Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009348

Physical Location & Seq

Genomic Coordinates Forward (+)

64585874 .. 64591075

Gene Structure 5202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG446400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAACTCCAACCCCGCATACAGTAACAGTAACGGCTACTATGCACAGCCGCCGCAGCACCAGCGCCAGCACCACCACCACCAAGGAATGAACAGAGTTCGCCGGGGACCACGTGGCAGGTCACGTGACGGCCATGGAAGTGACATTAGGGTTTCTGAGGCTACCAAGCAGCCGGAAGGTGCGCCTTGCACGGACTTCGACATGGCCTATTTCCACTCCTACGCCCACGTTGGCATCCACGAAGAGATGATCAAGGATCGTGTGCGCACTGAAACTTACAGGGCAGCAATTATGCAGCACCAGAGTTGTATTGCTGGCAAAGTGGTAGTGGACGTTGGCTGTGGCACAGGAATTCTCTCTATCTTTTGCGCTCAAGCTGGAGCAAAACGTGTATATGCTGTCGATGCAAGTGACATTGCAGTGCAGGCAAATGAAGTTGTAAAAGCAAACAATCTATCTGATACCATCATCGTACTACATGGGCGAGTTGAGGATGTTGATATTGATGAGGAGGTTGATGTTATAATTTCAGAGTGGATGGGATACATGCTTCTGTATGAGAGTATGCTTGGAAGTGTCATTACAGCCAGAGATCGCTGGCTAAAACCTGGAGGTCTTATACTTCCTTCAAATGCAACGTTGTACATAGCACCTATCACACATGCTGATAGATACAGTGAAAGCATTGATTTCTGGCGCAATGTTTATGGAATTGATATGTCTGCCATGTTGCCTTTGGCAAAGCAATGTGCGTTTGAAGAGCCATGTGTTGAGACAATCGTGGGTGAGAATGTTTTAACATGGCCACATGTGGTTAAGCATGTGGACTGCCATAAAATTTCACTTCATGAGCTGGAATCTGTTACAACAAGCTATAAGTTCAAATCAATGATGCGAGGTCTCTCTCTCTCTCTGGCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_25 Methyltransf_31 PrmA

Protein Analysis

307

Amino Acids

34.27

Weight (kDa)

