Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004893

Physical Location & Seq

Genomic Coordinates Forward (+)

28113565 .. 28117620

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1200300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGAAGTTTGATGAGTTTAAATTGGAGGTGACAGAAATGTTTGGTTGCAACAATAACATGGTCTTCAAGTACTTCCTCCCTGGCAACAAGAAGACCCTGATTACTGTTTCCAATGACAAGGATCTTCATCGCATGATCAAGTTCCATGGTGATTTTGCAACCATTGATGTTTATATTATGGAGGAAGTAGCTCCTCCTGATGTCTCGAACATGCCTGCCAGTAGGTCAAGCAGAACAACTCTGTCAGAAACTGTGGTTCCAGTTGATGCATCTCTCGATGTTGTGGACTTTGTGGGTGATACCACCCAGCCTGATATCCCACTCAATGCCTCGCTTGATGTTATCGATGATGCCAGCCCTATTGATGCACATATTGATATACCCACTGAAATATCACCCGTTTTCCCTCTTGTTGGCCCGAATGATGAGAAGCATGCTAAAGGTGCACAGCAGTGGCAGAATGCAATTACGGGTGTGGGCCAAAGATTCAGCAGCGTTCATGAATTTCGTGAATCGTTGCGCAAGTATGCCATTGCGCGTCAGTTCGCCTTTAGGTATAAGAAGAATGATAGTCATCGTGTGACTGTCAAGTGTAAGGCTGAAGGCTGCCCTTGGAGAATTCATGCATCAAGGTTGTCGACAACGCAGTTAATATGTATTAAGAAGATGAATCCAACGCATTCCTGCGAAGGCGCTGCTGCAACTACAGGGCATCAGGCGACAAGGAGTTGGGTGGCTAGTATAATTAAGGAGAAGTTAAAATATATGCCCAACTATAAGCCCAAGGATATTGTGAACGATATCAAGCAGGAATATGGAATACAGCTAAACTACTTCCAGGCCTGGCGTGGGAAAGAAATAGCAAAGGAGCAGCTTCAGGGTTCGTACAAAGAGGCATATAATCAGTTACCATTTTTCTGTGACAGGATAATGGAGACAAACCCTGGTAGTCTTGCTACTTTTACCACCAAGGAAGACTCCAGTTTCCATCGTCTCTTTGTCTCTTTCCATGCCTCATTGTATGGGTTCCAGCAAGGTTGCAGGCCTCTCCTTTTCCTGGATAGCATTCCCTTAAAATCAAAATATCAAGGCACATTGTTGGCTGCAACAGCTGCGGATGGGGATGATGAGGTTTTCCCTGTTGCGTTCACAGTGGTGGATGCAGAAACTGATGATAACTGGCATTGGTTTTTACTACAATTGAAATCTGCATTCTCAATATCTTGTCCCGTGACATTTGTGGCAGACAGACAGAAGGGATTGAAAGAATCAATTGCGGAAATATTTAAAGACTCATACCATGGCTATTGCCTGCGATATTTGACCGAGCAACTTATCAGGGACTTGAAAGGGCAGTTTTCTCATGAGGTCAAACGGCTCATGATTGAGGATTTTTATGGTGCTGCTTATGCACCTAGGCCCGAAAACTTTCAAAGTTGTCTTGAAAGCATAAAAAGCATCTCACTGGAGGCTTACAATTGGATCATACAAACTGAGCCCCAGAAGTGGGCGAATTCATTCTTTCAAGGGGCTAGATATAACCACATGACATCAAACTTTGGAGAGCTGTTCTATTGTTGGGCATCGGATGCACACGAGTTACCAATAACACAGATGGTTGATGTGATCAGGGGTAAGATTATGGAGTTGATCTACTCAAGAAGGGAAGGATCTAATGAATGGTTGACGAGGCTTGCTCCATCCATGGAGGAAAAGCTAGAAAAGGAAACTCAGAAAATCAGAAACCTCCAAGTTCTACTGTTGGCTGGTGGTAGCAGATTTGAGGTTCATGGTGACACCACTGAAGTTGTAGATGTTGATCGCTGGGACTGTAGTTGTAGAGGGTGGCAGATAACTGGTTTGCCATGCTGTCATGCAATTGCTGTCATTCGTTGCTTGGGCAGGAGCCCATATGATTATTGTTCAAGATACTTTACCACCGAGAGCTATAGATTGACATACTCAGAACCAATACTTCCTGTTCCAAATGTAGACATACCTGTGATGAAGGCTTCTTCTCAAGTACTAGTGACCGTAACCCCTCCTCCCACCCGACGTCCACCAGGCAGGCCTACTACTAAGAAATATGGATCACAAGATATGGCTAAGCGTCAACTCCAGTGCAGCAGATGCAAGGGTCTTGGGCACAACAAGTCCACTTGCAAAGAGATTGCATCCGATAGGGCGAGGGCGAGGGCGAGGGCATCATCTGTACTAGTAGAAGCTCAAATAGACAGCGGGGGATGTGTTCCCGAATGTATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

