	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	854
AvaI	CYCGRG	2 cut(s)	60, 421
AvaII	GGWCC	1 cut(s)	89
AxyI	CCTNAGG	1 cut(s)	51
BaeI	ACNNNNGTAYC	2 cut(s)	585, 618
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	831
BccI	CCATC	2 cut(s)	592, 602
BciVI	GTATCC	1 cut(s)	586
BclI	TGATCA	1 cut(s)	415
BfaI	CTAG	7 cut(s)	69, 78, 144, 186, 198, 572, 647
BfuI	GTATCC	1 cut(s)	586
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	2 cut(s)	60, 421
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	5 cut(s)	6, 57, 90, 210, 702
BmsI	GCATC	1 cut(s)	878
BpiI	GAAGAC	1 cut(s)	546
BplI	GAGNNNNNCTC	2 cut(s)	874, 906
BpmI	CTGGAG	2 cut(s)	876, 901
BsaJI	CCNNGG	1 cut(s)	810
Bsc4I	CCNNNNNNNGG	2 cut(s)	710, 879
Bse1I	ACTGG	2 cut(s)	884, 928
Bse21I	CCTNAGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	810
BseGI	GGATG	2 cut(s)	613, 869
BseLI	CCNNNNNNNGG	2 cut(s)	710, 879
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	884, 928
BseRI	GAGGAG	2 cut(s)	28, 833
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	831
BsiHKCI	CYCGRG	2 cut(s)	60, 421
BslFI	GGGAC	2 cut(s)	102, 412
BslI	CCNNNNNNNGG	2 cut(s)	710, 879
BsmFI	GGGAC	2 cut(s)	102, 412
BsmI	GAATGC	1 cut(s)	722
BsoBI	CYCGRG	2 cut(s)	60, 421
Bsp1286I	GDGCHC	1 cut(s)	831
Bsp143I	GATC	3 cut(s)	71, 208, 415
Bsp19I	CCATGG	1 cut(s)	810
BspACI	CCGC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	5 cut(s)	6, 57, 90, 210, 702
BspPI	GGATC	2 cut(s)	203, 216
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	884, 928
BssECI	CCNNGG	1 cut(s)	810
BssMI	GATC	3 cut(s)	71, 208, 415
BssT1I	CCWWGG	1 cut(s)	810
Bst4CI	ACNGT	3 cut(s)	457, 509, 948
Bst6I	CTCTTC	1 cut(s)	528
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	810
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstF5I	GGATG	2 cut(s)	613, 869
BstKTI	GATC	3 cut(s)	74, 211, 418
BstMBI	GATC	3 cut(s)	71, 208, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 149
BstNSI	RCATGY	1 cut(s)	554
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	810
BtsCI	GGATG	2 cut(s)	613, 869
BtsIMutI	CAGTG	3 cut(s)	508, 877, 944
CaiI	CAGNNNCTG	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	4 cut(s)	5, 453, 557, 807
CviAII	CATG	5 cut(s)	125, 551, 689, 728, 811
CviQI	GTAC	4 cut(s)	5, 453, 557, 807
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	3 cut(s)	73, 210, 417
DpnII	GATC	3 cut(s)	71, 208, 415
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	810
Eco47I	GGWCC	1 cut(s)	89
Eco81I	CCTNAGG	1 cut(s)	51
Eco88I	CYCGRG	2 cut(s)	60, 421
EcoNI	CCTNNNNNAGG	1 cut(s)	708
EcoO109I	RGGNCCY	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	810
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	5 cut(s)	128, 554, 692, 731, 814
FaqI	GGGAC	2 cut(s)	102, 412
FatI	CATG	5 cut(s)	124, 550, 688, 727, 810
FbaI	TGATCA	1 cut(s)	415
FokI	GGATG	2 cut(s)	620, 856
FspBI	CTAG	7 cut(s)	69, 78, 144, 186, 198, 572, 647
GsuI	CTGGAG	2 cut(s)	876, 901
Hin1II	CATG	5 cut(s)	128, 554, 692, 731, 814
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	121, 352, 859
