pycom04g01860

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0008336
Physical Location & Seq
Forward (+)
1679967 .. 1681037
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g01860.4

Sequence Viewer

Length: 549 bp
ATGTTTAACCTCCGACGCTCACAATTTGTGCAGGTTTTCAACAACAGCCCAGATGAAACAGCATATTTTCGCATGTTGTTAAATCGGGAAAATATCAGCAATGCTGCTGTCATGATACAACCATCATTAATATCATATTCATTTAATTCGCTGCCTCAGCCAGCATTGTTGGATGTGGCATCCATTGCAGCTGACCGTATTCTGTTGTTGGATTCATATTTTAGTATAGTCATTTTCCATGGAATGACAATAGCACAGTGGCGTAACATGGGATACCAGAATCAGCCAGAACACCAGGCATTTGCACAACTACTGCAAGCTCCCCAAGATGATACACAATTGATTGTTAGGGACCGTTTCCCTGTCCCTAGATTGGTGGTGTGCGATCAGCATGGCTCCCAGGCAAGGTTCTTGTTAGCAAAGTTGAACCCGTCAGCAACATACAACAATGCGCATGAAATGGCTGCCGGTTCAGATGTTATCTTCACAGATGATGTAAGCCTTCAAGTTTTCTTTGAGCATCTTCAGAGGCTGGCAGTGCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

183

Amino Acids

20.69

Weight (kDa)

