Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008336

Physical Location & Seq

Genomic Coordinates Forward (+)

30195569 .. 30196180

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1226200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGATTTCGTGGAACTGGAGGCGATCGAGGGCCTCCGATGGTCCTGGAATTCATGGCCGCCGTCAAAATCCGAGTGCGCCGCCCTCGTTATCCCTCTCAGCGTCATGTGCACGCCGTTGATGCAACAAGCCGAGCTGCCGATACTCCCCTACGACCCCGTCACTTGCCTCCGATGCCGCGCCGTTTTGAACCCCTACGCCCGCGTCGAGTACCCTTCTCGCATCTGGTTCTGCTCCTTCTGCCACCACAAGAACTCCTTCCCTCACTCTTACTCCAACATCGGCGAGACCAACCTCCCCGCCGAGCTTTTTCCGACTTACAGCGCCGTCGAAATTGGGCAAATGGGTTGTCGTCATCGTCGTCCCTGTCGTCTATGGTGTCGTCGGCGGCAGCGTCATCGGTGTCGAATGGGGATTCGAGAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001501 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006900 GO:0006996 GO:0007275 GO:0008150 GO:0008270 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022607 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0034622 GO:0035107 GO:0035138 GO:0035459 GO:0043009 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046907 GO:0046914 GO:0048193 GO:0048194 GO:0048475 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048731 GO:0048736 GO:0048856 GO:0051179 GO:0051216 GO:0051234 GO:0051641 GO:0051649 GO:0051668 GO:0061024 GO:0061448 GO:0065003 GO:0070971 GO:0071840 GO:0090110 GO:0090114 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1904888

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

143

Amino Acids

16.61

Weight (kDa)

8.91

Isoelectric Point (pI)

