MD13G1014200.v1.1

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
880994 .. 893134
12141 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1014200.v1.1.491

Sequence Viewer

Length: 1512 bp
ATGGCGACGGTGACGGCATGGCAGTTACCGTACAGAATCTTGGCGGTGGCGGAGGAAGAAGAAGATAGCTCGTCGGATCCGACTAACGCGGTGGCGTTCTTGGGGTTGTGTTTGGTGTTAGGAATCGCCTGCAGGCATCTGCTGCTTGGTACCAGAGTTCCCTACACCGTCGCTCTGCTCATCCTTGGCATTGGCCTCGGCTCCATAGGCCTCTCTCTCACTCTCTTCCATTTCTTCTTCTTGTGTATAGTACAAATGATGATACTAGCTGGTCCGGGTGTTCTAATATCAACCTTTGTCCTTGGATCTGCTTTGAAGCTCACTTTCCCTTATGACTGGAGTTGGAAAACATCACTGTTGCTTGGGGGGCTTCTTAGCGCCACTGATCCTGTGGCTGTTGTTGCTCTGTTAAAAGAGCTTGGTGCTAGCAAAAAGCTGAGTACGATAATTGAAGGAGAATCCTTGATGAATGATGGGACAGCAATTGTGGTGTACCAGCTATTTTATCAGATGGTCCTTGGAAAGAGCTATGACTGGGCCGCCATAATTAAATTTCTATCTCAAGTCACATTTGGAGCTGTAGGCATTGGTCTTGCTTTTGGCATAGTATCTGTACTCTGGCTCGGGTTTATTTTCAATGACACCGTGATAGAGATCACACTAACACTTGCTGTCAGCTATGTTGCTTACTTCACTGCTCAAGAGGGTGCGGACGTGTCTGGTGTCTTGACGGTGATGACTTTAGGAATGTTTTACGCTGGAGTTGCAAGGACAGCTTTTAAGGGTGAAAGCCAACAAAGTTTACATCATTTCTGGGAAATGGTTGCTTATATTGCTAATACCTTAATTTTCATCTTGAGTGGAGTTGTTATAGCTGAAGGTGTTCTTAGCGGTGAAAATGTTTTTGATCATGGAAAATCTTGGTTCTACCTCATTCTTCTCTATGTTTACGTTCAAGTTTCCCGGTTCATAGTTGTTGCAGTTTCATTTCCCCTTCTCCGGTATTTTGGCTATGGTTTGGACTGGAAAGAGGCTATAATCCTTATATGGTCAGGTCTACGAGGGGCTGTAGCGTTGTCACTTTCACTGTCAAAAACTAGTGACAGTTCTGCACTTATCAGTTCTGATACCGGAGTCCTGTTTGTTTTTTTCACTGGTGGAATTGTCTTTTTGACACTAATTGTGAATGGTTCCACCACACAATTCATTTTACGCCTTCTAGATCTGGACAAGCTATCAGCAGCTAAGAGGCGCGTGCTGGAGTACACAAAATATGAAATGTTGAACAAAGCATTAGAGGCTTTTGGCGATCTTGGAGATGACGAGGAGTTGGGACCTGCTGACTGGCCAACTGTGAAAAGATATATTGCAAGCTTAAATGACATTGACACCGAACCTGTACACCCTCACAAGGCATCAGAAAGTGGCAATGATCCGCATCTTACAAATTTGAAGGATATACGTGAACGTCTTTTGAATGGTAAATTTAGCAACATATTTCAGTCCCAGTAA

Protein Analysis

504

Amino Acids

54.97

Weight (kDa)

