Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8488887.1

Orthogroup ID

OG0009348

Physical Location & Seq

Genomic Coordinates Reverse (-)

501 .. 2127

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8488887.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgtcttgcatttcttctgctctttttgttccagtgtctgccatgctgcctttggcaaagcaatgtgcgtttgaagagccatgtgttgagacaatcgtgggtgagaatgttttaacatggccacatgtggttaagcatgtggactgccataaaatttcacttcatgagctggaatctgttacaacaagctataagttcaaatcaatgatgcgagctccactacatgggtttgcattttggtttgacgttgaattcaatggacctgcaatagctctcacaaataatcatgcaccatcccaacttcctaacaatcatacagtggagggtcagcagaggaggaaacgggcaaatcccagtgatgcgttggtgctgtcgactgcacctgaggaccccccaacgcattggcaacagactgtgctatacttttatgacccaatagaggtggagcaagatcaactgattgaaggttccgttacattatcacaaagcaaagaaaatcgtcgattcatgaatatccatctcgaatatgcctcgggtggaagatcctttgtcaaagagtcagtgatgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_25 Methyltransf_31 PrmA

Protein Analysis

190

Amino Acids

21.47

Weight (kDa)

5.97

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20020 AT3G20020 AT3G20020
fragaria_vesca	FvH4_4g37250 FvH4_4g37250
malus_domestica	MD13G1002200.v1.1
prunus_persica	Prupe.1G350300_v2.0.a1 Prupe.1G350300_v2.0.a1
pyrus_communis	pycom13g00190 pycom16g00120
rosa_chinensis	RchiOBHm_Chr4g0447051
rosa_laevigata	RLG00000005609
rosa_multiflora	Rmu_co8488887.1_g000001 Rmu_sc0014071.1_g000006 Rmu_sc0019356.1_g000005
rosa_roxburghii	Rroxscaffold_5G00387370
rosa_rugosa	Rorug04G0377700
rosa_samantha	Rh4AG439000 Rh4BG447900 Rh4CG465000 Rh4DG446400
rosa_wichuraiana	Rw4G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	374
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	2 cut(s)	153, 251
AfiI	CCNNNNNNNGG	2 cut(s)	224, 439
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	5 cut(s)	74, 199, 251, 256, 464
AluBI	AGCT	4 cut(s)	169, 189, 215, 272
AluI	AGCT	4 cut(s)	169, 189, 215, 272
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	537
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	153, 251
AspS9I	GGNCC	2 cut(s)	260, 388
AsuHPI	GGTGA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	532
AvaII	GGWCC	2 cut(s)	260, 388
AxyI	CCTNAGG	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	2 cut(s)	301, 525
BcoDI	GTCTC	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	271
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	260, 388
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	2 cut(s)	260, 388
BmiI	GGNNCC	2 cut(s)	390, 469
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	2 cut(s)	198, 349
BmuI	ACTGGG	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 439
Bse1I	ACTGG	2 cut(s)	32, 354
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	1 cut(s)	293
BseLI	CCNNNNNNNGG	2 cut(s)	224, 439
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	2 cut(s)	32, 354
BseRI	GAGGAG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	224, 439
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	121
BsoBI	CYCGRG	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	451, 542
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	376
BspHI	TCATGA	2 cut(s)	163, 507
BspLI	GGNNCC	2 cut(s)	390, 469
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	537
BspQI	GCTCTTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	32, 354
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	2 cut(s)	451, 542
Bst4CI	ACNGT	2 cut(s)	319, 415
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	293
BstKTI	GATC	2 cut(s)	454, 545
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	451, 542
BstNSI	RCATGY	2 cut(s)	128, 140
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	542
BstXI	CCANNNNNNTGG	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	542
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	293
BtsIMutI	CAGTG	4 cut(s)	39, 324, 361, 567
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	2 cut(s)	163, 507
Cfr13I	GGNCC	2 cut(s)	260, 388
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	9 cut(s)	43, 81, 117, 125, 137, 164, 224, 287, 508
CviJI	RGCY	6 cut(s)	79, 121, 169, 189, 215, 272
CviKI_1	RGCY	6 cut(s)	79, 121, 169, 189, 215, 272
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	2 cut(s)	453, 544
DpnII	GATC	2 cut(s)	451, 542
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	260, 388
Eco53kI	GAGCTC	1 cut(s)	215
Eco81I	CCTNAGG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	532
EcoICRI	GAGCTC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	9 cut(s)	46, 84, 120, 128, 140, 167, 227, 290, 511
FatI	CATG	9 cut(s)	42, 80, 116, 124, 136, 163, 223, 286, 507
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	121
Hin1II	CATG	9 cut(s)	46, 84, 120, 128, 140, 167, 227, 290, 511
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	3 cut(s)	173, 504, 557
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	142, 375
Hpy188III	TCNNGA	3 cut(s)	164, 508, 521
Hpy8I	GTNNAC	2 cut(s)	142, 375
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	2 cut(s)	319, 415
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	5 cut(s)	9, 233, 266, 290, 380
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	9 cut(s)	46, 84, 120, 128, 140, 167, 227, 290, 511
Kzo9I	GATC	2 cut(s)	451, 542
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	220, 445
LpnPI	CCDG	5 cut(s)	45, 155, 276, 367, 396
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	2 cut(s)	198, 349
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	178, 472
MalI	GATC	2 cut(s)	453, 544
MboI	GATC	2 cut(s)	451, 542
MboII	GAAGA	3 cut(s)	6, 86, 552
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	121
MluCI	AATT	2 cut(s)	153, 251
MluNI	TGGCCA	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	7 cut(s)	316, 327, 330, 379, 433, 541, 561
Mox20I	TGGCCA	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	121
MseI	TTAA	2 cut(s)	113, 132
Msp20I	TGGCCA	1 cut(s)	121
NdeII	GATC	2 cut(s)	451, 542
NlaIII	CATG	9 cut(s)	46, 84, 120, 128, 140, 167, 227, 290, 511
NlaIV	GGNNCC	2 cut(s)	390, 469
NspI	RCATGY	2 cut(s)	128, 140
PagI	TCATGA	2 cut(s)	163, 507
PciI	ACATGT	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	173, 504
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PpuMI	RGGWCCY	1 cut(s)	388
PscI	ACATGT	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	390, 469
PspPI	GGNCC	2 cut(s)	260, 388
PspPPI	RGGWCCY	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	542
SacI	GAGCTC	1 cut(s)	217
SalI	GTCGAC	1 cut(s)	373
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	113, 132
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	2 cut(s)	451, 542
Sau96I	GGNCC	2 cut(s)	260, 388
SchI	GAGTC	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	217
SfaNI	GCATC	2 cut(s)	198, 349
SinI	GGWCC	2 cut(s)	260, 388
Sse9I	AATT	2 cut(s)	153, 251
SstI	GAGCTC	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	319, 415
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	374, 502, 522
TasI	AATT	2 cut(s)	153, 251
TfiI	GAWTC	2 cut(s)	173, 504
Tru1I	TTAA	2 cut(s)	113, 132
Tru9I	TTAA	2 cut(s)	113, 132
TscAI	CASTG	4 cut(s)	39, 324, 361, 567
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	152, 496, 524
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	4 cut(s)	39, 324, 361, 567
Van91I	CCANNNNNTGG	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	260, 388
XapI	RAATTY	2 cut(s)	153, 251
XceI	RCATGY	2 cut(s)	128, 140
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 361
XmiI	GTMKAC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.