Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004893

Physical Location & Seq

Genomic Coordinates Forward (+)

42331797 .. 42336382

Gene Structure 4586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGGAGGTGACAGAGATGTTTGGTTGTAACATCAATAACATGTCCATCAAGTACTTCCTCCCTGGCAACAAGAAGACCCTGATTACTGTTTCGAATGACAAGGATCTGAAGCGCATGATCAAATTCCATGATGATTTTGCAACAGTCGATATTTATGTCATGGAAGAAACAATTGCACCCGATGTCTCGAACATGCCTGCCAGTAGGTCAAGCAGAACAACTTTGTCAGAAACTGTGCTTCCAGTTGATGTTCCTCTGGATGTTTCAGAGTTTGTTGGTGATACCCCCCAGCCAGATCTGCCACTAGATGCCTCTCTTGATGTTCTAGATGATACCAGCCCTATCGATACACATATTGATCTACCCACTGAGATGTCACCCCTTTTCCCTTTTATTGGCCCCAATGACGACAAACATGCTAAGGGTGCACAGCAGTGGCAGAATTCCATTACGGGTGTGGGTCAAAGATTCAGTAGTGTTCATGAATTTCGTGAATCATTGCGTAAATATGCCATTGCCCATCAGTTTGCCTTTAGGTATAAGAAGAATGATAGTCATCGTGTGACTGTTAAGTGCAAGGCTGACGGCTGCCCTTGGAGAATTCATGCATCAAGGTTGTCTACGACTCAGTTAATATGTATCAAGAAGATGAATCCAACACATACATGTGAAGGGGCTGTTGCAACAACGGGGCATCAGGCAACAAGGAGTTGGGTGGCTAGTATTATTAAGGAGAAGTTAAAATACTTGCCTAATTATAAGCCCAAGGATATCGTCAATGACATCAAGCAAGAATATGGAATCCAGCTGAACTACTTTCAAGCCTGGCGTGGGAAAGAAATAGCAAAGGAGCAGCTTCAGGGTTCATACAAAGACGCATATAATCAGTTACCCCTTTTCTGTGAGAAGATAATGGAGACAAACCCAGGTAGTTTTGCTATATTTACTACTAAGGAAGACTCCAGTTTCCATCGTCTCTTTGTCTCATTCCATGCCTCATTATCTGGTTTCCAGCAAGGTTGCAGGCCTCTCCTTTTTCTTGATAGCATTCCTTTAAAGTCAAAATATCAAGGCACATTGTTGGCTGCGACTGCTGCAGATGGGGATGATGAGGTTTTCCCTGTTGCTTTCACTGTTGTGGATGCAGAAAGTGATGATAACTGGCATTGGTTTTTACTTCAGCTGAAATCCTCATTTTCAACAACGTGTCCGATAACATTTGTGGCAGACAGACAGAAGGGGCTAAGGGAATCAATTGCTGAAGTATTCAAAGACTCATACCATGGCTATTGCCTGCGATACTTGACTGAGCAACTTATCAGAGACTTGAGGGGGCAGTTTTCTCACGAGGTGAAGCGACTCATGGTTGAGGATTTCTATGCTGCTGCTTATGCACCTACTCCAGATAACTTCCAAAGGTGTCTTGAGAGCATTAAAAGTATTTCATTAGAAGCTTACAATTGGATCATACAAAGTGAGCCATACAACTGGGCGAATGCATATTTTAAGGGTGCCAGATATAACCATATGACATCAAACTTTGGAGAGCTGTTTTACAGCTGGGCATCAGATGCACACGAGTTACCAATAACTCAGATGGTTGATGTGATCAGGGGTAAGATTATGGACTCGATCTACAAAAGAAGAGCAGATTCCGATCAATGGTTGACAAGGCTAACTCCATCCATGGAGGAAAAGCTAGATAAGGAAACCCTTAAAGTCCAAAACCTCCAAGTACTACTATCAGCTGGTAGCACATTTGAGGTTCGTGGTGAATCCATTGAAGTTGTCGATTTAGATTGCTGGAATTGCAGTTGTAAAGGGTGGCAGATAACTGGTTTACCATGCTGTCATGCAATTGCTGTCATTGGTTGTACGGGTCGGAACCCATATGATTATTGTTCAAGATTCTTTACTACTGACAGCTACAGATTGACATACTCAGAGTCAATACATCCTATTCCACAAGTAGACATTCCTGTGACAAAGACTTCTTCTCAGGTAGCAGTAACGGTAAGCCCTCCTCCAACCCGCCGTCCACCTGGCCGGCCAACGACAAAAAAGTATGGATCTCAAGGAATGAATAAGCGTCAACTCCAGTGTAGCAGATGCAAGGGTCTTGGGCACAACAAATCCACTTGCAAAGAGATATTAATAGAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