73.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Sec23_Sec24	PF04810	53 - 91	6.6e-14	Sec23/Sec24 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43670
fragaria_vesca	FvH4_3g28910 FvH4_3g28910 FvH4_3g28910
malus_domestica	MD04G1211400.v1.1 MD12G1226200.v1.1
prunus_persica	Prupe.1G027900_v2.0.a1
pyrus_communis	pycom04g01860 pycom04g18730 pycom04g18740 pycom12g21060 pycom12g21090
rosa_chinensis	RchiOBHm_Chr5g0051941
rosa_laevigata	RLG00000034852
rosa_multiflora	Rmu_co8514153.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027500
rosa_rugosa	Rorug05G0276200 Rorug05G0276300
rosa_samantha	Rh5AG348200 Rh5BG358800 Rh5CG384400 Rh5DG374200
rosa_wichuraiana	Rw5G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	180, 204
AciI	CCGC	6 cut(s)	59, 81, 178, 202, 300, 388
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	49
AfaI	GTAC	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	136, 307
AluI	AGCT	2 cut(s)	136, 307
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	281
Alw44I	GTGCAC	1 cut(s)	109
AoxI	GGCC	2 cut(s)	31, 56
ApaLI	GTGCAC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	136, 391
ApoI	RAATTY	1 cut(s)	49
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	3 cut(s)	80, 182, 326
AspS9I	GGNCC	2 cut(s)	31, 42
AvaII	GGWCC	1 cut(s)	42
BaeGI	GKGCMC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	123, 403
BccI	CCATC	1 cut(s)	33
BceAI	ACGGC	4 cut(s)	46, 100, 167, 311
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	6 cut(s)	59, 81, 137, 178, 389, 392
BlsI	GCNGC	6 cut(s)	60, 82, 138, 179, 390, 393
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	31, 42
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	3 cut(s)	111, 164, 231
BpmI	CTGGAG	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	281
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 257, 269, 287
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	123, 403
Bsh1236I	CGCG	2 cut(s)	180, 204
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	33, 58
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	33, 58
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	6 cut(s)	59, 81, 178, 202, 300, 388
BspANI	GGCC	2 cut(s)	33, 58
BspCNI	CTCAG	1 cut(s)	111
BspFNI	CGCG	2 cut(s)	180, 204
BspTNI	GGTCTC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	113, 202
BstDEI	CTNAG	1 cut(s)	98
BstFNI	CGCG	2 cut(s)	180, 204
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	3 cut(s)	80, 182, 326
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	24
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 121, 174, 240
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	113
BstUI	CGCG	2 cut(s)	180, 204
BstV1I	GCAGC	2 cut(s)	123, 403
BsuRI	GGCC	2 cut(s)	33, 58
Cac8I	GCNNGC	2 cut(s)	113, 202
CfoI	GCGC	3 cut(s)	80, 182, 326
Cfr13I	GGNCC	2 cut(s)	31, 42
CseI	GACGC	3 cut(s)	91, 193, 383
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	54, 106
CviJI	RGCY	5 cut(s)	33, 58, 131, 136, 307
CviKI_1	RGCY	5 cut(s)	33, 58, 131, 136, 307
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	2 cut(s)	57, 109
FaiI	YATR	3 cut(s)	55, 107, 376
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	2 cut(s)	53, 105
FauI	CCCGC	2 cut(s)	209, 307
Fnu4HI	GCNGC	6 cut(s)	59, 81, 137, 178, 389, 392
Fsp4HI	GCNGC	6 cut(s)	59, 81, 137, 178, 389, 392
GlaI	GCGC	3 cut(s)	79, 181, 325
GluI	GCNGC	6 cut(s)	59, 81, 137, 178, 389, 392
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	33, 58
HgaI	GACGC	3 cut(s)	91, 193, 383
HhaI	GCGC	3 cut(s)	80, 182, 326
Hin1II	CATG	2 cut(s)	57, 109
Hin6I	GCGC	3 cut(s)	78, 180, 324
HinP1I	GCGC	3 cut(s)	78, 180, 324
HinfI	GANTC	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	4 cut(s)	38, 73, 173, 315
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	4 cut(s)	209, 332, 363, 387
HpyAV	CCTTC	3 cut(s)	225, 247, 268
HpyCH4V	TGCA	2 cut(s)	111, 124
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 121, 174, 240
HpyF3I	CTNAG	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	57, 109
HspAI	GCGC	3 cut(s)	78, 180, 324
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	5 cut(s)	2, 31, 58, 211, 379
Lsp1109I	GCAGC	2 cut(s)	123, 403
LweI	GCATC	3 cut(s)	111, 164, 231
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	2 cut(s)	49, 333
MmeI	TCCRAC	2 cut(s)	300, 338
MnlI	CCTC	9 cut(s)	13, 22, 44, 95, 105, 179, 273, 305, 415
MroXI	GAANNNNTTC	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	2 cut(s)	180, 204
MwoI	GCNNNNNNNGC	4 cut(s)	108, 121, 174, 240
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	2 cut(s)	57, 109
NmeAIII	GCCGAG	2 cut(s)	157, 328
NmuCI	GTSAC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	4 cut(s)	204, 358, 367, 391
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	415
PflFI	GACNNNGTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	44
PkrI	GCNGC	6 cut(s)	60, 82, 138, 179, 390, 393
Ple19I	CGATCG	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	31, 42
PsyI	GACNNNGTC	1 cut(s)	158
PvuI	CGATCG	1 cut(s)	27
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SatI	GCNGC	6 cut(s)	59, 81, 137, 178, 389, 392
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	2 cut(s)	31, 42
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	3 cut(s)	138, 297, 309
SfaNI	GCATC	3 cut(s)	111, 164, 231
SinI	GGWCC	1 cut(s)	42
Sse9I	AATT	2 cut(s)	49, 333
SsiI	CCGC	6 cut(s)	59, 81, 178, 202, 300, 388
StyD4I	CCNGG	1 cut(s)	44
TaqI	TCGA	5 cut(s)	27, 207, 330, 406, 418
TasI	AATT	2 cut(s)	49, 333
TauI	GCSGC	4 cut(s)	61, 83, 180, 391
TfiI	GAWTC	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	136, 391
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	42
Tth111I	GACNNNGTC	1 cut(s)	158
VneI	GTGCAC	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	42
XapI	RAATTY	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.