Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009348

Physical Location & Seq

Genomic Coordinates Forward (+)

73066311 .. 73067886

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG439000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTGCCTTTGGCAAAGCAATGTGCGTTTGAAGAGCCATGTGTTGAGACAATCGTGGGTGAGAATGTTTTAACATGGCCACATGTGGTTAAGCATGTGGACTGCCATAAAATTTCACTTCATGAGCTGGAATCTGTTACAACAAGCTATAAGTTCAAATCAATGATGCGAGCTCCACTACATGGGTTTGCATTTTGGTTTGACGTTGAATTCAATGGACCTGCAATAGCTCTCACAAATAATCATGCACCATCCCAACTTCCTAACAATCATACAGTGGAGGGTCAGCAGAGGAGGAAACGGGCAAATCCCAGTGATGCGTTGGTGCTGTCGACTGCACCTGAGGACCCCCCAACGCATTGGCAACAGACTGTGCTATACTTTTATGACCCAATAGAGGTGGAGCAAGATCAACTGATTGAAGGTTCCGTTACATTATCACAAAGCAAAGAAAATCGTCGATTCATGAATATCCATCTCGAATATGCCTCGGGTGGAAGATCCTTTGTCAAAGAGTCAGTGATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_25 Methyltransf_31 PrmA

Protein Analysis

176

Amino Acids

20.08

Weight (kDa)