721

Amino Acids

81.9

Weight (kDa)

6.69

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	150 - 214	7.8e-31	MuDR family transposase
MULE	PF10551	345 - 436	5.3e-13	MULE transposase domain
SWIM	PF04434	596 - 625	1.6e-08	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05850
fragaria_vesca	FvH4_6g08441 FvH4_6g08441 FvH4_6g08441 FvH4_6g08441 FvH4_6g08441 FvH4_6g08441 FvH4_6g08441 FvH4_6g08441
malus_domestica	MD04G1186800.v1.1 MD12G1200300.v1.1
prunus_persica	Prupe.6G305400_v2.0.a1 Prupe.6G305400_v2.0.a1 Prupe.6G305400_v2.0.a1 Prupe.6G305400_v2.0.a1
pyrus_communis	pycom04g16490
rosa_chinensis	RchiOBHm_Chr3g0458421
rosa_laevigata	RLG00000025158
rosa_roxburghii	Rroxscaffold_6G00421080
rosa_rugosa	Rorug03G0027800 Rorug03G0027900 Rorug03G0028000 Rorug03G0028100 Rorug03G0028200 Rorug03G0028300
rosa_samantha	Rh3AG087600 Rh3BG090400 Rh3CG090700 Rh3DG091300
rosa_wichuraiana	Rw3G007440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	759
AccB1I	GGYRCC	1 cut(s)	1511
AccI	GTMKAC	2 cut(s)	620, 1971
AciI	CCGC	1 cut(s)	2032
AclWI	GGATC	3 cut(s)	111, 1472, 2077
AcoI	YGGCCR	2 cut(s)	2044, 2048
AcsI	RAATTY	4 cut(s)	122, 442, 485, 600
AcuI	CTGAAG	4 cut(s)	128, 842, 1163, 1281
AdeI	CACNNNGTG	1 cut(s)	1351
AfaI	GTAC	3 cut(s)	53, 1737, 1876
AfiI	CCNNNNNNNGG	3 cut(s)	395, 831, 1662
AflIII	ACRYGT	3 cut(s)	39, 665, 1205
AgsI	TTSAA	5 cut(s)	821, 1200, 1270, 1784, 1905
AjnI	CCWGG	4 cut(s)	61, 824, 925, 2041
AleI	CACNNNNGTG	2 cut(s)	433, 1136
AluBI	AGCT	9 cut(s)	808, 856, 1183, 1454, 1549, 1560, 1699, 1748, 1926
AluI	AGCT	9 cut(s)	808, 856, 1183, 1454, 1549, 1560, 1699, 1748, 1926
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	5 cut(s)	190, 911, 980, 988, 1317
Alw44I	GTGCAC	1 cut(s)	426
AlwI	GGATC	3 cut(s)	111, 1472, 2077
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	4 cut(s)	397, 1025, 2044, 2048
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	6 cut(s)	588, 853, 1085, 1094, 1382, 1385
ApoI	RAATTY	4 cut(s)	122, 442, 485, 600
AseI	ATTAAT	1 cut(s)	2153
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	5 cut(s)	19, 290, 369, 1363, 1784
AsuII	TTCGAA	1 cut(s)	92
BaeGI	GKGCMC	2 cut(s)	430, 2127
BanI	GGYRCC	1 cut(s)	1511
