Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019356.1

Orthogroup ID

OG0009348

Physical Location & Seq

Genomic Coordinates Forward (+)

9773 .. 13845

Gene Structure 4073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019356.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgaactccaaccccgcatacaataacagtaacagtaacggctactatgcacagccgccgcagcaccagcgccagcaccaccaaggaatgaacagagttcgccggggaccacgtggcaggtcgcgtgacggccatggaagtgacattagggtttctgaggctaccaagcagccggaaggtgcgccttgcacggacttcgacatggcctatttccactcctacgcccacgttggcatccacgaagagatgatcaaggatcgtgtgcgcactgaaacttacagggcagcaattatgcagcaccagagttgtattgctggcaaagtggtagtggatgttggctgtggcacaggaattctctctatcttttgtgctcaagctggtgcaaaacgtgtatatgctgtcgatgcaagtgacattgcagtgcaggcaaatgaagttgtaaaagcaaacaatctatctgataccatcatcgtactacatgggcgagttgaggatgttgatattgatgaggaggttgatgttattatttcagagtggatgggatacatgcttctgtatgagagtatgcttggaagtgtcattacagccagagatcgctggctaaaacctggaggtcttatacttccttcaaatgcaacgttgtacatagcacctatcacacatgctgatagatacagtgaaagcattgatttctggcgcaatgtttatggaattgatatgtctgccatgctgcctttggcaaagcaatgtgcgtttgaagagccatgtgttgagacaatcgtgggtgagaatgttttaacatggccacatgtggttaagcatgtggactgccataaaatttcacttcatgagctggaatctgttacaacaagctataagttcaaatcaatgatgcgaggtttgtctaatgaattgctattacagactgtgctatacttttatgacccaatagaggtggagcaagaccaactgattgaaggttccgttacattatcacaaagcaaagaaaatcgtcgattcatgaatatccatctcgaatatgcctcgggtggaagatcctttgtcaaagagtcagtgatgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_25 Methyltransf_31 PrmA

Protein Analysis

361

Amino Acids

40.63

Weight (kDa)

