MD13G1002200.v1.1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
136755 .. 142344
5590 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1002200.v1.1.491

Sequence Viewer

Length: 1272 bp
ATGAACTCGACCCCGGCTTACAGTAACGGCTACCAGCAGCAGCAGCAGCAGCCACACGGGATGAGCCAGAGGGATAGAGTCCGCCGGGGAACACGTGCGAGGTCACGTGAGCTCAGAGACAACTTCGGCAGTGGTGGTAATTTTGGCGGGCTTAGGGTTTCTGAGCACAATAAGCAGCAGCAACAACAACAGGGAGCGCCTTGTACGGACTTCGACATGGCCTATTTCCACTCCTACGCGCACGTCGGCATCCACGAAGAAATGATCAAGGACCGTGTACGCACTGAATCTTATAGGGCGGCAATCATGCAGCACCAGAGCTCTATAGCAGGCAAAGTTGTAGTGGATGTTGGCTGTGGCACTGGCATTCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAACGTGTATATGCTGTTGATGCAAGTGACATTGCAGTGCAGGCAAATGAAGTTGTGAAAGCAAACAATCTATCTGAAACCGTCATCGTACTACATGGGCGAGTTGAGGATGTCAATATTGATGAGGAGGTTGATGTTATAATTTCAGAATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGTGTGATCACAGCAAGAGATCGCTGGCTAAAACCTGGAGGTCTAATACTTCCTTCAAGTGCAACGTTGTACATGGCACCTATCACACATTCTGATAGATACAGTGAAAGCATAGATTTCTGGCGCAATGTTTATGGAATTGACATGTCTGCCATGTTGCCATTGGCAAAACAATGTGCGTTTGAAGAGCCATCTGTTGAGACGATTGTGGGTGAGAATGTTTTGACATGGCCACATGTGGTTAAGCATGTGGATTGCCATACAGTTACACATCATGAGTTAGAATCTGTTACGGCAAACTACAAGTTCAAGTCAATGATGCGAGCTCCATTACATGGGTTTGCATTTTGGTTTGATGTCGAATTCAGTGGACCTACATTAGCTCCTACAAATAATCAGGCACCATCCGTGCTTTTTAACAATCTTCCAGTGGAGAGTCAGCAGAGGAAGAAACGAGCAAATCCCAATGAAGCATTGGTTCTGTCCACTGCACCTGAGGACCCTCCAACGCATTGGCAACAGACTGTGCTATACTTCTATGAGCCAATTGAGCTGGAGCAAGATCAACTCATTGAAGGTTCTGTAACACTATCACAAAGCAAAGAAAACCGCCGATTCATGAATATCCACCTTGAATATGCCTCAGGTGGAAGATCCTTTGTAAAAGAGTCTGTAATGAGGTGA

Protein Analysis

424

Amino Acids

47.63

Weight (kDa)

