Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005014

Physical Location & Seq

Genomic Coordinates Forward (+)

68388035 .. 68397666

Gene Structure 9632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG450000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3471 bp

ATGGCGACGGTGACGGAATCTGCCATGCCGTTCAGATTGTTGGCCGAGGAAGAAGACGATAGCTCGAATCCGACGGACGCCGTCGCATTCGTCGGACTGTGCTTGGTGTTAGGAATCGCATGCAGGCATGTGTTGCGTGGCACCAGAGTGCCCTACACCGTTGCTCTTCTAATTCTCGGCATTGCCATCGGTTCCATAGAATATGGTACACACCATCATTTGGGCAAGATTGGGGATGGCATTCGAATTTGGGCATCTATTGATCCTGACCTTCTATTGGCCGTTTTTCTTCCTGCCCTTCTTTTTGAGAGTTCATTTTCTATGGAAGTGCACCAAATAAAGAGGTGTATTGTTCAAATGATTATACTAGCTGGCCCAGGTGTTTTGCTATCAACCTTCTGTCTTGGATCTGCTTTGAAGCTCACTTTCCCTTATGGCTGGACTTGGAAAACATCATTGTTGTTGGGAGGACTTTTGAGTGCTACTGATCCCGTGGCTGTTGTTGCTCTATTAAAAGAGCTTGGTGCAAGCAAAAAACTGAGTACAATAATCGAAGGAGAGTCCTTGATGAATGATGGGACAGCAATTGTGGTTTATCAGCTATTCTATCAAATGGTCCTCGGAAAGAGCTATGACTGGGCAGCCATAATTAAATTTCTATCTGAAGTCGCTTTTGGAGCTGTAGGTATTGGTCTTGCTTTTGGTATAATATCTGTCCTGTGGCTTGGGTTCATTTTCAATGACACTGTGATAGAGATCACACTAACATTGGCTGTGAGCTATGTTGCCTACTTCACTGCTCAAGAGGGTGCAGCTGTGTCTGGCGTTTTGACAGTGATGACTTTAGGAATGTTTTATGCTGCGGTTGCAAAGACAGCTTTTAAGGGTGAAAGCCAGCAAAGCTTACATCATTTCTGGGAAATGATTGCCTACATTGCTAATACATTAATTTTCATCTTGAGCGGAGTTGTTATAGCTGAAGGTGTTCTAGATACTGATAATATTTTGGGAAATGGAAAATCTTGGGCCTATCTTGTTCTTCTGTATGTTTATGTACAAATTTCGCGGATTATAGTTGTTGGAGTATCATTTCCCTTGCTTCGGTATTTTGGCTATGGTTTAGATTGGAAGGAGGCTATAATCCTCATATGGTCAGGTCTGCGAGGCGCTGTAGCATTGTCACTTGCACTATCGGTTAAGCGTACTAGTGACAGTTCTACGCTTCTCAGTTCGGACACAGGAGTCCGGTTTGTTTTCTTCACTGGTGGAATTGTCTTCTTGACACTTATTGTGAATGGTTCAACCACACAATTCGTTTTACACTTTCTAGCAATGGATAGGCTATCAGCAGCTAAGAGGCGCATACTGCATTACACGAAATATGAAATGTTGAACAAAGCATTAGAGGCTTTTGGCGATCTTGGAGATGACGAGGAATTGGGGCCTGCTGATTGGCCTACAGTGAAAAGATACATTACAAGCTTAAATGATGTGGACAGTGAACCTGTACACCCTCATACTGCAGATGAAAGTGATAATAACCTGGACATTACAAATTTGAAAGATATACGTGAACGCCATTTGAATGGAGTTCAAGCTGCTTACTGGACCATGCTTGATGAGGGAAGGATTACAAAATCTACTGCAAATATTTTGATGCAATCTGTAGATGAAGCATTTGACTTGGTTTCAAATGAGCCTTTATGTGACTGGAAAGGTTTAAAATCTCAAGTTCATTTCCCAAATTACTACAAGTTTCTTCAAACAAGCATTTGCCCTCAGAAGTTGGTAACCTATTTTACTGTGGAAAGGTTGGAATCTGCATGTTCCATTTGTGCTGCCTTTCTTCGTGCCCATAGAATAGCAAGACAGCAACTCCATGATTTTATAGGTGATAGTGATATTGCTTCTATCATCATTAATGAAAGTGAGGCAGAAGGAGAAGAAGCAGAGAAATTCCTGGAAGATGTTCGTGTTACATTTCCTCAGGTTTTGCGCGTTGTGAAAACAAGACAAGTAACATACTCGGTTCTGAACCATTTAATTGATTATCTCCAAAACCTTGAGAAGGTTGGCCTGCTGGAAGAAAAAGAGATGCTCCATCTTCATGATGCGGTCCAGACTGACCTGAAAAAGCTTCTAAGGAATCCCCCGATGGTAAAGGTTCCAAAAATAACTGATTTGATTAATATCAATCCTCTGATGGGGGCTCTGCCTTCTTCAGTTCGTGAACAACTTGAAGGTTCTACTAAGGAAACAATGAAATTACGTGGTGCGACACTTTACAAGGAGGGCTCCAAGCCTACTGGTATTTGGCTTATTTCCACTGGGGTAGTCAAGTGGACAAGTAAGAGCATAAAAAACAAGCATTCACTGCATCCAACTTTTACTCATGGGAGTACTTTGGGCCTATATGAAGTGCTTACTGGAAAGCCCTATATTTGTGATGTCATCACAGATTCAGTGGTTCTGTGCTTTTTCATTGAAAATCACAAGATACATTCAATGCTCAGGTCTGATCCTTCAGTAGAAGACTTCCTATGGCAGGAAAGTGCTATTATGCTTCTGAAACTTCTCCTTCCACAAAAGTTTGAGAAGATGGCAATGCAAGATTTAAGAGTTCTTGTTGCTGAAAGGTCAACAACGACTGTTTACATAAGGGGAGAGTTTGTCGAAATTCCTTACCATTCCATTGGGTTTCTATTAGAAGGATTTGTCAAGACCCAAGGCATCCAAGAAGAACTGATTACATCACCTGCACCTCTATTGTCCTCACGCGGTTACCAAAGCTTCCAAAATCTGGAAACATTAGGCACCATGGGATCCCGAACCAGTTTTTCTCGTCAAGGAGCCAGTTTTTCCCATCAAGGATCAAGTTATCTTGTTGAAACAAGATCAAGAGTGATTGTGTTCAACATGGCAGCATTTGAATCTGACGGTCCTCTAAATAGAGGGACTTCCTCATTTTTGTCACGTGGAGTTGATCATCCACTCAGAAGTCTTAGTAGAGAACATACTGGTCTTATGAGTTGGCCTGAACAGTTCTTTAAGCCGAAGCAACAAAAACAGAGTCCTGAAGGGACTAACCAACAAGCTAACAGCTTATCTGCAAGGGCAATGCAGTTGAGCATATATGGCAGCATGGTGAACGTCCGCCTCCGTACTCGAAGTTTTCCGAGAAGTGGTCCTACTAAACCATCACATACGGTGTCATATCCAAATGTTCCATTATCCGATTCTCGTCCGCTTGTTTCTGTCAGATCAGAAGGGGCGTCTACTGTCAGAAAGAATCTGGAAGTGAGAAAATTCGCTGAGAAAATAACTCCTCCAGGACAGTCAAGTACAAACCCAAAGGAAAGTCATGTGGTAATAGATGATTCCAGTGATGAATCTGGTGGTGAGGATGATGTAATTATAAGAATTGATTCACCAAGTAGGCTTTCTTTTCGCCACGCTCATTTCACACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019222 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031323 GO:0031967 GO:0031975 GO:0034220 GO:0035725 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1901700 GO:1902600 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger cNMP_binding