BarI	GAAGNNNNNNTAC	2 cut(s)	728, 760
BauI	CACGAG	2 cut(s)	1346, 1577
BbsI	GAAGAC	2 cut(s)	80, 963
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	6 cut(s)	575, 865, 1072, 1081, 1369, 1372
BccI	CCATC	6 cut(s)	53, 528, 978, 1094, 1591, 1690
BceAI	ACGGC	2 cut(s)	601, 2019
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	4 cut(s)	63, 826, 927, 2043
BclI	TGATCA	2 cut(s)	117, 1608
BcoDI	GTCTC	5 cut(s)	190, 911, 980, 988, 1317
BfaI	CTAG	4 cut(s)	305, 326, 720, 1700
BfmI	CTRYAG	2 cut(s)	1095, 1927
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	6 cut(s)	589, 854, 1086, 1095, 1383, 1386
BlsI	GCNGC	6 cut(s)	590, 855, 1087, 1096, 1384, 1387
BmcAI	AGTACT	2 cut(s)	53, 1737
Bme1390I	CCNGG	4 cut(s)	63, 826, 927, 2043
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	3 cut(s)	400, 1513, 1886
BmrFI	CCNGG	4 cut(s)	63, 826, 927, 2043
BmrI	ACTGGG	1 cut(s)	1498
BmsI	GCATC	7 cut(s)	298, 617, 703, 1132, 1561, 1574, 2099
BmuI	ACTGGG	1 cut(s)	1498
BpiI	GAAGAC	2 cut(s)	80, 963
BpmI	CTGGAG	3 cut(s)	946, 1386, 2081
Bpu10I	CCTNAGC	2 cut(s)	420, 1244
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	3 cut(s)	1348, 1445, 2058
Bsa29I	ATCGAT	1 cut(s)	345
BsaBI	GATNNNNATC	2 cut(s)	555, 1656
BsaJI	CCNNGG	6 cut(s)	61, 593, 765, 925, 1282, 1686
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 831, 1662
Bse118I	RCCGGY	1 cut(s)	2046
Bse1I	ACTGG	7 cut(s)	201, 242, 963, 1166, 1493, 1840, 2098
Bse3DI	GCAATG	2 cut(s)	497, 513
Bse8I	GATNNNNATC	2 cut(s)	555, 1656
BseBI	CCWGG	4 cut(s)	63, 826, 927, 2043
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	6 cut(s)	61, 593, 765, 925, 1282, 1686
BseGI	GGATG	5 cut(s)	265, 1111, 1147, 1682, 1954
BseJI	GATNNNNATC	2 cut(s)	555, 1656
BseLI	CCNNNNNNNGG	3 cut(s)	395, 831, 1662
BseMI	GCAATG	2 cut(s)	497, 513
BseMII	CTCAG	6 cut(s)	360, 641, 1299, 1607, 1956, 2012
BseNI	ACTGG	7 cut(s)	201, 242, 963, 1166, 1493, 1840, 2098
BseRI	GAGGAG	1 cut(s)	2013
BseSI	GKGCMC	2 cut(s)	430, 2127
BseXI	GCAGC	6 cut(s)	575, 865, 1072, 1081, 1369, 1372
BseYI	CCCAGC	2 cut(s)	288, 1560
BshFI	GGCC	4 cut(s)	399, 1027, 2046, 2050
BshNI	GGYRCC	1 cut(s)	1511
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	2047
BslI	CCNNNNNNNGG	3 cut(s)	395, 831, 1662
BsmAI	GTCTC	5 cut(s)	190, 911, 980, 988, 1317
BsmBI	CGTCTC	1 cut(s)	980
BsmI	GAATGC	2 cut(s)	1047, 1501
