Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008336

Physical Location & Seq

Genomic Coordinates Forward (+)

22345570 .. 22346012

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTATTACTTGACGAGCTTTCTCCTCCTAGTGTTCGCTTCATCTCTCCAGATTATCTTGCTCTTTGACTCGTATTTTCACGTGGTTATTCATTACGGATACAAAGTTTCTCAATGGAGGAAGCTTGGGTATGACAAGGACCCAACCCATGAGAATTTAAGGAAGCTGTTGGAAGCCCCGGAAATCGATGCAGAGCAGTTGATGGCTGACCGGGTTCCTCCACCGAAGTTTATTAGATGTGACCAGCATGGCAGCCAATCGAGGTTTCTTTTTGCAAAGTTGAATCCATCTGTTACCCAGAATTCAACACACACTGACGGTTCAGATATTATTTTCACCGATGATCTGAGCTTGCAAGTATTTTTAGATCACTTGCAGGTCCTTGCAGTGCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001501 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006900 GO:0006996 GO:0007275 GO:0008150 GO:0008270 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022607 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0034622 GO:0035107 GO:0035138 GO:0035459 GO:0043009 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046907 GO:0046914 GO:0048193 GO:0048194 GO:0048475 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048731 GO:0048736 GO:0048856 GO:0051179 GO:0051216 GO:0051234 GO:0051641 GO:0051649 GO:0051668 GO:0061024 GO:0061448 GO:0065003 GO:0070971 GO:0071840 GO:0090110 GO:0090114 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1904888

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

133

Amino Acids

15.22

Weight (kDa)

5.78

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43670
fragaria_vesca	FvH4_3g28910 FvH4_3g28910 FvH4_3g28910
malus_domestica	MD04G1211400.v1.1 MD12G1226200.v1.1
prunus_persica	Prupe.1G027900_v2.0.a1
pyrus_communis	pycom04g01860 pycom04g18730 pycom04g18740 pycom12g21060 pycom12g21090
rosa_chinensis	RchiOBHm_Chr5g0051941
rosa_laevigata	RLG00000034852
rosa_multiflora	Rmu_co8514153.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027500
rosa_rugosa	Rorug05G0276200 Rorug05G0276300
rosa_samantha	Rh5AG348200 Rh5BG358800 Rh5CG384400 Rh5DG374200
rosa_wichuraiana	Rw5G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	154, 301
AcvI	CACGTG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	283, 306
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	4 cut(s)	18, 124, 166, 351
AluI	AGCT	4 cut(s)	18, 124, 166, 351
ApeKI	GCWGC	1 cut(s)	252
ApoI	RAATTY	2 cut(s)	154, 301
AspS9I	GGNCC	2 cut(s)	139, 379
AsuC2I	CCSGG	2 cut(s)	179, 212
AsuHPI	GGTGA	1 cut(s)	328
AvaII	GGWCC	2 cut(s)	139, 379
BbrPI	CACGTG	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	2 cut(s)	196, 295
BciVI	GTATCC	1 cut(s)	92
BcnI	CCSGG	2 cut(s)	179, 212
BfaI	CTAG	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	179, 212
Bme18I	GGWCC	2 cut(s)	139, 379
BmgT120I	GGNCC	2 cut(s)	139, 379
BmiI	GGNNCC	2 cut(s)	141, 216
BmrFI	CCNGG	2 cut(s)	179, 212
BmsI	GCATC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	179, 212
Bsa29I	ATCGAT	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	177
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	264
BshVI	ATCGAT	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	179, 211
Bsp143I	GATC	2 cut(s)	343, 367
BspCNI	CTCAG	1 cut(s)	339
BspDI	ATCGAT	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	141, 216
BspMI	ACCTGC	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	343, 367
Bst4CI	ACNGT	1 cut(s)	320
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	347
BstKTI	GATC	2 cut(s)	346, 370
BstMBI	GATC	2 cut(s)	343, 367
BstSCI	CCNGG	2 cut(s)	177, 210
BstV1I	GCAGC	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	92
BsuTUI	ATCGAT	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	312, 393
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	139, 379
ClaI	ATCGAT	1 cut(s)	186
CviAII	CATG	2 cut(s)	149, 248
CviJI	RGCY	8 cut(s)	18, 124, 166, 176, 206, 255, 351, 396
CviKI_1	RGCY	8 cut(s)	18, 124, 166, 176, 206, 255, 351, 396
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	2 cut(s)	345, 369
DpnII	GATC	2 cut(s)	343, 367
Eco47I	GGWCC	2 cut(s)	139, 379
Eco72I	CACGTG	1 cut(s)	82
EcoO109I	RGGNCCY	2 cut(s)	139, 379
EcoRI	GAATTC	1 cut(s)	301
FaeI	CATG	2 cut(s)	152, 251
FaiI	YATR	3 cut(s)	132, 150, 249
FatI	CATG	2 cut(s)	148, 247
Fnu4HI	GCNGC	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	32
HapII	CCGG	2 cut(s)	179, 211
Hin1II	CATG	2 cut(s)	152, 251
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	2 cut(s)	68, 283
HpaII	CCGG	2 cut(s)	179, 211
HphI	GGTGA	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	325, 348
Hpy188III	TCNNGA	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	6 cut(s)	191, 275, 355, 376, 386, 391
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	152, 251
Kzo9I	GATC	2 cut(s)	343, 367
LpnPI	CCDG	6 cut(s)	62, 192, 224, 257, 311, 362
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	239, 292
MalI	GATC	2 cut(s)	345, 369
MboI	GATC	2 cut(s)	343, 367
MluCI	AATT	2 cut(s)	154, 301
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	4 cut(s)	35, 111, 228, 255
MseI	TTAA	1 cut(s)	158
MspI	CCGG	2 cut(s)	179, 211
MspR9I	CCNGG	2 cut(s)	179, 212
NciI	CCSGG	2 cut(s)	179, 212
NdeII	GATC	2 cut(s)	343, 367
NlaIII	CATG	2 cut(s)	152, 251
NlaIV	GGNNCC	2 cut(s)	141, 216
NmuCI	GTSAC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	254
PleI	GAGTC	1 cut(s)	62
PmaCI	CACGTG	1 cut(s)	82
PmlI	CACGTG	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	62
Ppu21I	YACGTR	1 cut(s)	82
PpuMI	RGGWCCY	2 cut(s)	139, 379
Psp5II	RGGWCCY	2 cut(s)	139, 379
PspCI	CACGTG	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	141, 216
PspPI	GGNCC	2 cut(s)	139, 379
PspPPI	RGGWCCY	2 cut(s)	139, 379
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	2 cut(s)	343, 367
Sau96I	GGNCC	2 cut(s)	139, 379
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	179, 212
SetI	ASST	7 cut(s)	20, 84, 126, 168, 266, 353, 381
SfaNI	GCATC	1 cut(s)	178
SinI	GGWCC	2 cut(s)	139, 379
Sse9I	AATT	2 cut(s)	154, 301
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	177, 210
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	186, 260
TasI	AATT	2 cut(s)	154, 301
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	2 cut(s)	319, 393
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	30, 80
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	2 cut(s)	319, 393
VpaK11BI	GGWCC	2 cut(s)	139, 379
XapI	RAATTY	2 cut(s)	154, 301
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.