5.97

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRMT_C	PF22528	6 - 74	6.1e-09	Arginine methyltransferase oligomerization subdomain
PRMT_C	PF22528	107 - 164	1.1e-15	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20020 AT3G20020 AT3G20020
fragaria_vesca	FvH4_4g37250 FvH4_4g37250
malus_domestica	MD13G1002200.v1.1
prunus_persica	Prupe.1G350300_v2.0.a1 Prupe.1G350300_v2.0.a1
pyrus_communis	pycom13g00190 pycom16g00120
rosa_chinensis	RchiOBHm_Chr4g0447051
rosa_laevigata	RLG00000005609
rosa_multiflora	Rmu_co8488887.1_g000001 Rmu_sc0014071.1_g000006 Rmu_sc0019356.1_g000005
rosa_roxburghii	Rroxscaffold_5G00387370
rosa_rugosa	Rorug04G0377700
rosa_samantha	Rh4AG439000 Rh4BG447900 Rh4CG465000 Rh4DG446400
rosa_wichuraiana	Rw4G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	111, 209
AfiI	CCNNNNNNNGG	2 cut(s)	182, 397
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	5 cut(s)	32, 157, 209, 214, 422
AluBI	AGCT	4 cut(s)	127, 147, 173, 230
AluI	AGCT	4 cut(s)	127, 147, 173, 230
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	495
Ama87I	CYCGRG	1 cut(s)	490
AoxI	GGCC	1 cut(s)	77
ApoI	RAATTY	2 cut(s)	111, 209
AspS9I	GGNCC	2 cut(s)	218, 346
AsuHPI	GGTGA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	490
AvaII	GGWCC	2 cut(s)	218, 346
AxyI	CCTNAGG	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	175
BccI	CCATC	2 cut(s)	259, 483
BcoDI	GTCTC	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	229
Bme18I	GGWCC	2 cut(s)	218, 346
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	218, 346
BmiI	GGNNCC	2 cut(s)	348, 427
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	156, 307
BmuI	ACTGGG	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 397
Bse1I	ACTGG	1 cut(s)	312
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	182, 397
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	307
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	490
BslI	CCNNNNNNNGG	2 cut(s)	182, 397
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	409, 500
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	2 cut(s)	121, 465
BspLI	GGNNCC	2 cut(s)	348, 427
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	495
BspQI	GCTCTTC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	409, 500
Bst4CI	ACNGT	2 cut(s)	277, 373
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	412, 503
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	409, 500
BstNSI	RCATGY	2 cut(s)	86, 98
BstX2I	RGATCY	1 cut(s)	500
BstXI	CCANNNNNNTGG	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	500
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	251
BtsIMutI	CAGTG	3 cut(s)	282, 319, 525
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	171
CciI	TCATGA	2 cut(s)	121, 465
Cfr13I	GGNCC	2 cut(s)	218, 346
CspCI	CAANNNNNGTGG	2 cut(s)	381, 416
CviAII	CATG	8 cut(s)	39, 75, 83, 95, 122, 182, 245, 466
CviJI	RGCY	6 cut(s)	37, 79, 127, 147, 173, 230
CviKI_1	RGCY	6 cut(s)	37, 79, 127, 147, 173, 230
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	411, 502
DpnII	GATC	2 cut(s)	409, 500
EaeI	YGGCCR	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	218, 346
Eco53kI	GAGCTC	1 cut(s)	173
Eco81I	CCTNAGG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	8 cut(s)	42, 78, 86, 98, 125, 185, 248, 469
FatI	CATG	8 cut(s)	38, 74, 82, 94, 121, 181, 244, 465
FblI	GTMKAC	1 cut(s)	332
FokI	GGATG	1 cut(s)	238
FriOI	GRGCYC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	79
Hin1II	CATG	8 cut(s)	42, 78, 86, 98, 125, 185, 248, 469
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	3 cut(s)	131, 462, 515
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	100, 333
Hpy188III	TCNNGA	3 cut(s)	122, 466, 479
Hpy8I	GTNNAC	2 cut(s)	100, 333
Hpy99I	CGWCG	1 cut(s)	462
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	2 cut(s)	277, 373
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	4 cut(s)	191, 224, 248, 338
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	8 cut(s)	42, 78, 86, 98, 125, 185, 248, 469
Kzo9I	GATC	2 cut(s)	409, 500
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	178, 403
LpnPI	CCDG	4 cut(s)	113, 234, 325, 354
LweI	GCATC	2 cut(s)	156, 307
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	136, 430
MalI	GATC	2 cut(s)	411, 502
MboI	GATC	2 cut(s)	409, 500
MboII	GAAGA	2 cut(s)	44, 510
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	79
MluCI	AATT	2 cut(s)	111, 209
MluNI	TGGCCA	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	7 cut(s)	274, 285, 288, 337, 391, 499, 519
Mox20I	TGGCCA	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	79
MseI	TTAA	2 cut(s)	71, 90
Msp20I	TGGCCA	1 cut(s)	79
NdeII	GATC	2 cut(s)	409, 500
NlaIII	CATG	8 cut(s)	42, 78, 86, 98, 125, 185, 248, 469
NlaIV	GGNNCC	2 cut(s)	348, 427
NspI	RCATGY	2 cut(s)	86, 98
PagI	TCATGA	2 cut(s)	121, 465
PciI	ACATGT	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	131, 462
PflMI	CCANNNNNTGG	1 cut(s)	182
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
PpuMI	RGGWCCY	1 cut(s)	346
PscI	ACATGT	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	346
PspN4I	GGNNCC	2 cut(s)	348, 427
PspPI	GGNCC	2 cut(s)	218, 346
PspPPI	RGGWCCY	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	175
SalI	GTCGAC	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	71, 90
Sau3AI	GATC	2 cut(s)	409, 500
Sau96I	GGNCC	2 cut(s)	218, 346
SchI	GAGTC	1 cut(s)	524
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	156, 307
SinI	GGWCC	2 cut(s)	218, 346
Sse9I	AATT	2 cut(s)	111, 209
SstI	GAGCTC	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	277, 373
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	332, 460, 480
TasI	AATT	2 cut(s)	111, 209
TfiI	GAWTC	2 cut(s)	131, 462
Tru1I	TTAA	2 cut(s)	71, 90
Tru9I	TTAA	2 cut(s)	71, 90
TscAI	CASTG	3 cut(s)	282, 319, 525
TspDTI	ATGAA	3 cut(s)	110, 454, 482
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	3 cut(s)	282, 319, 525
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	218, 346
XapI	RAATTY	2 cut(s)	111, 209
XceI	RCATGY	2 cut(s)	86, 98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.