5.17

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 82 - 405 2.5e-52 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1345
Acc65I GGTACC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 1057
AccII CGCG 2 cut(s) 89, 1254
AciI CCGC 7 cut(s) 44, 50, 89, 540, 710, 891, 1436
AclWI GGATC 5 cut(s) 71, 84, 313, 380, 1427
AcoI YGGCCR 1 cut(s) 1346
AcsI RAATTY 3 cut(s) 551, 1447, 1484
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 8 cut(s) 32, 151, 252, 442, 494, 615, 1265, 1401
AfiI CCNNNNNNNGG 2 cut(s) 999, 1411
AflIII ACRYGT 1 cut(s) 714
AgsI TTSAA 7 cut(s) 316, 452, 637, 956, 1285, 1453, 1477
AhlI ACTAGT 1 cut(s) 1097
AjiI CACGTC 1 cut(s) 715
AlwI GGATC 5 cut(s) 71, 84, 313, 380, 1427
Ama87I CYCGRG 1 cut(s) 623
AoxI GGCC 4 cut(s) 193, 208, 537, 1346
ApeKI GCWGC 2 cut(s) 142, 1241
ApoI RAATTY 3 cut(s) 551, 1447, 1484
Asp700I GAANNNNTTC 1 cut(s) 882
Asp718I GGTACC 1 cut(s) 149
AspLEI GCGC 2 cut(s) 380, 1254
AspS9I GGNCC 4 cut(s) 272, 514, 537, 1334
AsuC2I CCSGG 2 cut(s) 276, 964
AsuHPI GGTGA 4 cut(s) 22, 745, 797, 905
AsuNHI GCTAGC 1 cut(s) 425
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 3 cut(s) 272, 514, 1334
BaeI ACNNNNGTAYC 4 cut(s) 141, 174, 1119, 1152
BalI TGGCCA 1 cut(s) 1348
BamHI GGATCC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 129, 1253
BccI CCATC 2 cut(s) 467, 505
BceAI ACGGC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 2 cut(s) 276, 964
BcuI ACTAGT 1 cut(s) 1097
BfaI CTAG 4 cut(s) 266, 426, 1098, 1220
BfmI CTRYAG 3 cut(s) 130, 579, 1068
BfoI RGCGCY 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 1345
BglII AGATCT 1 cut(s) 1222
BisI GCNGC 3 cut(s) 143, 540, 1242
BlsI GCNGC 3 cut(s) 144, 541, 1243
Bme1390I CCNGG 2 cut(s) 276, 964
Bme18I GGWCC 3 cut(s) 272, 514, 1334
BmeT110I CYCGRG 1 cut(s) 623
BmgBI CACGTC 1 cut(s) 715
BmgT120I GGNCC 4 cut(s) 272, 514, 537, 1334
BmiI GGNNCC 5 cut(s) 78, 151, 202, 1192, 1335
BmrFI CCNGG 2 cut(s) 276, 964
BmrI ACTGGG 2 cut(s) 544, 1501
BmsI GCATC 3 cut(s) 145, 1424, 1447
BmtI GCTAGC 1 cut(s) 429
BmuI ACTGGG 2 cut(s) 544, 1501
BpmI CTGGAG 3 cut(s) 358, 780, 1280
BpuEI CTTGAG 3 cut(s) 546, 684, 877
BpuMI CCSGG 2 cut(s) 276, 964
BsaAI YACGTR 1 cut(s) 1463
BsaBI GATNNNNATC 2 cut(s) 653, 1437
BsaJI CCNNGG 4 cut(s) 184, 196, 301, 517
BsaWI WCCGGW 2 cut(s) 999, 1130
Bsc4I CCNNNNNNNGG 2 cut(s) 999, 1411
Bse1I ACTGG 6 cut(s) 341, 539, 1028, 1159, 1349, 1507
Bse3DI GCAATG 1 cut(s) 1435
Bse8I GATNNNNATC 2 cut(s) 653, 1437
BseDI CCNNGG 4 cut(s) 184, 196, 301, 517
BseGI GGATG 1 cut(s) 180
BseJI GATNNNNATC 2 cut(s) 653, 1437
BseLI CCNNNNNNNGG 2 cut(s) 999, 1411
BseMI GCAATG 1 cut(s) 1435
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 6 cut(s) 341, 539, 1028, 1159, 1349, 1507