6.13

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_9	PF08003	87 - 210	6.4e-07	Protein of unknown function (DUF1698)
TehB	PF03848	90 - 208	3.8e-07	Tellurite resistance protein TehB
TRM5-TYW2_MTfase	PF02475	94 - 183	7e-08	TRM5/TYW2 methyltransferase domain
Methyltransf_23	PF13489	103 - 212	4.7e-07	Methyltransferase domain
PrmA	PF06325	105 - 179	1.6e-13	Ribosomal protein L11 methyltransferase (PrmA)
MTS	PF05175	105 - 177	6.4e-08	Methyltransferase small domain
Methyltransf_31	PF13847	106 - 210	2.2e-07	Methyltransferase domain
Methyltransf_25	PF13649	109 - 205	4.6e-12	Methyltransferase domain
Methyltransf_11	PF08241	110 - 207	3.4e-10	Methyltransferase domain
PRMT_C	PF22528	211 - 295	2.2e-14	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20020 AT3G20020 AT3G20020
fragaria_vesca	FvH4_4g37250 FvH4_4g37250
malus_domestica	MD13G1002200.v1.1
prunus_persica	Prupe.1G350300_v2.0.a1 Prupe.1G350300_v2.0.a1
pyrus_communis	pycom13g00190 pycom16g00120
rosa_chinensis	RchiOBHm_Chr4g0447051
rosa_laevigata	RLG00000005609
rosa_multiflora	Rmu_co8488887.1_g000001 Rmu_sc0014071.1_g000006 Rmu_sc0019356.1_g000005
rosa_roxburghii	Rroxscaffold_5G00387370
rosa_rugosa	Rorug04G0377700
rosa_samantha	Rh4AG439000 Rh4BG447900 Rh4CG465000 Rh4DG446400
rosa_wichuraiana	Rw4G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
Acc16I	TGCGCA	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	108
AciI	CCGC	3 cut(s)	15, 50, 53
AclI	AACGTT	1 cut(s)	638
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	3 cut(s)	130, 803, 915
AcsI	RAATTY	2 cut(s)	351, 837
AcvI	CACGTG	2 cut(s)	113, 125
AfaI	GTAC	2 cut(s)	474, 644
AflIII	ACRYGT	2 cut(s)	388, 808
AgsI	TTSAA	3 cut(s)	630, 758, 883
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	3 cut(s)	377, 853, 873
AluI	AGCT	3 cut(s)	377, 853, 873
Alw26I	GTCTC	2 cut(s)	767, 905
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	4 cut(s)	130, 204, 803, 915
ApeKI	GCWGC	4 cut(s)	55, 169, 284, 295
ApoI	RAATTY	2 cut(s)	351, 837
AspLEI	GCGC	5 cut(s)	66, 184, 267, 371, 699
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	797
AvaII	GGWCC	1 cut(s)	107
BalI	TGGCCA	2 cut(s)	805, 917
BarI	GAAGNNNNNNTAC	2 cut(s)	565, 597
BbrPI	CACGTG	2 cut(s)	113, 125
BbvI	GCAGC	4 cut(s)	67, 181, 296, 307
BccI	CCATC	2 cut(s)	473, 532
BceAI	ACGGC	2 cut(s)	49, 145
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	1 cut(s)	609
BciVI	GTATCC	1 cut(s)	536
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	767, 905
BfoI	RGCGCY	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	6 cut(s)	50, 53, 56, 170, 285, 296
BlsI	GCNGC	6 cut(s)	51, 54, 57, 171, 286, 297
Bme1390I	CCNGG	2 cut(s)	104, 609
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	104, 609
BmsI	GCATC	3 cut(s)	243, 394, 882
BpmI	CTGGAG	2 cut(s)	399, 630
BpuEI	CTTGAG	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	104
BsaAI	YACGTR	2 cut(s)	113, 125
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	3 cut(s)	82, 103, 133
Bse3DI	GCAATG	3 cut(s)	414, 706, 752
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	3 cut(s)	82, 103, 133
BseGI	GGATG	3 cut(s)	234, 499, 543
BseMI	GCAATG	3 cut(s)	414, 706, 752
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	4 cut(s)	67, 181, 296, 307
BsgI	GTGCAG	1 cut(s)	443
BshFI	GGCC	4 cut(s)	132, 206, 805, 917
BsiSI	CCGG	2 cut(s)	103, 173
BslFI	GGGAC	1 cut(s)	120
BsmAI	GTCTC	2 cut(s)	767, 905
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	4 cut(s)	132, 206, 805, 917
Bso31I	GGTCTC	1 cut(s)	905
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	3 cut(s)	249, 256, 592
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	3 cut(s)	15, 50, 53
BspANI	GGCC	4 cut(s)	132, 206, 805, 917
BspCNI	CTCAG	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	1 cut(s)	108
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	753
BspTNI	GGTCTC	1 cut(s)	905
BsrDI	GCAATG	3 cut(s)	414, 706, 752
BsrGI	TGTACA	1 cut(s)	642
BssECI	CCNNGG	3 cut(s)	82, 103, 133
BssMI	GATC	3 cut(s)	249, 256, 592
BssT1I	CCWWGG	2 cut(s)	82, 133
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	3 cut(s)	23, 29, 677
Bst6I	CTCTTC	2 cut(s)	237, 753
BstAUI	TGTACA	1 cut(s)	642
BstBAI	YACGTR	2 cut(s)	113, 125
BstC8I	GCNNGC	4 cut(s)	68, 316, 426, 599
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	3 cut(s)	234, 499, 543
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	5 cut(s)	66, 184, 267, 371, 699
BstKTI	GATC	3 cut(s)	252, 259, 595
BstMAI	GTCTC	2 cut(s)	767, 905
BstMBI	GATC	3 cut(s)	249, 256, 592
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 61, 404, 425
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	4 cut(s)	550, 665, 812, 824
BstSCI	CCNGG	2 cut(s)	102, 607
BstV1I	GCAGC	4 cut(s)	67, 181, 296, 307
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	4 cut(s)	132, 206, 805, 917
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	234, 499, 543
