Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014071.1

Orthogroup ID

OG0009348

Physical Location & Seq

Genomic Coordinates Reverse (-)

19558 .. 23959

Gene Structure 4402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014071.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgaactccaaccccgcatacaataacagtaacagtaacggctactatgcacagccgccgcagcaccagcgccagcaccaccaaggaatgaacagagttcgccggggaccacgtggcaggtcgcgtgacggccatggaagtgacattagggtttctgaggctaccaagcagccggaaggtgcgccttgcacggacttcgacatggcctatttccactcctacgcccacgttggcatccacgaagagatgatcaaggatcgtgtgcgcactgaaacttacagggcagcaattatgcagcaccagagttgtattgctggcaaagtggtagtggacgttggctgtggcacaggaattctctctatcttttgtgctcaagctggtgcaaaacgtgtatatgctgtcgatgcaagtgacattgcagtgcaggcaaatgaagttgtaaaagcaaacaatctatctgataccatcatcgtactacatgggcgagttgaggatgttgatattgatgaggaggttgatgttataatttcagagtggatgggatacatgcttctgtatgagagtatgcttggaagtgtcattacagccagagatcgctggctaaaacctggaggtcttatacttccttcaaatgcaacgttgtacatagcacctatcacacatgctgatagatacagtgaaagcattgatttctggcgcaatgtttatggaattgatatgtctgccatgctgcctttggcaaagcaatgtgcgtttgaagagccatgtgttgagacaatcgtggctccactacatgggtttgcattttggtttgacgttgaattcaatggacctgcaatagctctcacaaataatcatgcaccatcccaacttcctaacaatcatacagtggagggtcagcagaggaggaaacgggcaaatcccagtgatgcgttggtgctgtcgactgcacctgaggaccccccaacgcattggcaacagactgtgctatacttttatgacccaatagaggtggagcaagaccaactgattgaaggttccgttacattatcacaaagcaaagaaaatcgtcgattcatgaatatccatctcgaatatgcctcgggtggaagatcctttgtcaaagagtcagtgatgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_25 Methyltransf_31 PrmA

Protein Analysis

380

Amino Acids

42.54

Weight (kDa)