5.83

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20020 AT3G20020 AT3G20020
fragaria_vesca	FvH4_4g37250 FvH4_4g37250
malus_domestica	MD13G1002200.v1.1
prunus_persica	Prupe.1G350300_v2.0.a1 Prupe.1G350300_v2.0.a1
pyrus_communis	pycom13g00190 pycom16g00120
rosa_chinensis	RchiOBHm_Chr4g0447051
rosa_laevigata	RLG00000005609
rosa_multiflora	Rmu_co8488887.1_g000001 Rmu_sc0014071.1_g000006 Rmu_sc0019356.1_g000005
rosa_roxburghii	Rroxscaffold_5G00387370
rosa_rugosa	Rorug04G0377700
rosa_samantha	Rh4AG439000 Rh4BG447900 Rh4CG465000 Rh4DG446400
rosa_wichuraiana	Rw4G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	108
AccII	CGCG	1 cut(s)	124
AciI	CCGC	3 cut(s)	15, 56, 59
AclI	AACGTT	1 cut(s)	638
AclWI	GGATC	2 cut(s)	264, 1050
AcoI	YGGCCR	2 cut(s)	130, 803
AcsI	RAATTY	2 cut(s)	351, 837
AcvI	CACGTG	1 cut(s)	113
AfaI	GTAC	2 cut(s)	474, 644
AfiI	CCNNNNNNNGG	1 cut(s)	952
AflIII	ACRYGT	2 cut(s)	388, 808
AgsI	TTSAA	4 cut(s)	630, 758, 883, 977
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	3 cut(s)	377, 853, 873
AluI	AGCT	3 cut(s)	377, 853, 873
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	2 cut(s)	264, 1050
Ama87I	CYCGRG	1 cut(s)	1045
AoxI	GGCC	3 cut(s)	130, 204, 803
ApeKI	GCWGC	5 cut(s)	61, 169, 284, 295, 730
ApoI	RAATTY	2 cut(s)	351, 837
AspLEI	GCGC	4 cut(s)	72, 184, 267, 699
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	797
AvaI	CYCGRG	1 cut(s)	1045
AvaII	GGWCC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	805
BarI	GAAGNNNNNNTAC	2 cut(s)	565, 597
BbrPI	CACGTG	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	5 cut(s)	73, 181, 296, 307, 717
BccI	CCATC	3 cut(s)	473, 532, 1038
BceAI	ACGGC	2 cut(s)	55, 145
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	1 cut(s)	609
BciVI	GTATCC	1 cut(s)	536
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	767
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	7 cut(s)	56, 59, 62, 170, 285, 296, 731
BlsI	GCNGC	7 cut(s)	57, 60, 63, 171, 286, 297, 732
Bme1390I	CCNGG	2 cut(s)	104, 609
Bme18I	GGWCC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	1045
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	108, 982
BmrFI	CCNGG	2 cut(s)	104, 609
BmsI	GCATC	3 cut(s)	243, 394, 882
BpmI	CTGGAG	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	113
BsaJI	CCNNGG	4 cut(s)	82, 103, 133, 1044
Bsc4I	CCNNNNNNNGG	1 cut(s)	952
Bse3DI	GCAATG	3 cut(s)	414, 706, 752
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	4 cut(s)	82, 103, 133, 1044
BseGI	GGATG	4 cut(s)	234, 337, 499, 543
BseLI	CCNNNNNNNGG	1 cut(s)	952
BseMI	GCAATG	3 cut(s)	414, 706, 752
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	5 cut(s)	73, 181, 296, 307, 717
BsgI	GTGCAG	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	132, 206, 805
BsiHKAI	GWGCWC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	1045
BsiSI	CCGG	2 cut(s)	103, 173
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	952
BsmAI	GTCTC	1 cut(s)	767
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	132, 206, 805
BsoBI	CYCGRG	1 cut(s)	1045
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	4 cut(s)	249, 256, 592, 1055
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	3 cut(s)	15, 56, 59
BspANI	GGCC	3 cut(s)	132, 206, 805
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	124
BspHI	TCATGA	2 cut(s)	847, 1020
BspLI	GGNNCC	2 cut(s)	108, 982
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	264, 1050
BspQI	GCTCTTC	1 cut(s)	753
BsrDI	GCAATG	3 cut(s)	414, 706, 752
BsrGI	TGTACA	1 cut(s)	642
BssECI	CCNNGG	4 cut(s)	82, 103, 133, 1044
BssMI	GATC	4 cut(s)	249, 256, 592, 1055
BssT1I	CCWWGG	2 cut(s)	82, 133
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	4 cut(s)	29, 35, 677, 928
Bst6I	CTCTTC	2 cut(s)	237, 753
BstAUI	TGTACA	1 cut(s)	642
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	4 cut(s)	74, 316, 426, 599
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	4 cut(s)	234, 337, 499, 543
BstFNI	CGCG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	4 cut(s)	72, 184, 267, 699
BstKTI	GATC	4 cut(s)	252, 259, 595, 1058
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	4 cut(s)	249, 256, 592, 1055
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 67, 404, 425
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	4 cut(s)	550, 665, 812, 824
BstSCI	CCNGG	2 cut(s)	102, 607
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	5 cut(s)	73, 181, 296, 307, 717
BstX2I	RGATCY	1 cut(s)	1055
BstYI	RGATCY	1 cut(s)	1055
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	3 cut(s)	132, 206, 805
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	4 cut(s)	234, 337, 499, 543
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	4 cut(s)	267, 426, 682, 1080
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	4 cut(s)	74, 316, 426, 599
CciI	TCATGA	2 cut(s)	847, 1020
CfoI	GCGC	4 cut(s)	72, 184, 267, 699
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	473, 643
CspCI	CAANNNNNGTGG	2 cut(s)	936, 971