5.63

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 453
Acc36I ACCTGC 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 509
AfiI CCNNNNNNNGG 2 cut(s) 373, 405
AgsI TTSAA 3 cut(s) 40, 427, 506
AjnI CCWGG 2 cut(s) 294, 399
AluBI AGCT 2 cut(s) 191, 320
AluI AGCT 2 cut(s) 191, 320
AlwNI CAGNNNCTG 1 cut(s) 532
ApeKI GCWGC 4 cut(s) 104, 151, 188, 464
AseI ATTAAT 1 cut(s) 128
AspLEI GCGC 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 352
AvaII GGWCC 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 156
BbvI GCAGC 4 cut(s) 91, 138, 200, 451
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 2 cut(s) 296, 401
BciVI GTATCC 1 cut(s) 266
BfaI CTAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 22
BfuI GTATCC 1 cut(s) 266
BisI GCNGC 4 cut(s) 105, 152, 189, 465
BlsI GCNGC 4 cut(s) 106, 153, 190, 466
Bme1390I CCNGG 2 cut(s) 296, 401
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 353, 397
BmrFI CCNGG 2 cut(s) 296, 401
BmsI GCATC 2 cut(s) 188, 529
Bpu10I CCTNAGC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 238, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 405
Bse118I RCCGGY 1 cut(s) 467
Bse3DI GCAATG 2 cut(s) 106, 183
BseBI CCWGG 2 cut(s) 296, 401
BseDI CCNNGG 2 cut(s) 238, 399
BseGI GGATG 2 cut(s) 178, 179
BseLI CCNNNNNNNGG 2 cut(s) 373, 405
BseMI GCAATG 2 cut(s) 106, 183
BseMII CTCAG 1 cut(s) 170
BseXI GCAGC 4 cut(s) 91, 138, 200, 451
BsgI GTGCAG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 2 cut(s) 350, 365
BslI CCNNNNNNNGG 2 cut(s) 373, 405
BsmFI GGGAC 2 cut(s) 350, 365
Bsp143I GATC 1 cut(s) 385
Bsp19I CCATGG 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 353, 397
BspMI ACCTGC 1 cut(s) 22
BsrDI GCAATG 2 cut(s) 106, 183
BsrFI RCCGGY 1 cut(s) 467
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 2 cut(s) 238, 399
BssMI GATC 1 cut(s) 385
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 2 cut(s) 296, 401
Bst4CI ACNGT 3 cut(s) 197, 258, 356
BstAPI GCANNNNNTGC 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 162, 318, 534
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 2 cut(s) 178, 179
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 1 cut(s) 388
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 3 cut(s) 157, 185, 538
BstNI CCWGG 2 cut(s) 296, 401
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 294, 399
BstV1I GCAGC 4 cut(s) 91, 138, 200, 451
BsuI GTATCC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 2 cut(s) 178, 179
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 263, 543
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 162, 318, 534
CaiI CAGNNNCTG 1 cut(s) 532
CciI TCATGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 352
CseI GACGC 1 cut(s) 24
CviAII CATG 6 cut(s) 73, 112, 239, 268, 392, 455
CviJI RGCY 9 cut(s) 48, 160, 191, 286, 320, 396, 464, 501, 532
CviKI_1 RGCY 9 cut(s) 48, 160, 191, 286, 320, 396, 464, 501, 532
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 509
EcoRII CCWGG 2 cut(s) 294, 399
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 6 cut(s) 76, 115, 242, 271, 395, 458
FaqI GGGAC 2 cut(s) 350, 365
FatI CATG 6 cut(s) 72, 111, 238, 267, 391, 454
Fnu4HI GCNGC 4 cut(s) 105, 152, 189, 465
FokI GGATG 2 cut(s) 166, 185
Fsp4HI GCNGC 4 cut(s) 105, 152, 189, 465
FspAI RTGCGCAY 1 cut(s) 453
FspBI CTAG 1 cut(s) 369
FspI TGCGCA 1 cut(s) 453
GlaI GCGC 1 cut(s) 453
GluI GCNGC 4 cut(s) 105, 152, 189, 465
HapII CCGG 1 cut(s) 468
HgaI GACGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 454
Hin1II CATG 6 cut(s) 76, 115, 242, 271, 395, 458
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HinfI GANTC 2 cut(s) 212, 280
HpaII CCGG 1 cut(s) 468
Hpy188I TCNGA 3 cut(s) 14, 475, 528
Hpy188III TCNNGA 3 cut(s) 86, 112, 546
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 512
HpyCH4III ACNGT 3 cut(s) 197, 258, 356
HpyCH4V TGCA 5 cut(s) 31, 188, 305, 316, 541
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 185, 538
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 6 cut(s) 76, 115, 242, 271, 395, 458
HspAI GCGC 1 cut(s) 452
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 2 cut(s) 325, 401
Lsp1109I GCAGC 4 cut(s) 91, 138, 200, 451
LweI GCATC 2 cut(s) 188, 529
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MboII GAAGA 2 cut(s) 475, 515
MfeI CAATTG 1 cut(s) 338
MluCI AATT 3 cut(s) 23, 145, 338
MmeI TCCRAC 3 cut(s) 37, 150, 189
MnlI CCTC 3 cut(s) 20, 165, 522
MseI TTAA 4 cut(s) 6, 80, 128, 144
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 296, 401
MunI CAATTG 1 cut(s) 338
MvaI CCWGG 2 cut(s) 296, 401
MwoI GCNNNNNNNGC 3 cut(s) 157, 185, 538
NcoI CCATGG 1 cut(s) 238
NdeII GATC 1 cut(s) 385
NlaIII CATG 6 cut(s) 76, 115, 242, 271, 395, 458
NlaIV GGNNCC 2 cut(s) 353, 397
NsbI TGCGCA 1 cut(s) 453
NspI RCATGY 1 cut(s) 76
PagI TCATGA 1 cut(s) 111
PfeI GAWTC 2 cut(s) 212, 280
PkrI GCNGC 4 cut(s) 106, 153, 190, 466
PshBI ATTAAT 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 294, 399
PspGI CCWGG 2 cut(s) 294, 399
PspN4I GGNNCC 2 cut(s) 353, 397
PspPI GGNCC 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 191
SaqAI TTAA 4 cut(s) 6, 80, 128, 144
SatI GCNGC 4 cut(s) 105, 152, 189, 465
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 296, 401
SetI ASST 5 cut(s) 12, 36, 193, 322, 410
SfaNI GCATC 2 cut(s) 188, 529
SinI GGWCC 1 cut(s) 352
Sse9I AATT 3 cut(s) 23, 145, 338
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 294, 399
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 3 cut(s) 197, 258, 356
TasI AATT 3 cut(s) 23, 145, 338
TfiI GAWTC 2 cut(s) 212, 280
Tru1I TTAA 4 cut(s) 6, 80, 128, 144
Tru9I TTAA 4 cut(s) 6, 80, 128, 144
TscAI CASTG 2 cut(s) 263, 543
TseI GCWGC 4 cut(s) 104, 151, 188, 464
TspDTI ATGAA 4 cut(s) 69, 129, 204, 471
TspRI CASTG 2 cut(s) 263, 543
VpaK11BI GGWCC 1 cut(s) 352
VspI ATTAAT 1 cut(s) 128
XceI RCATGY 1 cut(s) 76
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.