5.66

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20020 AT3G20020 AT3G20020
fragaria_vesca	FvH4_4g37250 FvH4_4g37250
malus_domestica	MD13G1002200.v1.1
prunus_persica	Prupe.1G350300_v2.0.a1 Prupe.1G350300_v2.0.a1
pyrus_communis	pycom13g00190 pycom16g00120
rosa_chinensis	RchiOBHm_Chr4g0447051
rosa_laevigata	RLG00000005609
rosa_multiflora	Rmu_co8488887.1_g000001 Rmu_sc0014071.1_g000006 Rmu_sc0019356.1_g000005
rosa_roxburghii	Rroxscaffold_5G00387370
rosa_rugosa	Rorug04G0377700
rosa_samantha	Rh4AG439000 Rh4BG447900 Rh4CG465000 Rh4DG446400
rosa_wichuraiana	Rw4G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
Acc16I	TGCGCA	1 cut(s)	266
Acc36I	ACCTGC	2 cut(s)	108, 841
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	944
AccII	CGCG	1 cut(s)	124
AciI	CCGC	3 cut(s)	15, 56, 59
AclI	AACGTT	1 cut(s)	638
AclWI	GGATC	2 cut(s)	264, 1107
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	351, 821
AcvI	CACGTG	1 cut(s)	113
AfaI	GTAC	2 cut(s)	474, 644
AfiI	CCNNNNNNNGG	2 cut(s)	794, 1009
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	5 cut(s)	630, 758, 821, 826, 1034
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	2 cut(s)	377, 842
AluI	AGCT	2 cut(s)	377, 842
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	2 cut(s)	264, 1107
Ama87I	CYCGRG	1 cut(s)	1102
AoxI	GGCC	2 cut(s)	130, 204
ApeKI	GCWGC	5 cut(s)	61, 169, 284, 295, 730
ApoI	RAATTY	2 cut(s)	351, 821
AspLEI	GCGC	4 cut(s)	72, 184, 267, 699
AspS9I	GGNCC	3 cut(s)	107, 830, 958
AsuC2I	CCSGG	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	1102
AvaII	GGWCC	3 cut(s)	107, 830, 958
AxyI	CCTNAGG	1 cut(s)	954
BarI	GAAGNNNNNNTAC	2 cut(s)	565, 597
BbrPI	CACGTG	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	5 cut(s)	73, 181, 296, 307, 717
BccI	CCATC	4 cut(s)	473, 532, 871, 1095
BceAI	ACGGC	2 cut(s)	55, 145
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	1 cut(s)	609
BciVI	GTATCC	1 cut(s)	536
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	767
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	2 cut(s)	108, 841
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	7 cut(s)	56, 59, 62, 170, 285, 296, 731
BlsI	GCNGC	7 cut(s)	57, 60, 63, 171, 286, 297, 732
Bme1390I	CCNGG	2 cut(s)	104, 609
Bme18I	GGWCC	3 cut(s)	107, 830, 958
BmeT110I	CYCGRG	1 cut(s)	1102
BmgT120I	GGNCC	3 cut(s)	107, 830, 958
BmiI	GGNNCC	4 cut(s)	108, 786, 960, 1039
BmrFI	CCNGG	2 cut(s)	104, 609
BmrI	ACTGGG	1 cut(s)	918
BmsI	GCATC	3 cut(s)	243, 394, 919
BmuI	ACTGGG	1 cut(s)	918
BpmI	CTGGAG	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	113
BsaJI	CCNNGG	4 cut(s)	82, 103, 133, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	794, 1009
Bse1I	ACTGG	1 cut(s)	924
Bse21I	CCTNAGG	1 cut(s)	954
Bse3DI	GCAATG	3 cut(s)	414, 706, 752
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	4 cut(s)	82, 103, 133, 1101
BseGI	GGATG	4 cut(s)	234, 499, 543, 863
BseLI	CCNNNNNNNGG	2 cut(s)	794, 1009
BseMI	GCAATG	3 cut(s)	414, 706, 752
BseMII	CTCAG	2 cut(s)	147, 945
BseNI	ACTGG	1 cut(s)	924
BseRI	GAGGAG	2 cut(s)	524, 919
BseXI	GCAGC	5 cut(s)	73, 181, 296, 307, 717
BsgI	GTGCAG	2 cut(s)	443, 933
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	132, 206
BsiHKAI	GWGCWC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	1102
BsiSI	CCGG	2 cut(s)	103, 173
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	794, 1009
BsmAI	GTCTC	1 cut(s)	767
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	132, 206
BsoBI	CYCGRG	1 cut(s)	1102
