Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009348

Physical Location & Seq

Genomic Coordinates Reverse (-)

65544 .. 65822

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCAAAACGTCAAACGGCCCTTTCTTTCTTTGTCTCTCGTGGATTGGGTTTTGGGAGTGAGCAAGCGACGAGCGAGCAGGCGAGTTGAAACCAAAACAATGAACTTGACCCCGGCTTACAGTAACGGCTACCACAACCAGCAGCAACAACAGCCACAGGGGATGAGCCAGAGGGATAGAGTCCGCCGGGGAACACTTGCCAGGTCACGTGAGCTCAGAGACAACTTCGGCAGTGGTGGTAATTTTGGCGGGCTTAGGGTTTCTGAGCCCAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_25 Methyltransf_31 PrmA

Protein Analysis

93

Amino Acids

10.5

Weight (kDa)

11.67

Isoelectric Point (pI)

73.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20020 AT3G20020 AT3G20020
fragaria_vesca	FvH4_4g37250 FvH4_4g37250
malus_domestica	MD13G1002200.v1.1
prunus_persica	Prupe.1G350300_v2.0.a1 Prupe.1G350300_v2.0.a1
pyrus_communis	pycom13g00190 pycom16g00120
rosa_chinensis	RchiOBHm_Chr4g0447051
rosa_laevigata	RLG00000005609
rosa_multiflora	Rmu_co8488887.1_g000001 Rmu_sc0014071.1_g000006 Rmu_sc0019356.1_g000005
rosa_roxburghii	Rroxscaffold_5G00387370
rosa_rugosa	Rorug04G0377700
rosa_samantha	Rh4AG439000 Rh4BG447900 Rh4CG465000 Rh4DG446400
rosa_wichuraiana	Rw4G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	184, 249
AcvI	CACGTG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	39, 213
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	2 cut(s)	113, 188
BanII	GRGCYC	2 cut(s)	216, 270
BauI	CACGAG	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	154
BceAI	ACGGC	2 cut(s)	32, 142
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	2 cut(s)	113, 188
BcoDI	GTCTC	2 cut(s)	39, 213
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	3 cut(s)	113, 188, 202
BmgT120I	GGNCC	1 cut(s)	18
BmrFI	CCNGG	3 cut(s)	113, 188, 202
Bpu10I	CCTNAGC	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	113, 188
BsaAI	YACGTR	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	111, 187
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	111, 187
BseGI	GGATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	229, 255
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	113, 187
BsmAI	GTCTC	2 cut(s)	39, 213
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	2 cut(s)	216, 270
BspACI	CCGC	2 cut(s)	184, 249
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	2 cut(s)	228, 256
BssECI	CCNNGG	2 cut(s)	111, 187
BssSI	CACGAG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	4 cut(s)	65, 76, 80, 251
BstDEI	CTNAG	3 cut(s)	215, 254, 264
BstF5I	GGATG	1 cut(s)	168
BstMAI	GTCTC	2 cut(s)	39, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	3 cut(s)	111, 186, 200
BstV1I	GCAGC	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	4 cut(s)	65, 76, 80, 251
Cfr13I	GGNCC	1 cut(s)	18
CviJI	RGCY	8 cut(s)	19, 116, 129, 154, 168, 214, 253, 268
CviKI_1	RGCY	8 cut(s)	19, 116, 129, 154, 168, 214, 253, 268
DdeI	CTNAG	3 cut(s)	215, 254, 264
EciI	GGCGGA	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	216, 270
Eco53kI	GAGCTC	1 cut(s)	214
Eco72I	CACGTG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	200
EcoT38I	GRGCYC	2 cut(s)	216, 270
FauI	CCCGC	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	2 cut(s)	216, 270
Fsp4HI	GCNGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	2 cut(s)	113, 187
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	2 cut(s)	113, 187
Hpy188I	TCNGA	2 cut(s)	218, 265
Hpy99I	CGWCG	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	9, 208
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	215, 254, 264
HpySE526I	ACGT	2 cut(s)	9, 208
LpnPI	CCDG	8 cut(s)	64, 126, 143, 152, 182, 187, 200, 214
Lsp1109I	GCAGC	1 cut(s)	154
MaeII	ACGT	2 cut(s)	9, 208
MaeIII	GTNAC	2 cut(s)	122, 204
MhlI	GDGCHC	2 cut(s)	216, 270
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	189
MnlI	CCTC	1 cut(s)	165
MspI	CCGG	2 cut(s)	113, 187
MspR9I	CCNGG	3 cut(s)	113, 188, 202
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	2 cut(s)	113, 188
NmuCI	GTSAC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	188
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	200
PspCI	CACGTG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	216
SatI	GCNGC	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	3 cut(s)	113, 188, 202
SduI	GDGCHC	2 cut(s)	216, 270
SetI	ASST	4 cut(s)	12, 206, 211, 216
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	2 cut(s)	184, 249
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	111, 186, 200
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	2 cut(s)	12, 211
TasI	AATT	1 cut(s)	241
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.