5.9

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_9 PF08003 92 - 216 4e-07 Protein of unknown function (DUF1698)
TRM5-TYW2_MTfase PF02475 99 - 187 2.7e-07 TRM5/TYW2 methyltransferase domain
TehB PF03848 99 - 213 7e-07 Tellurite resistance protein TehB
MTS PF05175 104 - 182 3.2e-08 Methyltransferase small domain
Methyltransf_23 PF13489 109 - 217 1.7e-06 Methyltransferase domain
PrmA PF06325 110 - 183 3.2e-13 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 111 - 217 2.1e-07 Methyltransferase domain
Methyltransf_25 PF13649 114 - 210 9.2e-12 Methyltransferase domain
Methyltransf_11 PF08241 115 - 212 5.3e-10 Methyltransferase domain
PRMT_C PF22528 216 - 320 5.9e-21 Arginine methyltransferase oligomerization subdomain
PRMT_C PF22528 353 - 411 1.6e-14 Arginine methyltransferase oligomerization subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AccB1I GGYRCC 2 cut(s) 664, 988
AccB7I CCANNNNNTGG 1 cut(s) 923
AccII CGCG 1 cut(s) 239
AciI CCGC 4 cut(s) 82, 147, 299, 1198
AclI AACGTT 1 cut(s) 653
AclWI GGATC 1 cut(s) 1236
AcoI YGGCCR 1 cut(s) 818
AcsI RAATTY 1 cut(s) 950
AcvI CACGTG 2 cut(s) 95, 107
AfaI GTAC 4 cut(s) 205, 279, 489, 659
AfiI CCNNNNNNNGG 1 cut(s) 923
AflIII ACRYGT 4 cut(s) 92, 403, 732, 823
AgsI TTSAA 5 cut(s) 645, 773, 898, 1163, 1223
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 5 cut(s) 112, 321, 914, 971, 1141
AluI AGCT 5 cut(s) 112, 321, 914, 971, 1141
Alw21I GWGCWC 5 cut(s) 114, 168, 323, 388, 916
Alw26I GTCTC 2 cut(s) 111, 782
AlwI GGATC 1 cut(s) 1236
AoxI GGCC 2 cut(s) 219, 818
ApeKI GCWGC 8 cut(s) 37, 40, 43, 46, 49, 175, 178, 310
ApoI RAATTY 1 cut(s) 950
AspLEI GCGC 3 cut(s) 199, 241, 714
AspS9I GGNCC 3 cut(s) 271, 959, 1087
AsuC2I CCSGG 2 cut(s) 14, 86
AsuHPI GGTGA 1 cut(s) 812
AvaII GGWCC 3 cut(s) 271, 959, 1087
AxyI CCTNAGG 2 cut(s) 1083, 1231
BalI TGGCCA 1 cut(s) 820
BanI GGYRCC 2 cut(s) 664, 988
BanII GRGCYC 3 cut(s) 114, 323, 916
BbrPI CACGTG 2 cut(s) 95, 107
Bbv12I GWGCWC 5 cut(s) 114, 168, 323, 388, 916
BbvI GCAGC 8 cut(s) 49, 52, 55, 58, 61, 187, 190, 322
BccI CCATC 3 cut(s) 547, 787, 1000
BceAI ACGGC 2 cut(s) 43, 897
BciT130I CCWGG 1 cut(s) 624
BclI TGATCA 2 cut(s) 264, 594
BcnI CCSGG 2 cut(s) 14, 86
BcoDI GTCTC 2 cut(s) 111, 782
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 9 cut(s) 38, 41, 44, 47, 50, 176, 179, 300, 311
BlsI GCNGC 9 cut(s) 39, 42, 45, 48, 51, 177, 180, 301, 312
Bme1390I CCNGG 3 cut(s) 14, 86, 624
Bme18I GGWCC 3 cut(s) 271, 959, 1087
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 3 cut(s) 271, 959, 1087
BmiI GGNNCC 3 cut(s) 666, 990, 1089
BmrFI CCNGG 3 cut(s) 14, 86, 624
BmsI GCATC 3 cut(s) 258, 409, 897
BpmI CTGGAG 2 cut(s) 645, 1163
Bpu10I CCTNAGC 2 cut(s) 152, 387
BpuMI CCSGG 2 cut(s) 14, 86
BsaAI YACGTR 2 cut(s) 95, 107
BsaJI CCNNGG 2 cut(s) 12, 85
BsaXI ACNNNNNCTCC 2 cut(s) 955, 985
Bsc4I CCNNNNNNNGG 1 cut(s) 923