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	4 cut(s)	249, 256, 592, 1112
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	3 cut(s)	15, 56, 59
BspANI	GGCC	2 cut(s)	132, 206
BspCNI	CTCAG	2 cut(s)	148, 946
BspFNI	CGCG	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	1077
BspLI	GGNNCC	4 cut(s)	108, 786, 960, 1039
BspMI	ACCTGC	2 cut(s)	108, 841
BspPI	GGATC	2 cut(s)	264, 1107
BspQI	GCTCTTC	1 cut(s)	753
BsrDI	GCAATG	3 cut(s)	414, 706, 752
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	924
BssECI	CCNNGG	4 cut(s)	82, 103, 133, 1101
BssMI	GATC	4 cut(s)	249, 256, 592, 1112
BssT1I	CCWWGG	2 cut(s)	82, 133
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	5 cut(s)	29, 35, 677, 889, 985
Bst6I	CTCTTC	2 cut(s)	237, 753
BstAUI	TGTACA	1 cut(s)	642
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	4 cut(s)	74, 316, 426, 599
BstDEI	CTNAG	2 cut(s)	156, 954
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	4 cut(s)	234, 499, 543, 863
BstFNI	CGCG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	4 cut(s)	72, 184, 267, 699
BstKTI	GATC	4 cut(s)	252, 259, 595, 1115
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	4 cut(s)	249, 256, 592, 1112
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 67, 404, 425
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	2 cut(s)	550, 665
BstSCI	CCNGG	2 cut(s)	102, 607
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	5 cut(s)	73, 181, 296, 307, 717
BstX2I	RGATCY	1 cut(s)	1112
BstXI	CCANNNNNNTGG	1 cut(s)	972
BstYI	RGATCY	1 cut(s)	1112
Bsu36I	CCTNAGG	1 cut(s)	954
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	132, 206
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	4 cut(s)	234, 499, 543, 863
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	6 cut(s)	267, 426, 682, 894, 931, 1137
BveI	ACCTGC	2 cut(s)	108, 841
Cac8I	GCNNGC	4 cut(s)	74, 316, 426, 599
CciI	TCATGA	1 cut(s)	1077
CfoI	GCGC	4 cut(s)	72, 184, 267, 699
Cfr13I	GGNCC	3 cut(s)	107, 830, 958
Csp6I	GTAC	2 cut(s)	473, 643
CspCI	CAANNNNNGTGG	2 cut(s)	993, 1028
CviQI	GTAC	2 cut(s)	473, 643
DdeI	CTNAG	2 cut(s)	156, 954
DpnI	GATC	4 cut(s)	251, 258, 594, 1114
DpnII	GATC	4 cut(s)	249, 256, 592, 1112
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	237, 753
EarI	CTCTTC	2 cut(s)	237, 753
Eco130I	CCWWGG	2 cut(s)	82, 133
Eco47I	GGWCC	3 cut(s)	107, 830, 958
Eco72I	CACGTG	1 cut(s)	113
Eco81I	CCTNAGG	1 cut(s)	954
Eco88I	CYCGRG	1 cut(s)	1102
EcoO109I	RGGNCCY	1 cut(s)	958
EcoRI	GAATTC	2 cut(s)	351, 821
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	2 cut(s)	82, 133
ErhI	CCWWGG	2 cut(s)	82, 133
FaqI	GGGAC	1 cut(s)	120
FauI	CCCGC	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	944
Fnu4HI	GCNGC	7 cut(s)	56, 59, 62, 170, 285, 296, 731
FokI	GGATG	4 cut(s)	221, 506, 550, 850
Fsp4HI	GCNGC	7 cut(s)	56, 59, 62, 170, 285, 296, 731
FspAI	RTGCGCAY	1 cut(s)	266
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	4 cut(s)	71, 183, 266, 698
GluI	GCNGC	7 cut(s)	56, 59, 62, 170, 285, 296, 731
GsuI	CTGGAG	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	132, 206
HapII	CCGG	2 cut(s)	103, 173
HhaI	GCGC	4 cut(s)	72, 184, 267, 699
Hin6I	GCGC	4 cut(s)	70, 182, 265, 697
HinP1I	GCGC	4 cut(s)	70, 182, 265, 697
HincII	GTYRAC	1 cut(s)	945
HindII	GTYRAC	1 cut(s)	945
HinfI	GANTC	2 cut(s)	1074, 1127
HpaII	CCGG	2 cut(s)	103, 173
Hpy166II	GTNNAC	2 cut(s)	331, 945
Hpy188I	TCNGA	3 cut(s)	157, 460, 532
Hpy188III	TCNNGA	2 cut(s)	1078, 1091
Hpy8I	GTNNAC	2 cut(s)	331, 945