BseRI GAGGAG 1 cut(s) 1340
BseXI GCAGC 2 cut(s) 129, 1253
BsgI GTGCAG 1 cut(s) 1095
Bsh1236I CGCG 2 cut(s) 89, 1254
BshFI GGCC 4 cut(s) 195, 210, 539, 1348
BshNI GGYRCC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 4 cut(s) 275, 964, 1000, 1131
BslFI GGGAC 3 cut(s) 490, 1347, 1489
BslI CCNNNNNNNGG 2 cut(s) 999, 1411
BsmFI GGGAC 3 cut(s) 490, 1347, 1489
BsnI GGCC 4 cut(s) 195, 210, 539, 1348
BsoBI CYCGRG 1 cut(s) 623
Bsp1407I TGTACA 1 cut(s) 1399
Bsp143I GATC 8 cut(s) 76, 305, 385, 654, 907, 1222, 1309, 1432
BspACI CCGC 7 cut(s) 44, 50, 89, 540, 710, 891, 1436
BspANI GGCC 4 cut(s) 195, 210, 539, 1348
BspCNI CTCAG 1 cut(s) 429
BspFNI CGCG 2 cut(s) 89, 1254
BspLI GGNNCC 5 cut(s) 78, 151, 202, 1192, 1335
BspMAI CTGCAG 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 1345
BspOI GCTAGC 1 cut(s) 429
BspPI GGATC 5 cut(s) 71, 84, 313, 380, 1427
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 1435
BsrGI TGTACA 1 cut(s) 1399
BsrI ACTGG 6 cut(s) 341, 539, 1028, 1159, 1349, 1507
BssECI CCNNGG 4 cut(s) 184, 196, 301, 517
BssMI GATC 8 cut(s) 76, 305, 385, 654, 907, 1222, 1309, 1432
BssT1I CCWWGG 3 cut(s) 184, 301, 517
Bst4CI ACNGT 9 cut(s) 10, 30, 169, 357, 646, 733, 1089, 1106, 1354
Bst6I CTCTTC 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 142
BstAUI TGTACA 1 cut(s) 1399
BstBAI YACGTR 1 cut(s) 1463
BstC8I GCNNGC 5 cut(s) 130, 134, 427, 1256, 1372
BstDEI CTNAG 4 cut(s) 374, 437, 887, 1245
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 2 cut(s) 89, 1254
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 2 cut(s) 380, 1254
BstKTI GATC 8 cut(s) 79, 308, 388, 657, 910, 1225, 1312, 1435
BstMBI GATC 8 cut(s) 76, 305, 385, 654, 907, 1222, 1309, 1432
BstMWI GCNNNNNNNGC 8 cut(s) 142, 207, 367, 401, 764, 773, 833, 1298
BstSCI CCNGG 2 cut(s) 274, 962
BstSFI CTRYAG 3 cut(s) 130, 579, 1068
BstUI CGCG 2 cut(s) 89, 1254
BstV1I GCAGC 2 cut(s) 129, 1253
BstX2I RGATCY 3 cut(s) 76, 305, 1222
BstYI RGATCY 3 cut(s) 76, 305, 1222
BsuRI GGCC 4 cut(s) 195, 210, 539, 1348
BtrI CACGTC 1 cut(s) 715
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 5 cut(s) 353, 381, 693, 1085, 1152
BveI ACCTGC 1 cut(s) 1345
Cac8I GCNNGC 5 cut(s) 130, 134, 427, 1256, 1372
CfoI GCGC 2 cut(s) 380, 1254
Cfr13I GGNCC 4 cut(s) 272, 514, 537, 1334
Csp6I GTAC 8 cut(s) 31, 150, 251, 441, 493, 614, 1264, 1400
CviAII CATG 2 cut(s) 18, 911
CviQI GTAC 8 cut(s) 31, 150, 251, 441, 493, 614, 1264, 1400
DdeI CTNAG 4 cut(s) 374, 437, 887, 1245
DpnI GATC 8 cut(s) 78, 307, 387, 656, 909, 1224, 1311, 1434
DpnII GATC 8 cut(s) 76, 305, 385, 654, 907, 1222, 1309, 1432
EaeI YGGCCR 1 cut(s) 1346