BsnI	GGCC	4 cut(s)	399, 1027, 2046, 2050
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	430, 2127
Bsp143I	GATC	9 cut(s)	103, 117, 295, 358, 1464, 1608, 1632, 1657, 2069
Bsp19I	CCATGG	2 cut(s)	1282, 1686
BspACI	CCGC	1 cut(s)	2032
BspANI	GGCC	4 cut(s)	399, 1027, 2046, 2050
BspCNI	CTCAG	6 cut(s)	361, 640, 1300, 1606, 1955, 2011
BspDI	ATCGAT	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	3 cut(s)	400, 1513, 1886
BspMAI	CTGCAG	1 cut(s)	1099
BspPI	GGATC	3 cut(s)	111, 1472, 2077
BspQI	GCTCTTC	1 cut(s)	1639
BspT104I	TTCGAA	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	1511
BsrDI	GCAATG	2 cut(s)	497, 513
BsrFI	RCCGGY	1 cut(s)	2046
BsrI	ACTGG	7 cut(s)	201, 242, 963, 1166, 1493, 1840, 2098
BssAI	RCCGGY	1 cut(s)	2046
BssECI	CCNNGG	6 cut(s)	61, 593, 765, 925, 1282, 1686
BssMI	GATC	9 cut(s)	103, 117, 295, 358, 1464, 1608, 1632, 1657, 2069
BssSI	CACGAG	2 cut(s)	1346, 1577
BssT1I	CCWWGG	4 cut(s)	593, 765, 1282, 1686
Bst2BI	CACGAG	2 cut(s)	1346, 1577
Bst2UI	CCWGG	4 cut(s)	63, 826, 927, 2043
Bst4CI	ACNGT	6 cut(s)	88, 145, 235, 568, 1135, 2014
Bst6I	CTCTTC	1 cut(s)	1639
BstAPI	GCANNNNNTGC	1 cut(s)	1571
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	4 cut(s)	198, 1025, 1295, 2048
BstDEI	CTNAG	9 cut(s)	369, 420, 627, 951, 1244, 1308, 1593, 1942, 1998
BstDSI	CCRYGG	2 cut(s)	1282, 1686
BstF5I	GGATG	5 cut(s)	265, 1111, 1147, 1682, 1954
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	9 cut(s)	106, 120, 298, 361, 1467, 1611, 1635, 1660, 2072
BstMAI	GTCTC	5 cut(s)	190, 911, 980, 988, 1317
BstMBI	GATC	9 cut(s)	103, 117, 295, 358, 1464, 1608, 1632, 1657, 2069
BstMWI	GCNNNNNNNGC	7 cut(s)	298, 425, 1091, 1094, 1391, 1571, 1809
BstNI	CCWGG	4 cut(s)	63, 826, 927, 2043
BstNSI	RCATGY	4 cut(s)	43, 196, 419, 669
BstSCI	CCNGG	4 cut(s)	61, 824, 925, 2041
BstSFI	CTRYAG	2 cut(s)	1095, 1927
BstSLI	GKGCMC	2 cut(s)	430, 2127
BstV1I	GCAGC	6 cut(s)	575, 865, 1072, 1081, 1369, 1372
BstV2I	GAAGAC	2 cut(s)	80, 963
BstX2I	RGATCY	3 cut(s)	103, 295, 2069
BstXI	CCANNNNNNTGG	1 cut(s)	1488
BstYI	RGATCY	3 cut(s)	103, 295, 2069
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	399, 1027, 2046, 2050
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	2 cut(s)	1282, 1686
BtsCI	GGATG	5 cut(s)	265, 1111, 1147, 1682, 1954
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	4 cut(s)	366, 440, 1131, 2105