Hpy99I	CGWCG	1 cut(s)	1074
HpyAV	CCTTC	3 cut(s)	170, 636, 1028
HpyCH4III	ACNGT	5 cut(s)	29, 35, 677, 889, 985
HpyCH4IV	ACGT	6 cut(s)	112, 228, 333, 388, 638, 816
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 67, 404, 425
HpyF3I	CTNAG	2 cut(s)	156, 954
HpySE526I	ACGT	6 cut(s)	112, 228, 333, 388, 638, 816
HspAI	GCGC	4 cut(s)	70, 182, 265, 697
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	4 cut(s)	249, 256, 592, 1112
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	2 cut(s)	790, 1015
Lsp1109I	GCAGC	5 cut(s)	73, 181, 296, 307, 717
LweI	GCATC	3 cut(s)	243, 394, 919
MaeII	ACGT	6 cut(s)	112, 228, 333, 388, 638, 816
MaeIII	GTNAC	6 cut(s)	29, 35, 125, 140, 410, 1042
MalI	GATC	4 cut(s)	251, 258, 594, 1114
MboI	GATC	4 cut(s)	249, 256, 592, 1112
MboII	GAAGA	3 cut(s)	254, 770, 1122
MflI	RGATCY	1 cut(s)	1112
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	5 cut(s)	288, 351, 525, 711, 821
MlyI	GAGTC	1 cut(s)	1136
MmeI	TCCRAC	1 cut(s)	33
MslI	CAYNNNNRTG	2 cut(s)	138, 419
MspI	CCGG	2 cut(s)	103, 173
MspR9I	CCNGG	2 cut(s)	104, 609
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	4 cut(s)	61, 67, 404, 425
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	4 cut(s)	249, 256, 592, 1112
NlaIV	GGNNCC	4 cut(s)	108, 786, 960, 1039
NmuCI	GTSAC	3 cut(s)	125, 140, 410
NsbI	TGCGCA	1 cut(s)	266
NspI	RCATGY	2 cut(s)	550, 665
PagI	TCATGA	1 cut(s)	1077
PciSI	GCTCTTC	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	1074
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	7 cut(s)	57, 60, 63, 171, 286, 297, 732
PleI	GAGTC	1 cut(s)	1135
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	1135
Ppu21I	YACGTR	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	958
PsiI	TTATAA	1 cut(s)	524
Psp1406I	AACGTT	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	1 cut(s)	607
PspCI	CACGTG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	4 cut(s)	108, 786, 960, 1039
PspPI	GGNCC	3 cut(s)	107, 830, 958
PspPPI	RGGWCCY	1 cut(s)	958
PsuI	RGATCY	1 cut(s)	1112
RsaI	GTAC	2 cut(s)	474, 644
RsaNI	GTAC	2 cut(s)	473, 643
RseI	CAYNNNNRTG	2 cut(s)	138, 419
SalI	GTCGAC	1 cut(s)	943
SapI	GCTCTTC	1 cut(s)	753
SatI	GCNGC	7 cut(s)	56, 59, 62, 170, 285, 296, 731
Sau3AI	GATC	4 cut(s)	249, 256, 592, 1112
Sau96I	GGNCC	3 cut(s)	107, 830, 958
SchI	GAGTC	1 cut(s)	1136
ScrFI	CCNGG	2 cut(s)	104, 609
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	3 cut(s)	243, 394, 919
SinI	GGWCC	3 cut(s)	107, 830, 958
SmiMI	CAYNNNNRTG	2 cut(s)	138, 419
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	5 cut(s)	288, 351, 525, 711, 821
SsiI	CCGC	3 cut(s)	15, 56, 59
StyD4I	CCNGG	2 cut(s)	102, 607
StyI	CCWWGG	2 cut(s)	82, 133
TaaI	ACNGT	5 cut(s)	29, 35, 677, 889, 985
TaiI	ACGT	6 cut(s)	115, 231, 336, 391, 641, 819
TaqI	TCGA	5 cut(s)	198, 402, 944, 1072, 1092
TasI	AATT	5 cut(s)	288, 351, 525, 711, 821
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	2 cut(s)	58, 61
TfiI	GAWTC	1 cut(s)	1074
TscAI	CASTG	6 cut(s)	274, 426, 682, 894, 931, 1137
TseFI	GTSAC	3 cut(s)	125, 140, 410
TseI	GCWGC	5 cut(s)	61, 169, 284, 295, 730
Tsp45I	GTSAC	3 cut(s)	125, 140, 410
TspDTI	ATGAA	5 cut(s)	17, 104, 447, 1066, 1094
TspGWI	ACGGA	2 cut(s)	206, 1030
TspRI	CASTG	6 cut(s)	274, 426, 682, 894, 931, 1137
Van91I	CCANNNNNTGG	1 cut(s)	794
VpaK11BI	GGWCC	3 cut(s)	107, 830, 958
XapI	RAATTY	2 cut(s)	351, 821
XceI	RCATGY	2 cut(s)	550, 665
XcmI	CCANNNNNNNNNTGG	2 cut(s)	733, 931
XmiI	GTMKAC	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.