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	267, 426, 682
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	4 cut(s)	68, 316, 426, 599
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	5 cut(s)	66, 184, 267, 371, 699
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	473, 643
CviQI	GTAC	2 cut(s)	473, 643
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	251, 258, 594
DpnII	GATC	3 cut(s)	249, 256, 592
EaeI	YGGCCR	3 cut(s)	130, 803, 915
Eam1104I	CTCTTC	2 cut(s)	237, 753
EarI	CTCTTC	2 cut(s)	237, 753
Eco130I	CCWWGG	2 cut(s)	82, 133
Eco31I	GGTCTC	1 cut(s)	905
Eco47I	GGWCC	1 cut(s)	107
Eco72I	CACGTG	2 cut(s)	113, 125
EcoRI	GAATTC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	2 cut(s)	82, 133
ErhI	CCWWGG	2 cut(s)	82, 133
FaqI	GGGAC	1 cut(s)	120
FauI	CCCGC	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	6 cut(s)	50, 53, 56, 170, 285, 296
FokI	GGATG	3 cut(s)	221, 506, 550
Fsp4HI	GCNGC	6 cut(s)	50, 53, 56, 170, 285, 296
FspAI	RTGCGCAY	1 cut(s)	266
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	5 cut(s)	65, 183, 266, 370, 698
GluI	GCNGC	6 cut(s)	50, 53, 56, 170, 285, 296
GsuI	CTGGAG	2 cut(s)	399, 630
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	4 cut(s)	132, 206, 805, 917
HapII	CCGG	2 cut(s)	103, 173
HhaI	GCGC	5 cut(s)	66, 184, 267, 371, 699
Hin6I	GCGC	5 cut(s)	64, 182, 265, 369, 697
HinP1I	GCGC	5 cut(s)	64, 182, 265, 369, 697
HinfI	GANTC	1 cut(s)	857
HpaII	CCGG	2 cut(s)	103, 173
HphI	GGTGA	1 cut(s)	797
Hpy166II	GTNNAC	2 cut(s)	331, 826
Hpy188I	TCNGA	3 cut(s)	157, 460, 532
Hpy188III	TCNNGA	1 cut(s)	848
Hpy8I	GTNNAC	2 cut(s)	331, 826
HpyAV	CCTTC	2 cut(s)	170, 636
HpyCH4III	ACNGT	3 cut(s)	23, 29, 677
HpyCH4IV	ACGT	6 cut(s)	112, 124, 228, 333, 388, 638
HpyCH4V	TGCA	7 cut(s)	44, 189, 295, 407, 419, 424, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 61, 404, 425
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	6 cut(s)	112, 124, 228, 333, 388, 638
HspAI	GCGC	5 cut(s)	64, 182, 265, 369, 697
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	249, 256, 592
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	4 cut(s)	67, 181, 296, 307
LweI	GCATC	3 cut(s)	243, 394, 882
MaeII	ACGT	6 cut(s)	112, 124, 228, 333, 388, 638
MaeIII	GTNAC	7 cut(s)	23, 29, 120, 125, 140, 410, 862
MalI	GATC	3 cut(s)	251, 258, 594
MboI	GATC	3 cut(s)	249, 256, 592
MboII	GAAGA	2 cut(s)	254, 770
MlsI	TGGCCA	2 cut(s)	805, 917
MluCI	AATT	5 cut(s)	288, 351, 525, 711, 837
MluNI	TGGCCA	2 cut(s)	805, 917
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	151, 484, 502, 505, 605, 890
Mox20I	TGGCCA	2 cut(s)	805, 917
MscI	TGGCCA	2 cut(s)	805, 917
MseI	TTAA	2 cut(s)	797, 816
MslI	CAYNNNNRTG	2 cut(s)	138, 419
Msp20I	TGGCCA	2 cut(s)	805, 917
MspI	CCGG	2 cut(s)	103, 173
MspR9I	CCNGG	2 cut(s)	104, 609
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	4 cut(s)	55, 61, 404, 425
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	3 cut(s)	249, 256, 592
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	4 cut(s)	120, 125, 140, 410
NsbI	TGCGCA	1 cut(s)	266
NspI	RCATGY	4 cut(s)	550, 665, 812, 824
PagI	TCATGA	1 cut(s)	847
PciI	ACATGT	1 cut(s)	808
PciSI	GCTCTTC	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	857
PkrI	GCNGC	6 cut(s)	51, 54, 57, 171, 286, 297
PmaCI	CACGTG	2 cut(s)	113, 125
PmlI	CACGTG	2 cut(s)	113, 125
Ppu21I	YACGTR	2 cut(s)	113, 125
PscI	ACATGT	1 cut(s)	808
PsiI	TTATAA	1 cut(s)	524
Psp1406I	AACGTT	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	607
PspCI	CACGTG	2 cut(s)	113, 125
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	107
RsaI	GTAC	2 cut(s)	474, 644
RsaNI	GTAC	2 cut(s)	473, 643
RseI	CAYNNNNRTG	2 cut(s)	138, 419
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	797, 816
SatI	GCNGC	6 cut(s)	50, 53, 56, 170, 285, 296
Sau3AI	GATC	3 cut(s)	249, 256, 592
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	104, 609
SfaNI	GCATC	3 cut(s)	243, 394, 882
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	2 cut(s)	138, 419
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	5 cut(s)	288, 351, 525, 711, 837
SsiI	CCGC	3 cut(s)	15, 50, 53
StyD4I	CCNGG	2 cut(s)	102, 607
StyI	CCWWGG	2 cut(s)	82, 133
TaaI	ACNGT	3 cut(s)	23, 29, 677
TaiI	ACGT	6 cut(s)	115, 127, 231, 336, 391, 641
TaqI	TCGA	2 cut(s)	198, 402
TasI	AATT	5 cut(s)	288, 351, 525, 711, 837
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	2 cut(s)	52, 55
TfiI	GAWTC	1 cut(s)	857
Tru1I	TTAA	2 cut(s)	797, 816
Tru9I	TTAA	2 cut(s)	797, 816
TscAI	CASTG	3 cut(s)	274, 426, 682
TseFI	GTSAC	4 cut(s)	120, 125, 140, 410
TseI	GCWGC	4 cut(s)	55, 169, 284, 295
Tsp45I	GTSAC	4 cut(s)	120, 125, 140, 410
TspDTI	ATGAA	4 cut(s)	17, 104, 447, 836
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	3 cut(s)	274, 426, 682
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	2 cut(s)	351, 837
XceI	RCATGY	4 cut(s)	550, 665, 812, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.