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EciI GGCGGA 1 cut(s) 65
Eco130I CCWWGG 3 cut(s) 184, 301, 517
Eco147I AGGCCT 1 cut(s) 210
Eco47I GGWCC 3 cut(s) 272, 514, 1334
Eco57I CTGAAG 1 cut(s) 897
Eco88I CYCGRG 1 cut(s) 623
EcoO109I RGGNCCY 1 cut(s) 1334
EcoT14I CCWWGG 3 cut(s) 184, 301, 517
ErhI CCWWGG 3 cut(s) 184, 301, 517
FaeI CATG 2 cut(s) 21, 914
FalI AAGNNNNNCTT 4 cut(s) 760, 792, 870, 902
FaqI GGGAC 3 cut(s) 490, 1347, 1489
FatI CATG 2 cut(s) 17, 910
FbaI TGATCA 1 cut(s) 907
FblI GTMKAC 1 cut(s) 1057
Fnu4HI GCNGC 3 cut(s) 143, 540, 1242
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 3 cut(s) 143, 540, 1242
FspBI CTAG 4 cut(s) 266, 426, 1098, 1220
GlaI GCGC 2 cut(s) 379, 1253
GluI GCNGC 3 cut(s) 143, 540, 1242
GsuI CTGGAG 3 cut(s) 358, 780, 1280
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 4 cut(s) 195, 210, 539, 1348
HapII CCGG 4 cut(s) 275, 964, 1000, 1131
HhaI GCGC 2 cut(s) 380, 1254
Hin1II CATG 2 cut(s) 21, 914
Hin6I GCGC 2 cut(s) 378, 1252
HinP1I GCGC 2 cut(s) 378, 1252
HindIII AAGCTT 1 cut(s) 1372
HinfI GANTC 4 cut(s) 36, 123, 458, 1134
HpaII CCGG 4 cut(s) 275, 964, 1000, 1131
HphI GGTGA 4 cut(s) 22, 745, 797, 905
Hpy166II GTNNAC 7 cut(s) 493, 803, 949, 1058, 1266, 1402, 1466
Hpy188I TCNGA 5 cut(s) 76, 81, 510, 1126, 1420
Hpy188III TCNNGA 5 cut(s) 701, 727, 856, 1220, 1226
Hpy8I GTNNAC 7 cut(s) 493, 803, 949, 1058, 1266, 1402, 1466
Hpy99I CGWCG 3 cut(s) 10, 76, 173
HpyAV CCTTC 5 cut(s) 446, 872, 1004, 1226, 1447
HpyCH4III ACNGT 9 cut(s) 10, 30, 169, 357, 646, 733, 1089, 1106, 1354
HpyCH4IV ACGT 4 cut(s) 714, 951, 1462, 1468
HpyCH4V TGCA 5 cut(s) 132, 767, 980, 1112, 1370
HpyF10VI GCNNNNNNNGC 8 cut(s) 142, 207, 367, 401, 764, 773, 833, 1298
HpyF3I CTNAG 4 cut(s) 374, 437, 887, 1245
HpySE526I ACGT 4 cut(s) 714, 951, 1462, 1468
Hsp92II CATG 2 cut(s) 21, 914
HspAI GCGC 2 cut(s) 378, 1252
KpnI GGTACC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 8 cut(s) 76, 305, 385, 654, 907, 1222, 1309, 1432
LmnI GCTCC 2 cut(s) 206, 575
Lsp1109I GCAGC 2 cut(s) 129, 1253
LweI GCATC 3 cut(s) 145, 1424, 1447
MaeI CTAG 4 cut(s) 266, 426, 1098, 1220
MaeII ACGT 4 cut(s) 714, 951, 1462, 1468
MaeIII GTNAC 5 cut(s) 10, 24, 565, 1077, 1100
MalI GATC 8 cut(s) 78, 307, 387, 656, 909, 1224, 1311, 1434
MboI GATC 8 cut(s) 76, 305, 385, 654, 907, 1222, 1309, 1432
MboII GAAGA 7 cut(s) 68, 71, 74, 217, 226, 229, 929
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 3 cut(s) 76, 305, 1222
MlsI TGGCCA 1 cut(s) 1348
MluNI TGGCCA 1 cut(s) 1348
MlyI GAGTC 1 cut(s) 1143
MmeI TCCRAC 3 cut(s) 54, 104, 323
Mox20I TGGCCA 1 cut(s) 1348
MroXI GAANNNNTTC 1 cut(s) 882
MscI TGGCCA 1 cut(s) 1348
MseI TTAA 5 cut(s) 410, 549, 780, 845, 1376
Msp20I TGGCCA 1 cut(s) 1348