CviQI	GTAC	2 cut(s)	473, 643
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	4 cut(s)	251, 258, 594, 1057
DpnII	GATC	4 cut(s)	249, 256, 592, 1055
EaeI	YGGCCR	2 cut(s)	130, 803
Eam1104I	CTCTTC	2 cut(s)	237, 753
EarI	CTCTTC	2 cut(s)	237, 753
Eco130I	CCWWGG	2 cut(s)	82, 133
Eco47I	GGWCC	1 cut(s)	107
Eco72I	CACGTG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	1045
EcoRI	GAATTC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	2 cut(s)	82, 133
ErhI	CCWWGG	2 cut(s)	82, 133
FaqI	GGGAC	1 cut(s)	120
FauI	CCCGC	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	7 cut(s)	56, 59, 62, 170, 285, 296, 731
FokI	GGATG	4 cut(s)	221, 344, 506, 550
Fsp4HI	GCNGC	7 cut(s)	56, 59, 62, 170, 285, 296, 731
FspAI	RTGCGCAY	1 cut(s)	266
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	4 cut(s)	71, 183, 266, 698
GluI	GCNGC	7 cut(s)	56, 59, 62, 170, 285, 296, 731
GsuI	CTGGAG	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	3 cut(s)	132, 206, 805
HapII	CCGG	2 cut(s)	103, 173
HhaI	GCGC	4 cut(s)	72, 184, 267, 699
Hin6I	GCGC	4 cut(s)	70, 182, 265, 697
HinP1I	GCGC	4 cut(s)	70, 182, 265, 697
HinfI	GANTC	3 cut(s)	857, 1017, 1070
HpaII	CCGG	2 cut(s)	103, 173
HphI	GGTGA	1 cut(s)	797
Hpy166II	GTNNAC	1 cut(s)	826
Hpy188I	TCNGA	3 cut(s)	157, 460, 532
Hpy188III	TCNNGA	3 cut(s)	848, 1021, 1034
Hpy8I	GTNNAC	1 cut(s)	826
Hpy99I	CGWCG	1 cut(s)	1017
HpyAV	CCTTC	3 cut(s)	170, 636, 971
HpyCH4III	ACNGT	4 cut(s)	29, 35, 677, 928
HpyCH4IV	ACGT	4 cut(s)	112, 228, 388, 638
HpyCH4V	TGCA	8 cut(s)	50, 189, 295, 383, 407, 419, 424, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 67, 404, 425
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	4 cut(s)	112, 228, 388, 638
HspAI	GCGC	4 cut(s)	70, 182, 265, 697
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	4 cut(s)	249, 256, 592, 1055
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	1 cut(s)	958
Lsp1109I	GCAGC	5 cut(s)	73, 181, 296, 307, 717
LweI	GCATC	3 cut(s)	243, 394, 882
MaeII	ACGT	4 cut(s)	112, 228, 388, 638
MaeIII	GTNAC	7 cut(s)	29, 35, 125, 140, 410, 862, 985
MalI	GATC	4 cut(s)	251, 258, 594, 1057
MboI	GATC	4 cut(s)	249, 256, 592, 1055
MboII	GAAGA	3 cut(s)	254, 770, 1065
MflI	RGATCY	1 cut(s)	1055
MhlI	GDGCHC	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	805
MluCI	AATT	5 cut(s)	288, 351, 711, 837, 911
MluNI	TGGCCA	1 cut(s)	805
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	9 cut(s)	151, 484, 502, 505, 605, 890, 946, 1054, 1074
Mox20I	TGGCCA	1 cut(s)	805
MscI	TGGCCA	1 cut(s)	805
MseI	TTAA	2 cut(s)	797, 816
MslI	CAYNNNNRTG	2 cut(s)	138, 419
Msp20I	TGGCCA	1 cut(s)	805
MspI	CCGG	2 cut(s)	103, 173
MspR9I	CCNGG	2 cut(s)	104, 609
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	4 cut(s)	61, 67, 404, 425
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	4 cut(s)	249, 256, 592, 1055
NlaIV	GGNNCC	2 cut(s)	108, 982
NmuCI	GTSAC	3 cut(s)	125, 140, 410
NsbI	TGCGCA	1 cut(s)	266
NspI	RCATGY	4 cut(s)	550, 665, 812, 824
PagI	TCATGA	2 cut(s)	847, 1020
PciI	ACATGT	1 cut(s)	808
PciSI	GCTCTTC	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	857, 1017
PkrI	GCNGC	7 cut(s)	57, 60, 63, 171, 286, 297, 732
PleI	GAGTC	1 cut(s)	1078
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	1078
Ppu21I	YACGTR	1 cut(s)	113
PscI	ACATGT	1 cut(s)	808
Psp1406I	AACGTT	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	607
PspCI	CACGTG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	108, 982
PspPI	GGNCC	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	1055
RsaI	GTAC	2 cut(s)	474, 644
RsaNI	GTAC	2 cut(s)	473, 643
RseI	CAYNNNNRTG	2 cut(s)	138, 419
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	797, 816
SatI	GCNGC	7 cut(s)	56, 59, 62, 170, 285, 296, 731
Sau3AI	GATC	4 cut(s)	249, 256, 592, 1055
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	1079
ScrFI	CCNGG	2 cut(s)	104, 609
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	3 cut(s)	243, 394, 882
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	2 cut(s)	138, 419
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	5 cut(s)	288, 351, 711, 837, 911
SsiI	CCGC	3 cut(s)	15, 56, 59
StyD4I	CCNGG	2 cut(s)	102, 607
StyI	CCWWGG	2 cut(s)	82, 133
TaaI	ACNGT	4 cut(s)	29, 35, 677, 928
TaiI	ACGT	4 cut(s)	115, 231, 391, 641
TaqI	TCGA	4 cut(s)	198, 402, 1015, 1035
TasI	AATT	5 cut(s)	288, 351, 711, 837, 911
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	2 cut(s)	58, 61
TfiI	GAWTC	2 cut(s)	857, 1017
Tru1I	TTAA	2 cut(s)	797, 816
Tru9I	TTAA	2 cut(s)	797, 816
TscAI	CASTG	4 cut(s)	274, 426, 682, 1080
TseFI	GTSAC	3 cut(s)	125, 140, 410
TseI	GCWGC	5 cut(s)	61, 169, 284, 295, 730
Tsp45I	GTSAC	3 cut(s)	125, 140, 410
TspDTI	ATGAA	7 cut(s)	17, 104, 447, 836, 924, 1009, 1037
TspGWI	ACGGA	2 cut(s)	206, 973
TspRI	CASTG	4 cut(s)	274, 426, 682, 1080
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	2 cut(s)	351, 837
XceI	RCATGY	4 cut(s)	550, 665, 812, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.