Bse1I ACTGG 2 cut(s) 367, 1016
Bse21I CCTNAGG 2 cut(s) 1083, 1231
Bse3DI GCAATG 2 cut(s) 429, 721
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 2 cut(s) 12, 85
BseGI GGATG 6 cut(s) 66, 249, 352, 514, 558, 992
BseLI CCNNNNNNNGG 1 cut(s) 923
BseMI GCAATG 2 cut(s) 429, 721
BseMII CTCAG 5 cut(s) 127, 153, 401, 1074, 1245
BseNI ACTGG 2 cut(s) 367, 1016
BseRI GAGGAG 1 cut(s) 539
BseXI GCAGC 8 cut(s) 49, 52, 55, 58, 61, 187, 190, 322
BseYI CCCAGC 1 cut(s) 583
BsgI GTGCAG 2 cut(s) 458, 1062
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 2 cut(s) 221, 820
BshNI GGYRCC 2 cut(s) 664, 988
BsiHKAI GWGCWC 5 cut(s) 114, 168, 323, 388, 916
BsiSI CCGG 2 cut(s) 14, 85
BslI CCNNNNNNNGG 1 cut(s) 923
BsmAI GTCTC 2 cut(s) 111, 782
BsmBI CGTCTC 1 cut(s) 782
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 2 cut(s) 221, 820
Bsp1286I GDGCHC 5 cut(s) 114, 168, 323, 388, 916
Bsp1407I TGTACA 1 cut(s) 657
Bsp143I GATC 5 cut(s) 264, 594, 607, 1150, 1241
BspACI CCGC 4 cut(s) 82, 147, 299, 1198
BspANI GGCC 2 cut(s) 221, 820
BspCNI CTCAG 5 cut(s) 126, 154, 400, 1075, 1244
BspFNI CGCG 1 cut(s) 239
BspHI TCATGA 2 cut(s) 862, 1206
BspLI GGNNCC 3 cut(s) 666, 990, 1089
BspPI GGATC 1 cut(s) 1236
BspQI GCTCTTC 1 cut(s) 768
BspT107I GGYRCC 2 cut(s) 664, 988
BsrDI GCAATG 2 cut(s) 429, 721
BsrGI TGTACA 1 cut(s) 657
BsrI ACTGG 2 cut(s) 367, 1016
BssECI CCNNGG 2 cut(s) 12, 85
BssMI GATC 5 cut(s) 264, 594, 607, 1150, 1241
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 6 cut(s) 23, 275, 481, 692, 853, 1114
Bst6I CTCTTC 1 cut(s) 768
BstAUI TGTACA 1 cut(s) 657
BstBAI YACGTR 2 cut(s) 95, 107
BstC8I GCNNGC 5 cut(s) 149, 331, 441, 614, 912
BstDEI CTNAG 6 cut(s) 113, 152, 162, 387, 1083, 1231
BstF5I GGATG 6 cut(s) 66, 249, 352, 514, 558, 992
BstFNI CGCG 1 cut(s) 239
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 3 cut(s) 199, 241, 714
BstKTI GATC 5 cut(s) 267, 597, 610, 1153, 1244
BstMAI GTCTC 2 cut(s) 111, 782
BstMBI GATC 5 cut(s) 264, 594, 607, 1150, 1241
BstMWI GCNNNNNNNGC 7 cut(s) 43, 46, 49, 172, 419, 440, 1138
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 4 cut(s) 565, 736, 827, 839
BstSCI CCNGG 3 cut(s) 12, 84, 622
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 8 cut(s) 49, 52, 55, 58, 61, 187, 190, 322
BstX2I RGATCY 1 cut(s) 1241
BstXI CCANNNNNNTGG 1 cut(s) 1101
BstYI RGATCY 1 cut(s) 1241
Bsu36I CCTNAGG 2 cut(s) 1083, 1231
BsuRI GGCC 2 cut(s) 221, 820
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 6 cut(s) 66, 249, 352, 514, 558, 992
BtsI GCAGTG 3 cut(s) 136, 441, 1074
BtsIMutI CAGTG 8 cut(s) 136, 282, 360, 441, 697, 961, 1023, 1074
Cac8I GCNNGC 5 cut(s) 149, 331, 441, 614, 912
CciI TCATGA 2 cut(s) 862, 1206
CfoI GCGC 3 cut(s) 199, 241, 714
Cfr13I GGNCC 3 cut(s) 271, 959, 1087
Csp6I GTAC 4 cut(s) 204, 278, 488, 658
CviQI GTAC 4 cut(s) 204, 278, 488, 658
DdeI CTNAG 6 cut(s) 113, 152, 162, 387, 1083, 1231