MspI CCGG 4 cut(s) 275, 964, 1000, 1131
MspR9I CCNGG 2 cut(s) 276, 964
MunI CAATTG 1 cut(s) 483
MvnI CGCG 2 cut(s) 89, 1254
MwoI GCNNNNNNNGC 8 cut(s) 142, 207, 367, 401, 764, 773, 833, 1298
NciI CCSGG 2 cut(s) 276, 964
NdeII GATC 8 cut(s) 76, 305, 385, 654, 907, 1222, 1309, 1432
NheI GCTAGC 1 cut(s) 425
NlaIII CATG 2 cut(s) 21, 914
NlaIV GGNNCC 5 cut(s) 78, 151, 202, 1192, 1335
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 4 cut(s) 10, 565, 1077, 1100
PceI AGGCCT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 882
PfeI GAWTC 3 cut(s) 36, 123, 458
PkrI GCNGC 3 cut(s) 144, 541, 1243
PleI GAGTC 1 cut(s) 1142
PpsI GAGTC 1 cut(s) 1142
Ppu21I YACGTR 1 cut(s) 1463
PpuMI RGGWCCY 1 cut(s) 1334
Psp5II RGGWCCY 1 cut(s) 1334
PspN4I GGNNCC 5 cut(s) 78, 151, 202, 1192, 1335
PspPI GGNCC 4 cut(s) 272, 514, 537, 1334
PspPPI RGGWCCY 1 cut(s) 1334
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 3 cut(s) 76, 305, 1222
RsaI GTAC 8 cut(s) 32, 151, 252, 442, 494, 615, 1265, 1401
RsaNI GTAC 8 cut(s) 31, 150, 251, 441, 493, 614, 1264, 1400
SaqAI TTAA 5 cut(s) 410, 549, 780, 845, 1376
SatI GCNGC 3 cut(s) 143, 540, 1242
Sau3AI GATC 8 cut(s) 76, 305, 385, 654, 907, 1222, 1309, 1432
Sau96I GGNCC 4 cut(s) 272, 514, 537, 1334
SbfI CCTGCAGG 1 cut(s) 134
SchI GAGTC 1 cut(s) 1143
ScrFI CCNGG 2 cut(s) 276, 964
SdaI CCTGCAGG 1 cut(s) 134
SfaNI GCATC 3 cut(s) 145, 1424, 1447
SfcI CTRYAG 3 cut(s) 130, 579, 1068
SinI GGWCC 3 cut(s) 272, 514, 1334
SmlI CTYRAG 3 cut(s) 561, 699, 856
SmoI CTYRAG 3 cut(s) 561, 699, 856
SpeI ACTAGT 1 cut(s) 1097
Sse8387I CCTGCAGG 1 cut(s) 134
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 7 cut(s) 44, 50, 89, 540, 710, 891, 1436
SspMI CTAG 4 cut(s) 266, 426, 1098, 1220
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 274, 962
StyI CCWWGG 3 cut(s) 184, 301, 517
TaaI ACNGT 9 cut(s) 10, 30, 169, 357, 646, 733, 1089, 1106, 1354
TaiI ACGT 4 cut(s) 717, 954, 1465, 1471
TatI WGTACW 4 cut(s) 250, 613, 1263, 1399
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 3 cut(s) 36, 123, 458
Tru1I TTAA 5 cut(s) 410, 549, 780, 845, 1376
Tru9I TTAA 5 cut(s) 410, 549, 780, 845, 1376
TscAI CASTG 5 cut(s) 360, 388, 700, 1092, 1159
TseFI GTSAC 4 cut(s) 10, 565, 1077, 1100
TseI GCWGC 2 cut(s) 142, 1241
Tsp45I GTSAC 4 cut(s) 10, 565, 1077, 1100
TspDTI ATGAA 6 cut(s) 482, 841, 958, 975, 1195, 1290
TspRI CASTG 5 cut(s) 360, 388, 700, 1092, 1159
VpaK11BI GGWCC 3 cut(s) 272, 514, 1334
XapI RAATTY 3 cut(s) 551, 1447, 1484
XbaI TCTAGA 1 cut(s) 1219
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 1057
XmnI GAANNNNTTC 1 cut(s) 882
XspI CTAG 4 cut(s) 266, 426, 1098, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.