756

Amino Acids

85.59

Weight (kDa)

7.23

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	155 - 220	8.3e-31	MuDR family transposase
MULE	PF10551	351 - 442	3.5e-13	MULE transposase domain
SWIM	PF04434	603 - 633	7.4e-10	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05850
fragaria_vesca	FvH4_6g08441 FvH4_6g08441 FvH4_6g08441 FvH4_6g08441 FvH4_6g08441 FvH4_6g08441 FvH4_6g08441 FvH4_6g08441
malus_domestica	MD04G1186800.v1.1 MD12G1200300.v1.1
prunus_persica	Prupe.6G305400_v2.0.a1 Prupe.6G305400_v2.0.a1 Prupe.6G305400_v2.0.a1 Prupe.6G305400_v2.0.a1
pyrus_communis	pycom04g16490
rosa_chinensis	RchiOBHm_Chr3g0458421
rosa_laevigata	RLG00000025158
rosa_roxburghii	Rroxscaffold_6G00421080
rosa_rugosa	Rorug03G0027800 Rorug03G0027900 Rorug03G0028000 Rorug03G0028100 Rorug03G0028200 Rorug03G0028300
rosa_samantha	Rh3AG087600 Rh3BG090400 Rh3CG090700 Rh3DG091300
rosa_wichuraiana	Rw3G007440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2059
Acc16I	TGCGCA	1 cut(s)	521
AccI	GTMKAC	2 cut(s)	638, 1992
AccII	CGCG	1 cut(s)	538
AciI	CCGC	3 cut(s)	1115, 1277, 2238
AclWI	GGATC	4 cut(s)	129, 1490, 1678, 2098
AcsI	RAATTY	3 cut(s)	503, 618, 1513
AcuI	CTGAAG	3 cut(s)	621, 860, 1824
AcyI	GRCGYC	1 cut(s)	2056
AfaI	GTAC	4 cut(s)	71, 887, 2025, 2214
AfiI	CCNNNNNNNGG	5 cut(s)	413, 849, 1057, 1506, 1507
AgsI	TTSAA	8 cut(s)	67, 1204, 1264, 1348, 1433, 1445, 1526, 1926
AhlI	ACTAGT	2 cut(s)	2026, 2215
AjnI	CCWGG	6 cut(s)	79, 837, 842, 943, 1056, 2062
AleI	CACNNNNGTG	2 cut(s)	451, 1154
AluBI	AGCT	8 cut(s)	191, 826, 874, 1112, 1567, 1717, 1947, 2225
AluI	AGCT	8 cut(s)	191, 826, 874, 1112, 1567, 1717, 1947, 2225
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	4 cut(s)	208, 929, 998, 1006
Alw44I	GTGCAC	1 cut(s)	444
AlwI	GGATC	4 cut(s)	129, 1490, 1678, 2098
AlwNI	CAGNNNCTG	2 cut(s)	251, 1169
AoxI	GGCC	6 cut(s)	415, 478, 840, 1043, 1418, 2069
ApaLI	GTGCAC	1 cut(s)	444
ApeKI	GCWGC	9 cut(s)	492, 606, 695, 698, 871, 1103, 1112, 1403, 2124
ApoI	RAATTY	3 cut(s)	503, 618, 1513
Asp700I	GAANNNNTTC	2 cut(s)	1428, 1517
AspA2I	CCTAGG	1 cut(s)	1415
AspLEI	GCGC	3 cut(s)	522, 538, 695
AspS9I	GGNCC	3 cut(s)	416, 478, 1419
AsuHPI	GGTGA	5 cut(s)	40, 161, 308, 387, 1805
AvrII	CCTAGG	1 cut(s)	1415