DpnI GATC 5 cut(s) 266, 596, 609, 1152, 1243
DpnII GATC 5 cut(s) 264, 594, 607, 1150, 1241
EaeI YGGCCR 1 cut(s) 818
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
EciI GGCGGA 1 cut(s) 71
Ecl136II GAGCTC 3 cut(s) 112, 321, 914
Eco24I GRGCYC 3 cut(s) 114, 323, 916
Eco47I GGWCC 3 cut(s) 271, 959, 1087
Eco53kI GAGCTC 3 cut(s) 112, 321, 914
Eco72I CACGTG 2 cut(s) 95, 107
Eco81I CCTNAGG 2 cut(s) 1083, 1231
EcoICRI GAGCTC 3 cut(s) 112, 321, 914
EcoO109I RGGNCCY 1 cut(s) 1087
EcoRI GAATTC 1 cut(s) 950
EcoRII CCWGG 1 cut(s) 622
EcoT38I GRGCYC 3 cut(s) 114, 323, 916
Esp3I CGTCTC 1 cut(s) 782
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 2 cut(s) 264, 594
Fnu4HI GCNGC 9 cut(s) 38, 41, 44, 47, 50, 176, 179, 300, 311
FokI GGATG 6 cut(s) 73, 236, 359, 521, 565, 979
FriOI GRGCYC 3 cut(s) 114, 323, 916
Fsp4HI GCNGC 9 cut(s) 38, 41, 44, 47, 50, 176, 179, 300, 311
GlaI GCGC 3 cut(s) 198, 240, 713
GluI GCNGC 9 cut(s) 38, 41, 44, 47, 50, 176, 179, 300, 311
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 2 cut(s) 645, 1163
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 2 cut(s) 221, 820
HapII CCGG 2 cut(s) 14, 85
HhaI GCGC 3 cut(s) 199, 241, 714
Hin6I GCGC 3 cut(s) 197, 239, 712
HinP1I GCGC 3 cut(s) 197, 239, 712
HinfI GANTC 6 cut(s) 78, 287, 872, 1024, 1203, 1256
HpaII CCGG 2 cut(s) 14, 85
HphI GGTGA 1 cut(s) 812
Hpy166II GTNNAC 3 cut(s) 278, 959, 1074
Hpy188I TCNGA 5 cut(s) 116, 163, 475, 547, 682
Hpy188III TCNNGA 2 cut(s) 863, 1207
Hpy8I GTNNAC 3 cut(s) 278, 959, 1074
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 651, 1157
HpyCH4III ACNGT 6 cut(s) 23, 275, 481, 692, 853, 1114
HpyCH4IV ACGT 5 cut(s) 94, 106, 243, 403, 653
HpyCH4V TGCA 8 cut(s) 310, 398, 422, 434, 439, 650, 932, 1079
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 46, 49, 172, 419, 440, 1138
HpyF3I CTNAG 6 cut(s) 113, 152, 162, 387, 1083, 1231
HpySE526I ACGT 5 cut(s) 94, 106, 243, 403, 653
HspAI GCGC 3 cut(s) 197, 239, 712
Ksp22I TGATCA 2 cut(s) 264, 594
Kzo9I GATC 5 cut(s) 264, 594, 607, 1150, 1241
LguI GCTCTTC 1 cut(s) 768
LmnI GCTCC 4 cut(s) 194, 919, 976, 1144
Lsp1109I GCAGC 8 cut(s) 49, 52, 55, 58, 61, 187, 190, 322
LweI GCATC 3 cut(s) 258, 409, 897
MaeII ACGT 5 cut(s) 94, 106, 243, 403, 653
MaeIII GTNAC 6 cut(s) 23, 102, 425, 853, 877, 1171
MalI GATC 5 cut(s) 266, 596, 609, 1152, 1243
MboI GATC 5 cut(s) 264, 594, 607, 1150, 1241
MboII GAAGA 5 cut(s) 269, 785, 1004, 1048, 1251
MfeI CAATTG 1 cut(s) 1134
MflI RGATCY 1 cut(s) 1241
MhlI GDGCHC 5 cut(s) 114, 168, 323, 388, 916
MlsI TGGCCA 1 cut(s) 820
MluCI AATT 5 cut(s) 139, 540, 726, 950, 1134
MluNI TGGCCA 1 cut(s) 820
MlyI GAGTC 3 cut(s) 87, 1033, 1265
MmeI TCCRAC 1 cut(s) 1118
Mox20I TGGCCA 1 cut(s) 820
MscI TGGCCA 1 cut(s) 820
MseI TTAA 2 cut(s) 831, 1005
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 1 cut(s) 820
MspI CCGG 2 cut(s) 14, 85
MspR9I CCNGG 3 cut(s) 14, 86, 624