Cac8I	GCNNGC	4 cut(s)	198, 1025, 1295, 2048
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	2046
Cfr13I	GGNCC	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	345
CseI	GACGC	2 cut(s)	884, 2078
Csp6I	GTAC	3 cut(s)	52, 1736, 1875
CviQI	GTAC	3 cut(s)	52, 1736, 1875
DdeI	CTNAG	9 cut(s)	369, 420, 627, 951, 1244, 1308, 1593, 1942, 1998
DpnI	GATC	9 cut(s)	105, 119, 297, 360, 1466, 1610, 1634, 1659, 2071
DpnII	GATC	9 cut(s)	103, 117, 295, 358, 1464, 1608, 1632, 1657, 2069
DraI	TTTAAA	1 cut(s)	1056
DraIII	CACNNNGTG	1 cut(s)	1351
EaeI	YGGCCR	2 cut(s)	2044, 2048
Eam1104I	CTCTTC	1 cut(s)	1639
EarI	CTCTTC	1 cut(s)	1639
Eco130I	CCWWGG	4 cut(s)	593, 765, 1282, 1686
Eco147I	AGGCCT	1 cut(s)	1027
Eco32I	GATATC	1 cut(s)	772
Eco57I	CTGAAG	4 cut(s)	128, 842, 1163, 1281
EcoRI	GAATTC	2 cut(s)	442, 600
EcoRII	CCWGG	4 cut(s)	61, 824, 925, 2041
EcoRV	GATATC	1 cut(s)	772
EcoT14I	CCWWGG	4 cut(s)	593, 765, 1282, 1686
EcoT22I	ATGCAT	2 cut(s)	610, 1501
ErhI	CCWWGG	4 cut(s)	593, 765, 1282, 1686
Esp3I	CGTCTC	1 cut(s)	980
FauI	CCCGC	1 cut(s)	2039
FauNDI	CATATG	2 cut(s)	1527, 1891
FbaI	TGATCA	2 cut(s)	117, 1608
FblI	GTMKAC	2 cut(s)	620, 1971
Fnu4HI	GCNGC	6 cut(s)	589, 854, 1086, 1095, 1383, 1386
FokI	GGATG	5 cut(s)	272, 1118, 1154, 1669, 1941
FseI	GGCCGGCC	1 cut(s)	2050
Fsp4HI	GCNGC	6 cut(s)	589, 854, 1086, 1095, 1383, 1386
FspBI	CTAG	4 cut(s)	305, 326, 720, 1700
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	6 cut(s)	589, 854, 1086, 1095, 1383, 1386
GsaI	CCCAGC	2 cut(s)	292, 1564
GsuI	CTGGAG	3 cut(s)	946, 1386, 2081
HaeIII	GGCC	4 cut(s)	399, 1027, 2046, 2050
HapII	CCGG	1 cut(s)	2047
HgaI	GACGC	2 cut(s)	884, 2078
HhaI	GCGC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	1668, 2093
HindII	GTYRAC	2 cut(s)	1668, 2093
HindIII	AAGCTT	1 cut(s)	1452
HpaII	CCGG	1 cut(s)	2047
HphI	GGTGA	5 cut(s)	19, 290, 369, 1363, 1784
Hpy166II	GTNNAC	7 cut(s)	428, 621, 1668, 1841, 1972, 2039, 2093
Hpy8I	GTNNAC	7 cut(s)	428, 621, 1668, 1841, 1972, 2039, 2093
HpyAV	CCTTC	2 cut(s)	665, 1231
HpyCH4III	ACNGT	6 cut(s)	88, 145, 235, 568, 1135, 2014
HpyCH4IV	ACGT	1 cut(s)	1205
HpyF10VI	GCNNNNNNNGC	7 cut(s)	298, 425, 1091, 1094, 1391, 1571, 1809
HpyF3I	CTNAG	9 cut(s)	369, 420, 627, 951, 1244, 1308, 1593, 1942, 1998
HpySE526I	ACGT	1 cut(s)	1205