BaeGI	GKGCMC	2 cut(s)	448, 2148
BanII	GRGCYC	2 cut(s)	1500, 1910
BauI	CACGAG	1 cut(s)	1595
BbsI	GAAGAC	3 cut(s)	55, 98, 981
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	9 cut(s)	504, 593, 682, 685, 883, 1090, 1099, 1390, 2136
BccI	CCATC	4 cut(s)	996, 1112, 1609, 1708
BceAI	ACGGC	1 cut(s)	1391
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	6 cut(s)	81, 839, 844, 945, 1058, 2064
BclI	TGATCA	2 cut(s)	135, 1626
BcoDI	GTCTC	4 cut(s)	208, 929, 998, 1006
BcuI	ACTAGT	2 cut(s)	2026, 2215
BfaI	CTAG	6 cut(s)	738, 1416, 1533, 1718, 2027, 2216
BfmI	CTRYAG	3 cut(s)	705, 1831, 1948
BfoI	RGCGCY	1 cut(s)	696
BisI	GCNGC	9 cut(s)	493, 607, 696, 699, 872, 1104, 1113, 1404, 2125
BlnI	CCTAGG	1 cut(s)	1415
BlpI	GCTNAGC	1 cut(s)	2106
BlsI	GCNGC	9 cut(s)	494, 608, 697, 700, 873, 1105, 1114, 1405, 2126
BmcAI	AGTACT	2 cut(s)	71, 2025
Bme1390I	CCNGG	6 cut(s)	81, 839, 844, 945, 1058, 2064
BmgT120I	GGNCC	3 cut(s)	416, 478, 1419
BmiI	GGNNCC	3 cut(s)	258, 1028, 1907
BmrFI	CCNGG	6 cut(s)	81, 839, 844, 945, 1058, 2064
BpiI	GAAGAC	3 cut(s)	55, 98, 981
BplI	GAGNNNNNCTC	2 cut(s)	1681, 1713
BpmI	CTGGAG	3 cut(s)	964, 1487, 2102
Bpu1102I	GCTNAGC	1 cut(s)	2106
BpuEI	CTTGAG	2 cut(s)	1642, 2004
Bsa29I	ATCGAT	1 cut(s)	345
BsaBI	GATNNNNATC	3 cut(s)	126, 573, 1818
BsaHI	GRCGYC	1 cut(s)	2056
BsaJI	CCNNGG	9 cut(s)	79, 145, 611, 783, 943, 969, 1300, 1415, 1704
BsaXI	ACNNNNNCTCC	2 cut(s)	2029, 2059
Bsc4I	CCNNNNNNNGG	5 cut(s)	413, 849, 1057, 1506, 1507
Bse1I	ACTGG	7 cut(s)	219, 260, 981, 1184, 1470, 1861, 2119
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	3 cut(s)	126, 573, 1818
BseBI	CCWGG	6 cut(s)	81, 839, 844, 945, 1058, 2064
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	9 cut(s)	79, 145, 611, 783, 943, 969, 1300, 1415, 1704
BseGI	GGATG	7 cut(s)	1123, 1129, 1165, 1594, 1700, 2174, 2249
BseJI	GATNNNNATC	3 cut(s)	126, 573, 1818
BseLI	CCNNNNNNNGG	5 cut(s)	413, 849, 1057, 1506, 1507
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	1485, 1745, 1977
BseNI	ACTGG	7 cut(s)	219, 260, 981, 1184, 1470, 1861, 2119
BseRI	GAGGAG	2 cut(s)	183, 2034
BseSI	GKGCMC	2 cut(s)	448, 2148
BseXI	GCAGC	9 cut(s)	504, 593, 682, 685, 883, 1090, 1099, 1390, 2136
BseYI	CCCAGC	2 cut(s)	306, 1824
BsgI	GTGCAG	1 cut(s)	2143
Bsh1236I	CGCG	1 cut(s)	538
BshFI	GGCC	6 cut(s)	417, 480, 842, 1045, 1420, 2071
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	448
BslFI	GGGAC	3 cut(s)	1212, 1355, 1841