MunI CAATTG 1 cut(s) 1134
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 1 cut(s) 624
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 7 cut(s) 43, 46, 49, 172, 419, 440, 1138
NciI CCSGG 2 cut(s) 14, 86
NdeII GATC 5 cut(s) 264, 594, 607, 1150, 1241
NlaIV GGNNCC 3 cut(s) 666, 990, 1089
NmuCI GTSAC 2 cut(s) 102, 425
NspI RCATGY 4 cut(s) 565, 736, 827, 839
PagI TCATGA 2 cut(s) 862, 1206
PciI ACATGT 2 cut(s) 732, 823
PciSI GCTCTTC 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 1 cut(s) 366
PfeI GAWTC 3 cut(s) 287, 872, 1203
PflMI CCANNNNNTGG 1 cut(s) 923
PkrI GCNGC 9 cut(s) 39, 42, 45, 48, 51, 177, 180, 301, 312
PleI GAGTC 3 cut(s) 86, 1032, 1264
PmaCI CACGTG 2 cut(s) 95, 107
PmlI CACGTG 2 cut(s) 95, 107
PpsI GAGTC 3 cut(s) 86, 1032, 1264
Ppu21I YACGTR 2 cut(s) 95, 107
PpuMI RGGWCCY 1 cut(s) 1087
PscI ACATGT 2 cut(s) 732, 823
PsiI TTATAA 1 cut(s) 539
Psp124BI GAGCTC 3 cut(s) 114, 323, 916
Psp1406I AACGTT 1 cut(s) 653
Psp5II RGGWCCY 1 cut(s) 1087
Psp6I CCWGG 1 cut(s) 622
PspCI CACGTG 2 cut(s) 95, 107
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 3 cut(s) 666, 990, 1089
PspPI GGNCC 3 cut(s) 271, 959, 1087
PspPPI RGGWCCY 1 cut(s) 1087
PsuI RGATCY 1 cut(s) 1241
RsaI GTAC 4 cut(s) 205, 279, 489, 659
RsaNI GTAC 4 cut(s) 204, 278, 488, 658
RseI CAYNNNNRTG 1 cut(s) 434
SacI GAGCTC 3 cut(s) 114, 323, 916
SapI GCTCTTC 1 cut(s) 768
SaqAI TTAA 2 cut(s) 831, 1005
SatI GCNGC 9 cut(s) 38, 41, 44, 47, 50, 176, 179, 300, 311
Sau3AI GATC 5 cut(s) 264, 594, 607, 1150, 1241
Sau96I GGNCC 3 cut(s) 271, 959, 1087
SchI GAGTC 3 cut(s) 87, 1033, 1265
ScrFI CCNGG 3 cut(s) 14, 86, 624
SduI GDGCHC 5 cut(s) 114, 168, 323, 388, 916
SfaNI GCATC 3 cut(s) 258, 409, 897
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 3 cut(s) 271, 959, 1087
SmiMI CAYNNNNRTG 1 cut(s) 434
Sse9I AATT 5 cut(s) 139, 540, 726, 950, 1134
SsiI CCGC 4 cut(s) 82, 147, 299, 1198
SspI AATATT 1 cut(s) 517
SstI GAGCTC 3 cut(s) 114, 323, 916
StyD4I CCNGG 3 cut(s) 12, 84, 622
TaaI ACNGT 6 cut(s) 23, 275, 481, 692, 853, 1114
TaiI ACGT 5 cut(s) 97, 109, 246, 406, 656
TaqI TCGA 3 cut(s) 8, 213, 948
TasI AATT 5 cut(s) 139, 540, 726, 950, 1134
TatI WGTACW 1 cut(s) 657
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 3 cut(s) 287, 872, 1203
Tru1I TTAA 2 cut(s) 831, 1005
Tru9I TTAA 2 cut(s) 831, 1005
TscAI CASTG 8 cut(s) 136, 289, 367, 441, 697, 961, 1023, 1081
TseFI GTSAC 2 cut(s) 102, 425
TseI GCWGC 8 cut(s) 37, 40, 43, 46, 49, 175, 178, 310
Tsp45I GTSAC 2 cut(s) 102, 425
TspDTI ATGAA 5 cut(s) 17, 462, 1071, 1195, 1223
TspGWI ACGGA 2 cut(s) 221, 985
TspRI CASTG 8 cut(s) 136, 289, 367, 441, 697, 961, 1023, 1081
Van91I CCANNNNNTGG 1 cut(s) 923
VpaK11BI GGWCC 3 cut(s) 271, 959, 1087
XapI RAATTY 1 cut(s) 950
XceI RCATGY 4 cut(s) 565, 736, 827, 839
XcmI CCANNNNNNNNNTGG 2 cut(s) 748, 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.