HspAI	GCGC	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	2046
KroNI	GCCGGC	1 cut(s)	2048
Ksp22I	TGATCA	2 cut(s)	117, 1608
Kzo9I	GATC	9 cut(s)	103, 117, 295, 358, 1464, 1608, 1632, 1657, 2069
LguI	GCTCTTC	1 cut(s)	1639
LmnI	GCTCC	1 cut(s)	850
Lsp1109I	GCAGC	6 cut(s)	575, 865, 1072, 1081, 1369, 1372
LweI	GCATC	7 cut(s)	298, 617, 703, 1132, 1561, 1574, 2099
MaeI	CTAG	4 cut(s)	305, 326, 720, 1700
MaeII	ACGT	1 cut(s)	1205
MaeIII	GTNAC	8 cut(s)	7, 26, 375, 562, 888, 1581, 1981, 2008
MalI	GATC	9 cut(s)	105, 119, 297, 360, 1466, 1610, 1634, 1659, 2071
MboI	GATC	9 cut(s)	103, 117, 295, 358, 1464, 1608, 1632, 1657, 2069
MboII	GAAGA	8 cut(s)	85, 176, 556, 658, 919, 968, 1656, 1986
MfeI	CAATTG	4 cut(s)	171, 1254, 1459, 1857
MflI	RGATCY	3 cut(s)	103, 295, 2069
MhlI	GDGCHC	2 cut(s)	430, 2127
MlyI	GAGTC	6 cut(s)	619, 953, 1268, 1353, 1622, 1955
MmeI	TCCRAC	3 cut(s)	680, 1862, 2051
Mph1103I	ATGCAT	2 cut(s)	610, 1501
MroNI	GCCGGC	1 cut(s)	2046
MseI	TTAA	9 cut(s)	570, 632, 729, 740, 1055, 1434, 1506, 1716, 2153
MslI	CAYNNNNRTG	6 cut(s)	371, 433, 664, 666, 1136, 1979
MspA1I	CMGCKG	4 cut(s)	808, 1183, 1560, 1748
MspI	CCGG	1 cut(s)	2047
MspR9I	CCNGG	4 cut(s)	63, 826, 927, 2043
MunI	CAATTG	4 cut(s)	171, 1254, 1459, 1857
Mva1269I	GAATGC	2 cut(s)	1047, 1501
MvaI	CCWGG	4 cut(s)	63, 826, 927, 2043
MwoI	GCNNNNNNNGC	7 cut(s)	298, 425, 1091, 1094, 1391, 1571, 1809
NaeI	GCCGGC	1 cut(s)	2048
NcoI	CCATGG	2 cut(s)	1282, 1686
NdeI	CATATG	2 cut(s)	1527, 1891
NdeII	GATC	9 cut(s)	103, 117, 295, 358, 1464, 1608, 1632, 1657, 2069
NgoMIV	GCCGGC	1 cut(s)	2046
NlaIV	GGNNCC	3 cut(s)	400, 1513, 1886
NmuCI	GTSAC	4 cut(s)	7, 375, 562, 1981
NsiI	ATGCAT	2 cut(s)	610, 1501
NspI	RCATGY	4 cut(s)	43, 196, 419, 669
NspV	TTCGAA	1 cut(s)	92
OliI	CACNNNNGTG	2 cut(s)	433, 1136
PagI	TCATGA	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	1027
PciI	ACATGT	2 cut(s)	39, 665
PciSI	GCTCTTC	1 cut(s)	1639
PctI	GAATGC	2 cut(s)	1047, 1501
PdiI	GCCGGC	1 cut(s)	2048
PfeI	GAWTC	8 cut(s)	468, 494, 652, 801, 1250, 1652, 1775, 1908
PkrI	GCNGC	6 cut(s)	590, 855, 1087, 1096, 1384, 1387
PleI	GAGTC	6 cut(s)	619, 953, 1268, 1353, 1622, 1954
PpsI	GAGTC	6 cut(s)	619, 953, 1268, 1353, 1622, 1954
PscI	ACATGT	2 cut(s)	39, 665
PshBI	ATTAAT	1 cut(s)	2153
PsiI	TTATAA	1 cut(s)	759
Psp6I	CCWGG	4 cut(s)	61, 824, 925, 2041
PspFI	CCCAGC	2 cut(s)	288, 1560
