Rorug03G0028300

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004893
Physical Location & Seq
Reverse (-)
2246839 .. 2247444
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0028300.1

Sequence Viewer

Length: 255 bp
ATGGCCGGGAAGATTGTCTTGTTACTTATCTTCTGTGCAATAGTGGGAAGTGCTTCTGCTACTTCTAATGTGAGAGCCACATACCACCTCTACAATCCGCAAGATAACAACTGGGACTTGCTTGCAGTAGGAGCCTTCTGCGCAACATTTGATGCCAATCAGCCCTTCGAATGGCGCAGCAGGTATGGATGGACCGCCTTCTGCGGACCTGAAGGCCCTAGCGGAGCAGAGGCCTGCGGAAAATGCCTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

84

Amino Acids

9.05

Weight (kDa)

5.56

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 21 - 83 2.3e-27 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 142
Acc36I ACCTGC 1 cut(s) 171
AciI CCGC 5 cut(s) 98, 195, 204, 222, 237
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 171
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AoxI GGCC 3 cut(s) 3, 214, 231
ApeKI GCWGC 1 cut(s) 177
Asp700I GAANNNNTTC 1 cut(s) 52
AspLEI GCGC 2 cut(s) 143, 177
AspS9I GGNCC 3 cut(s) 192, 206, 215
AsuC2I CCSGG 1 cut(s) 7
AsuII TTCGAA 1 cut(s) 168
AvaII GGWCC 2 cut(s) 192, 206
BbvI GCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 183
BcnI CCSGG 1 cut(s) 7
BfaI CTAG 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 171
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 192, 206
BmgT120I GGNCC 3 cut(s) 192, 206, 215
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 156
BseGI GGATG 1 cut(s) 194
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 189
BshFI GGCC 3 cut(s) 5, 216, 233
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 3 cut(s) 5, 216, 233
Bsp119I TTCGAA 1 cut(s) 168
BspACI CCGC 5 cut(s) 98, 195, 204, 222, 237
BspANI GGCC 3 cut(s) 5, 216, 233
BspLI GGNNCC 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 168
BsrI ACTGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 123, 235
BstF5I GGATG 1 cut(s) 194
BstHHI GCGC 2 cut(s) 143, 177
BstMWI GCNNNNNNNGC 3 cut(s) 131, 140, 243
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 1 cut(s) 189
BsuRI GGCC 3 cut(s) 5, 216, 233
BtsCI GGATG 1 cut(s) 194
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 123, 235
CfoI GCGC 2 cut(s) 143, 177
Cfr13I GGNCC 3 cut(s) 192, 206, 215
CviJI RGCY 6 cut(s) 5, 77, 134, 163, 216, 233
CviKI_1 RGCY 6 cut(s) 5, 77, 134, 163, 216, 233
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 233
Eco47I GGWCC 2 cut(s) 192, 206
Eco57I CTGAAG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 215
FaiI YATR 2 cut(s) 82, 186
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 219
FspI TGCGCA 1 cut(s) 142
GlaI GCGC 2 cut(s) 142, 176
GluI GCNGC 1 cut(s) 178
HaeIII GGCC 3 cut(s) 5, 216, 233
HapII CCGG 1 cut(s) 6
HhaI GCGC 2 cut(s) 143, 177
Hin6I GCGC 2 cut(s) 141, 175
HinP1I GCGC 2 cut(s) 141, 175
HpaII CCGG 1 cut(s) 6
HpyAV CCTTC 4 cut(s) 145, 175, 206, 208
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 38, 125
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 140, 243
HspAI GCGC 2 cut(s) 141, 175
LmnI GCTCC 2 cut(s) 131, 224
LpnPI CCDG 5 cut(s) 19, 97, 166, 222, 247
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 21
MboII GAAGA 2 cut(s) 22, 22
MnlI CCTC 2 cut(s) 98, 223
MroXI GAANNNNTTC 1 cut(s) 52
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 131, 140, 243
NciI CCSGG 1 cut(s) 7
NlaIV GGNNCC 1 cut(s) 133
NsbI TGCGCA 1 cut(s) 142
NspV TTCGAA 1 cut(s) 168
PceI AGGCCT 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 3 cut(s) 192, 206, 215
SatI GCNGC 1 cut(s) 178
Sau96I GGNCC 3 cut(s) 192, 206, 215
ScrFI CCNGG 1 cut(s) 7
SetI ASST 3 cut(s) 90, 185, 211
SfaNI GCATC 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 2 cut(s) 192, 206
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 5 cut(s) 98, 195, 204, 222, 237
SspMI CTAG 1 cut(s) 219
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 168
TseI GCWGC 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 192, 206
XmnI GAANNNNTTC 1 cut(s) 52
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.