BslI	CCNNNNNNNGG	5 cut(s)	413, 849, 1057, 1506, 1507
BsmAI	GTCTC	4 cut(s)	208, 929, 998, 1006
BsmBI	CGTCTC	1 cut(s)	998
BsmFI	GGGAC	3 cut(s)	1212, 1355, 1841
BsmI	GAATGC	4 cut(s)	466, 679, 1065, 1211
BsnI	GGCC	6 cut(s)	417, 480, 842, 1045, 1420, 2071
Bsp1286I	GDGCHC	4 cut(s)	448, 1500, 1910, 2148
Bsp143I	GATC	8 cut(s)	121, 135, 1482, 1626, 1650, 1670, 1819, 2090
Bsp1720I	GCTNAGC	1 cut(s)	2106
Bsp19I	CCATGG	3 cut(s)	145, 1300, 1704
BspACI	CCGC	3 cut(s)	1115, 1277, 2238
BspANI	GGCC	6 cut(s)	417, 480, 842, 1045, 1420, 2071
BspCNI	CTCAG	3 cut(s)	1486, 1744, 1976
BspDI	ATCGAT	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	538
BspHI	TCATGA	3 cut(s)	499, 1363, 1380
BspLI	GGNNCC	3 cut(s)	258, 1028, 1907
BspPI	GGATC	4 cut(s)	129, 1490, 1678, 2098
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	7 cut(s)	219, 260, 981, 1184, 1470, 1861, 2119
BssECI	CCNNGG	9 cut(s)	79, 145, 611, 783, 943, 969, 1300, 1415, 1704
BssMI	GATC	8 cut(s)	121, 135, 1482, 1626, 1650, 1670, 1819, 2090
BssNI	GRCGYC	1 cut(s)	2056
BssSI	CACGAG	1 cut(s)	1595
BssT1I	CCWWGG	7 cut(s)	145, 611, 783, 969, 1300, 1415, 1704
Bst2BI	CACGAG	1 cut(s)	1595
Bst2UI	CCWGG	6 cut(s)	81, 839, 844, 945, 1058, 2064
Bst4CI	ACNGT	7 cut(s)	106, 253, 586, 1153, 1761, 1832, 2035
BstACI	GRCGYC	1 cut(s)	2056
BstAPI	GCANNNNNTGC	3 cut(s)	1112, 1589, 2130
BstC8I	GCNNGC	7 cut(s)	216, 355, 435, 1043, 1313, 1695, 2069
BstDEI	CTNAG	5 cut(s)	1494, 1731, 1963, 2079, 2106
BstDSI	CCRYGG	3 cut(s)	145, 1300, 1704
BstF5I	GGATG	7 cut(s)	1123, 1129, 1165, 1594, 1700, 2174, 2249
BstFNI	CGCG	1 cut(s)	538
BstH2I	RGCGCY	1 cut(s)	696
BstHHI	GCGC	3 cut(s)	522, 538, 695
BstKTI	GATC	8 cut(s)	124, 138, 1485, 1629, 1653, 1673, 1822, 2093
BstMAI	GTCTC	4 cut(s)	208, 929, 998, 1006
BstMBI	GATC	8 cut(s)	121, 135, 1482, 1626, 1650, 1670, 1819, 2090
BstMWI	GCNNNNNNNGC	7 cut(s)	443, 1109, 1112, 1409, 1455, 1589, 2130
BstNI	CCWGG	6 cut(s)	81, 839, 844, 945, 1058, 2064
BstNSI	RCATGY	2 cut(s)	214, 437
BstSCI	CCNGG	6 cut(s)	79, 837, 842, 943, 1056, 2062
BstSFI	CTRYAG	3 cut(s)	705, 1831, 1948
BstSLI	GKGCMC	2 cut(s)	448, 2148
BstUI	CGCG	1 cut(s)	538
BstV1I	GCAGC	9 cut(s)	504, 593, 682, 685, 883, 1090, 1099, 1390, 2136
BstV2I	GAAGAC	3 cut(s)	55, 98, 981
BstX2I	RGATCY	2 cut(s)	121, 1670
BstYI	RGATCY	2 cut(s)	121, 1670
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	6 cut(s)	417, 480, 842, 1045, 1420, 2071