PspGI	CCWGG	4 cut(s)	61, 824, 925, 2041
PspN4I	GGNNCC	3 cut(s)	400, 1513, 1886
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	1099
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	3 cut(s)	103, 295, 2069
PvuII	CAGCTG	4 cut(s)	808, 1183, 1560, 1748
RigI	GGCCGGCC	1 cut(s)	2050
RsaI	GTAC	3 cut(s)	53, 1737, 1876
RsaNI	GTAC	3 cut(s)	52, 1736, 1875
RseI	CAYNNNNRTG	6 cut(s)	371, 433, 664, 666, 1136, 1979
SapI	GCTCTTC	1 cut(s)	1639
SaqAI	TTAA	9 cut(s)	570, 632, 729, 740, 1055, 1434, 1506, 1716, 2153
SatI	GCNGC	6 cut(s)	589, 854, 1086, 1095, 1383, 1386
Sau3AI	GATC	9 cut(s)	103, 117, 295, 358, 1464, 1608, 1632, 1657, 2069
Sau96I	GGNCC	1 cut(s)	398
ScaI	AGTACT	2 cut(s)	53, 1737
SchI	GAGTC	6 cut(s)	619, 953, 1268, 1353, 1622, 1955
ScrFI	CCNGG	4 cut(s)	63, 826, 927, 2043
SduI	GDGCHC	2 cut(s)	430, 2127
SfaNI	GCATC	7 cut(s)	298, 617, 703, 1132, 1561, 1574, 2099
SfcI	CTRYAG	2 cut(s)	1095, 1927
SfuI	TTCGAA	1 cut(s)	92
SmiMI	CAYNNNNRTG	6 cut(s)	371, 433, 664, 666, 1136, 1979
SmlI	CTYRAG	3 cut(s)	1327, 1424, 2073
SmoI	CTYRAG	3 cut(s)	1327, 1424, 2073
SseBI	AGGCCT	1 cut(s)	1027
SsiI	CCGC	1 cut(s)	2032
SspMI	CTAG	4 cut(s)	305, 326, 720, 1700
StuI	AGGCCT	1 cut(s)	1027
StyD4I	CCNGG	4 cut(s)	61, 824, 925, 2041
StyI	CCWWGG	4 cut(s)	593, 765, 1282, 1686
TaaI	ACNGT	6 cut(s)	88, 145, 235, 568, 1135, 2014
TaiI	ACGT	1 cut(s)	1208
TaqI	TCGA	6 cut(s)	92, 147, 188, 345, 1631, 1791
TatI	WGTACW	2 cut(s)	51, 1735
TfiI	GAWTC	8 cut(s)	468, 494, 652, 801, 1250, 1652, 1775, 1908
Tru1I	TTAA	9 cut(s)	570, 632, 729, 740, 1055, 1434, 1506, 1716, 2153
Tru9I	TTAA	9 cut(s)	570, 632, 729, 740, 1055, 1434, 1506, 1716, 2153
TscAI	CASTG	4 cut(s)	373, 440, 1138, 2105
TseFI	GTSAC	4 cut(s)	7, 375, 562, 1981
TseI	GCWGC	6 cut(s)	588, 853, 1085, 1094, 1382, 1385
Tsp45I	GTSAC	4 cut(s)	7, 375, 562, 1981
TspDTI	ATGAA	7 cut(s)	470, 498, 593, 665, 855, 1434, 2096
TspRI	CASTG	4 cut(s)	373, 440, 1138, 2105
VneI	GTGCAC	1 cut(s)	426
VspI	ATTAAT	1 cut(s)	2153
XapI	RAATTY	4 cut(s)	122, 442, 485, 600
XbaI	TCTAGA	1 cut(s)	325
XceI	RCATGY	4 cut(s)	43, 196, 419, 669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
XmiI	GTMKAC	2 cut(s)	620, 1971
XspI	CTAG	4 cut(s)	305, 326, 720, 1700
ZrmI	AGTACT	2 cut(s)	53, 1737
Zsp2I	ATGCAT	2 cut(s)	610, 1501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.