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	2 cut(s)	158, 460
Hpy188I	TCNGA	3 cut(s)	351, 637, 685
Hpy188III	TCNNGA	4 cut(s)	69, 97, 668, 893
Hpy8I	GTNNAC	2 cut(s)	158, 460
HpyAV	CCTTC	4 cut(s)	104, 262, 421, 650
HpyCH4III	ACNGT	3 cut(s)	457, 509, 948
HpyCH4V	TGCA	2 cut(s)	331, 720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 149
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	5 cut(s)	128, 554, 692, 731, 814
KpnI	GGTACC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	71, 208, 415
LmnI	GCTCC	1 cut(s)	895
LweI	GCATC	1 cut(s)	878
MaeI	CTAG	7 cut(s)	69, 78, 144, 186, 198, 572, 647
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	3 cut(s)	73, 210, 417
MboI	GATC	3 cut(s)	71, 208, 415
MboII	GAAGA	8 cut(s)	112, 284, 314, 462, 545, 551, 650, 913
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	831
MluCI	AATT	4 cut(s)	671, 723, 781, 928
MmeI	TCCRAC	1 cut(s)	823
MroXI	GAANNNNTTC	1 cut(s)	484
MseI	TTAA	2 cut(s)	753, 955
Mva1269I	GAATGC	1 cut(s)	722
MwoI	GCNNNNNNNGC	2 cut(s)	36, 149
NcoI	CCATGG	1 cut(s)	810
NdeII	GATC	3 cut(s)	71, 208, 415
NlaIII	CATG	5 cut(s)	128, 554, 692, 731, 814
NlaIV	GGNNCC	5 cut(s)	6, 57, 90, 210, 702
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	1 cut(s)	554
PaeR7I	CTCGAG	1 cut(s)	60
PciI	ACATGT	1 cut(s)	550
PctI	GAATGC	1 cut(s)	722
PdmI	GAANNNNTTC	1 cut(s)	484
PfeI	GAWTC	3 cut(s)	121, 352, 859
PflMI	CCANNNNNTGG	1 cut(s)	879
PpuMI	RGGWCCY	1 cut(s)	89
PscI	ACATGT	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	89
PspN4I	GGNNCC	5 cut(s)	6, 57, 90, 210, 702
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PspXI	VCTCGAGB	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	507
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	4 cut(s)	6, 454, 558, 808
RsaNI	GTAC	4 cut(s)	5, 453, 557, 807
SaqAI	TTAA	2 cut(s)	753, 955
Sau3AI	GATC	3 cut(s)	71, 208, 415
Sau96I	GGNCC	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	831
SfaNI	GCATC	1 cut(s)	878
Sfr274I	CTCGAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	4 cut(s)	671, 723, 781, 928
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	7 cut(s)	69, 78, 144, 186, 198, 572, 647
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	3 cut(s)	457, 509, 948
TaqI	TCGA	1 cut(s)	61
TasI	AATT	4 cut(s)	671, 723, 781, 928
TatI	WGTACW	1 cut(s)	556
TfiI	GAWTC	3 cut(s)	121, 352, 859
Tru1I	TTAA	2 cut(s)	753, 955
Tru9I	TTAA	2 cut(s)	753, 955
TscAI	CASTG	3 cut(s)	508, 884, 951
TseFI	GTSAC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	4 cut(s)	113, 315, 716, 914
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	3 cut(s)	508, 884, 951
Van91I	CCANNNNNTGG	1 cut(s)	879
VpaK11BI	GGWCC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	708
XapI	RAATTY	2 cut(s)	723, 781
XbaI	TCTAGA	1 cut(s)	68
XceI	RCATGY	1 cut(s)	554
XhoI	CTCGAG	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	484
XspI	CTAG	7 cut(s)	69, 78, 144, 186, 198, 572, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.