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	3 cut(s)	145, 1300, 1704
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	7 cut(s)	1123, 1129, 1165, 1594, 1700, 2174, 2249
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	6 cut(s)	384, 458, 1158, 1463, 1800, 2126
Cac8I	GCNNGC	7 cut(s)	216, 355, 435, 1043, 1313, 1695, 2069
CaiI	CAGNNNCTG	2 cut(s)	251, 1169
CciI	TCATGA	3 cut(s)	499, 1363, 1380
CfoI	GCGC	3 cut(s)	522, 538, 695
Cfr13I	GGNCC	3 cut(s)	416, 478, 1419
ClaI	ATCGAT	1 cut(s)	345
CseI	GACGC	2 cut(s)	527, 2099
Csp6I	GTAC	4 cut(s)	70, 886, 2024, 2213
CspCI	CAANNNNNGTGG	2 cut(s)	1789, 1824
CviQI	GTAC	4 cut(s)	70, 886, 2024, 2213
DdeI	CTNAG	5 cut(s)	1494, 1731, 1963, 2079, 2106
DpnI	GATC	8 cut(s)	123, 137, 1484, 1628, 1652, 1672, 1821, 2092
DpnII	GATC	8 cut(s)	121, 135, 1482, 1626, 1650, 1670, 1819, 2090
DraI	TTTAAA	2 cut(s)	19, 1288
Eco130I	CCWWGG	7 cut(s)	145, 611, 783, 969, 1300, 1415, 1704
Eco147I	AGGCCT	3 cut(s)	842, 1045, 2071
Eco24I	GRGCYC	2 cut(s)	1500, 1910
Eco32I	GATATC	2 cut(s)	316, 802
Eco57I	CTGAAG	3 cut(s)	621, 860, 1824
EcoRI	GAATTC	2 cut(s)	618, 1513
EcoRII	CCWGG	6 cut(s)	79, 837, 842, 943, 1056, 2062
EcoRV	GATATC	2 cut(s)	316, 802
EcoT14I	CCWWGG	7 cut(s)	145, 611, 783, 969, 1300, 1415, 1704
EcoT22I	ATGCAT	2 cut(s)	271, 628
EcoT38I	GRGCYC	2 cut(s)	1500, 1910
ErhI	CCWWGG	7 cut(s)	145, 611, 783, 969, 1300, 1415, 1704
Esp3I	CGTCTC	1 cut(s)	998
FaqI	GGGAC	3 cut(s)	1212, 1355, 1841
FauI	CCCGC	1 cut(s)	2231
FauNDI	CATATG	1 cut(s)	1912
FbaI	TGATCA	2 cut(s)	135, 1626
FblI	GTMKAC	2 cut(s)	638, 1992
Fnu4HI	GCNGC	9 cut(s)	493, 607, 696, 699, 872, 1104, 1113, 1404, 2125
FokI	GGATG	7 cut(s)	1130, 1136, 1172, 1601, 1687, 2161, 2256
FriOI	GRGCYC	2 cut(s)	1500, 1910
Fsp4HI	GCNGC	9 cut(s)	493, 607, 696, 699, 872, 1104, 1113, 1404, 2125
FspBI	CTAG	6 cut(s)	738, 1416, 1533, 1718, 2027, 2216
FspI	TGCGCA	1 cut(s)	521
GlaI	GCGC	3 cut(s)	521, 537, 694
GluI	GCNGC	9 cut(s)	493, 607, 696, 699, 872, 1104, 1113, 1404, 2125
GsaI	CCCAGC	2 cut(s)	310, 1828
GsuI	CTGGAG	3 cut(s)	964, 1487, 2102
HaeII	RGCGCY	1 cut(s)	696
HaeIII	GGCC	6 cut(s)	417, 480, 842, 1045, 1420, 2071
HgaI	GACGC	2 cut(s)	527, 2099
HhaI	GCGC	3 cut(s)	522, 538, 695
Hin1I	GRCGYC	1 cut(s)	2056
Hin6I	GCGC	3 cut(s)	520, 536, 693
HinP1I	GCGC	3 cut(s)	520, 536, 693
HincII	GTYRAC	3 cut(s)	639, 1686, 2114
HindII	GTYRAC	3 cut(s)	639, 1686, 2114
HinfI	GANTC	6 cut(s)	486, 512, 670, 977, 1268, 1292
HphI	GGTGA	5 cut(s)	40, 161, 308, 387, 1805
Hpy188I	TCNGA	6 cut(s)	247, 1588, 1734, 1742, 1966, 2179
Hpy99I	CGWCG	1 cut(s)	2058
HpyAV	CCTTC	6 cut(s)	596, 683, 1249, 1656, 1661, 2002
HpyCH4III	ACNGT	7 cut(s)	106, 253, 586, 1153, 1761, 1832, 2035
HpyCH4IV	ACGT	1 cut(s)	2056
HpyF10VI	GCNNNNNNNGC	7 cut(s)	443, 1109, 1112, 1409, 1455, 1589, 2130
HpyF3I	CTNAG	5 cut(s)	1494, 1731, 1963, 2079, 2106
HpySE526I	ACGT	1 cut(s)	2056
Hsp92I	GRCGYC	1 cut(s)	2056
HspAI	GCGC	3 cut(s)	520, 536, 693
Ksp22I	TGATCA	2 cut(s)	135, 1626
Kzo9I	GATC	8 cut(s)	121, 135, 1482, 1626, 1650, 1670, 1819, 2090
LmnI	GCTCC	4 cut(s)	196, 868, 1702, 1905
Lsp1109I	GCAGC	9 cut(s)	504, 593, 682, 685, 883, 1090, 1099, 1390, 2136
MaeI	CTAG	6 cut(s)	738, 1416, 1533, 1718, 2027, 2216
MaeII	ACGT	1 cut(s)	2056
MaeIII	GTNAC	9 cut(s)	28, 580, 906, 920, 1231, 1599, 1793, 2029, 2035
MalI	GATC	8 cut(s)	123, 137, 1484, 1628, 1652, 1672, 1821, 2092
MboI	GATC	8 cut(s)	121, 135, 1482, 1626, 1650, 1670, 1819, 2090
MboII	GAAGA	7 cut(s)	55, 103, 116, 574, 676, 986, 2007
MfeI	CAATTG	4 cut(s)	1199, 1272, 1477, 1878
MflI	RGATCY	2 cut(s)	121, 1670
MhlI	GDGCHC	4 cut(s)	448, 1500, 1910, 2148
MlyI	GAGTC	2 cut(s)	971, 1286
MmeI	TCCRAC	1 cut(s)	698
Mph1103I	ATGCAT	2 cut(s)	271, 628
MroXI	GAANNNNTTC	2 cut(s)	1428, 1517
MseI	TTAA	7 cut(s)	18, 650, 660, 747, 758, 1073, 1287
MslI	CAYNNNNRTG	3 cut(s)	451, 1154, 2000
MspA1I	CMGCKG	2 cut(s)	1112, 2238
MspR9I	CCNGG	6 cut(s)	81, 839, 844, 945, 1058, 2064
MunI	CAATTG	4 cut(s)	1199, 1272, 1477, 1878
Mva1269I	GAATGC	4 cut(s)	466, 679, 1065, 1211
MvaI	CCWGG	6 cut(s)	81, 839, 844, 945, 1058, 2064
MvnI	CGCG	1 cut(s)	538
MwoI	GCNNNNNNNGC	7 cut(s)	443, 1109, 1112, 1409, 1455, 1589, 2130
NcoI	CCATGG	3 cut(s)	145, 1300, 1704
NdeI	CATATG	1 cut(s)	1912
NdeII	GATC	8 cut(s)	121, 135, 1482, 1626, 1650, 1670, 1819, 2090
NlaIV	GGNNCC	3 cut(s)	258, 1028, 1907
NmuCI	GTSAC	6 cut(s)	28, 580, 920, 1231, 1793, 2029
NsbI	TGCGCA	1 cut(s)	521
NsiI	ATGCAT	2 cut(s)	271, 628
NspI	RCATGY	2 cut(s)	214, 437
OliI	CACNNNNGTG	2 cut(s)	451, 1154
PaeI	GCATGC	1 cut(s)	437
PagI	TCATGA	3 cut(s)	499, 1363, 1380
PceI	AGGCCT	3 cut(s)	842, 1045, 2071
PctI	GAATGC	4 cut(s)	466, 679, 1065, 1211
PdmI	GAANNNNTTC	2 cut(s)	1428, 1517
PfeI	GAWTC	4 cut(s)	486, 512, 670, 1268
PfoI	TCCNGGA	1 cut(s)	1056
PkrI	GCNGC	9 cut(s)	494, 608, 697, 700, 873, 1105, 1114, 1405, 2126
PleI	GAGTC	2 cut(s)	971, 1286
PpsI	GAGTC	2 cut(s)	971, 1286
Psp6I	CCWGG	6 cut(s)	79, 837, 842, 943, 1056, 2062
PspFI	CCCAGC	2 cut(s)	306, 1824
PspGI	CCWGG	6 cut(s)	79, 837, 842, 943, 1056, 2062
PspN4I	GGNNCC	3 cut(s)	258, 1028, 1907
PspPI	GGNCC	3 cut(s)	416, 478, 1419
PstNI	CAGNNNCTG	2 cut(s)	251, 1169
PsuI	RGATCY	2 cut(s)	121, 1670
PvuII	CAGCTG	1 cut(s)	1112
RsaI	GTAC	4 cut(s)	71, 887, 2025, 2214
RsaNI	GTAC	4 cut(s)	70, 886, 2024, 2213
RseI	CAYNNNNRTG	3 cut(s)	451, 1154, 2000
SalI	GTCGAC	1 cut(s)	637
SaqAI	TTAA	7 cut(s)	18, 650, 660, 747, 758, 1073, 1287
SatI	GCNGC	9 cut(s)	493, 607, 696, 699, 872, 1104, 1113, 1404, 2125
Sau3AI	GATC	8 cut(s)	121, 135, 1482, 1626, 1650, 1670, 1819, 2090
Sau96I	GGNCC	3 cut(s)	416, 478, 1419
ScaI	AGTACT	2 cut(s)	71, 2025
SchI	GAGTC	2 cut(s)	971, 1286
ScrFI	CCNGG	6 cut(s)	81, 839, 844, 945, 1058, 2064
SduI	GDGCHC	4 cut(s)	448, 1500, 1910, 2148
SfcI	CTRYAG	3 cut(s)	705, 1831, 1948
SmiMI	CAYNNNNRTG	3 cut(s)	451, 1154, 2000
SmlI	CTYRAG	2 cut(s)	1657, 2019
SmoI	CTYRAG	2 cut(s)	1657, 2019
SpeI	ACTAGT	2 cut(s)	2026, 2215
SphI	GCATGC	1 cut(s)	437
SseBI	AGGCCT	3 cut(s)	842, 1045, 2071
SsiI	CCGC	3 cut(s)	1115, 1277, 2238
SspI	AATATT	1 cut(s)	1284
SspMI	CTAG	6 cut(s)	738, 1416, 1533, 1718, 2027, 2216
StuI	AGGCCT	3 cut(s)	842, 1045, 2071
StyD4I	CCNGG	6 cut(s)	79, 837, 842, 943, 1056, 2062
StyI	CCWWGG	7 cut(s)	145, 611, 783, 969, 1300, 1415, 1704
TaaI	ACNGT	7 cut(s)	106, 253, 586, 1153, 1761, 1832, 2035
TaiI	ACGT	1 cut(s)	2059
TaqI	TCGA	4 cut(s)	206, 276, 345, 638
TaqII	GACCGA	1 cut(s)	1340
TatI	WGTACW	3 cut(s)	69, 2023, 2212
TfiI	GAWTC	4 cut(s)	486, 512, 670, 1268
Tru1I	TTAA	7 cut(s)	18, 650, 660, 747, 758, 1073, 1287
Tru9I	TTAA	7 cut(s)	18, 650, 660, 747, 758, 1073, 1287
TscAI	CASTG	6 cut(s)	391, 458, 1158, 1470, 1807, 2126
TseFI	GTSAC	6 cut(s)	28, 580, 920, 1231, 1793, 2029
TseI	GCWGC	9 cut(s)	492, 606, 695, 698, 871, 1103, 1112, 1403, 2124
Tsp45I	GTSAC	6 cut(s)	28, 580, 920, 1231, 1793, 2029
TspRI	CASTG	6 cut(s)	391, 458, 1158, 1470, 1807, 2126
VneI	GTGCAC	1 cut(s)	444
XapI	RAATTY	3 cut(s)	503, 618, 1513
XceI	RCATGY	2 cut(s)	214, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XmaJI	CCTAGG	1 cut(s)	1415
XmiI	GTMKAC	2 cut(s)	638, 1992
XmnI	GAANNNNTTC	2 cut(s)	1428, 1517
XspI	CTAG	6 cut(s)	738, 1416, 1533, 1718, 2027, 2216
ZraI	GACGTC	1 cut(s)	2057
ZrmI	AGTACT	2 cut(s)	71, 2025
Zsp2I	ATGCAT	2 cut(s)	271, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.