Protein Analysis

1156

Amino Acids

128.17

Weight (kDa)

6.25

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	36 - 440	1.1e-66	Sodium/hydrogen exchanger, transmembrane
cNMP_binding	PF00027	757 - 839	7e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14660 AT1G14660 AT2G01980
fragaria_vesca	FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35890
malus_domestica	MD13G1014200.v1.1 MD16G1011300.v1.1 MD16G1011400.v1.1 MD16G1011500.v1.1
prunus_persica	Prupe.1G339200_v2.0.a1 Prupe.1G339200_v2.0.a1
pyrus_communis	pycom13g01220 pycom13g01230 pycom16g01100 pycom16g01110
rosa_chinensis	RchiOBHm_Chr4g0445491
rosa_laevigata	RLG00000005737
rosa_multiflora	Rmu_sc0001509.1_g000010 Rmu_sc0010466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385970
rosa_rugosa	Rorug04G0361700
rosa_samantha	Rh4AG423100 Rh4BG435100 Rh4CG450000 Rh4DG431400
rosa_wichuraiana	Rw4G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3416
AarI	CACCTGC	1 cut(s)	2764
AasI	GACNNNNNNGTC	1 cut(s)	1241
Acc36I	ACCTGC	1 cut(s)	2764
AccB1I	GGYRCC	2 cut(s)	140, 2813
AccB7I	CCANNNNNTGG	2 cut(s)	220, 2800
AccBSI	CCGCTC	1 cut(s)	963
AccI	GTMKAC	1 cut(s)	3275
AccII	CGCG	3 cut(s)	1066, 1998, 2778
AciI	CCGC	7 cut(s)	863, 963, 1066, 2114, 2778, 3154, 3245
AclWI	GGATC	7 cut(s)	257, 415, 482, 2513, 2817, 2830, 2878
AcoI	YGGCCR	2 cut(s)	42, 279
AcsI	RAATTY	7 cut(s)	246, 653, 1059, 1555, 1955, 2676, 3305
AcuI	CTGAAG	5 cut(s)	684, 999, 2205, 2508, 3096
AcvI	CACGTG	1 cut(s)	2975
AcyI	GRCGYC	2 cut(s)	78, 3272
AfaI	GTAC	8 cut(s)	208, 544, 1056, 1204, 1509, 2401, 3163, 3343
AfiI	CCNNNNNNNGG	8 cut(s)	220, 277, 1101, 2068, 2204, 2545, 2800, 3182
AhlI	ACTAGT	1 cut(s)	1205
AjnI	CCWGG	4 cut(s)	376, 1542, 1959, 3328
AjuI	GAANNNNNNNTTGG	4 cut(s)	657, 689, 3424, 3456
AleI	CACNNNNGTG	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	333
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	7 cut(s)	257, 415, 482, 2513, 2817, 2830, 2878
AoxI	GGCC	9 cut(s)	42, 279, 373, 1026, 1442, 1454, 2074, 2407, 3032
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	8 cut(s)	641, 812, 860, 1349, 1598, 1838, 2921, 3138
ApoI	RAATTY	7 cut(s)	246, 653, 1059, 1555, 1955, 2676, 3305
ArsI	GACNNNNNNTTYG	2 cut(s)	3055, 3087
AseI	ATTAAT	3 cut(s)	947, 1920, 2187
Asp700I	GAANNNNTTC	3 cut(s)	984, 1968, 3424
AspLEI	GCGC	3 cut(s)	1169, 1362, 1998
AspS9I	GGNCC	9 cut(s)	374, 616, 1026, 1442, 1608, 2116, 2407, 2939, 3185
AsuHPI	GGTGA	7 cut(s)	22, 899, 1904, 2745, 3157, 3410, 3420
AsuII	TTCGAA	1 cut(s)	244
AvaII	GGWCC	5 cut(s)	616, 1608, 2116, 2939, 3185
AxyI	CCTNAGG	1 cut(s)	1986
BaeGI	GKGCMC	3 cut(s)	153, 333, 1855
BamHI	GGATCC	1 cut(s)	2822
BanI	GGYRCC	2 cut(s)	140, 2813
BanII	GRGCYC	2 cut(s)	2212, 2297
BarI	GAAGNNNNNNTAC	2 cut(s)	3172, 3204
BbrPI	CACGTG	1 cut(s)	2975
BbsI	GAAGAC	3 cut(s)	60, 1267, 2538
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	8 cut(s)	653, 824, 847, 1361, 1585, 1825, 2933, 3150
BceAI	ACGGC	3 cut(s)	13, 65, 266
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	4 cut(s)	378, 1544, 1961, 3330
BclI	TGATCA	1 cut(s)	2983
BcuI	ACTAGT	1 cut(s)	1205
BfaI	CTAG	4 cut(s)	368, 989, 1206, 1328
BfmI	CTRYAG	5 cut(s)	681, 1170, 1458, 1521, 1665
BfoI	RGCGCY	1 cut(s)	1170
BfuAI	ACCTGC	1 cut(s)	2764
BisI	GCNGC	8 cut(s)	642, 813, 861, 1350, 1599, 1839, 2922, 3139
BlsI	GCNGC	8 cut(s)	643, 814, 862, 1351, 1600, 1840, 2923, 3140
BmcAI	AGTACT	1 cut(s)	2401
Bme1390I	CCNGG	4 cut(s)	378, 1544, 1961, 3330
Bme18I	GGWCC	5 cut(s)	616, 1608, 2116, 2939, 3185
BmgT120I	GGNCC	9 cut(s)	374, 616, 1026, 1442, 1608, 2116, 2407, 2939, 3185
BmiI	GGNNCC	8 cut(s)	142, 193, 1443, 2166, 2296, 2815, 2824, 2851
BmrFI	CCNGG	4 cut(s)	378, 1544, 1961, 3330
BmrI	ACTGGG	2 cut(s)	646, 2337
BmsI	GCATC	6 cut(s)	263, 1647, 2085, 2101, 2386, 2739
BmuI	ACTGGG	2 cut(s)	646, 2337
BpiI	GAAGAC	3 cut(s)	60, 1267, 2538
BpmI	CTGGAG	1 cut(s)	3312
Bpu10I	CCTNAGC	1 cut(s)	2510
Bpu14I	TTCGAA	1 cut(s)	244
BpuEI	CTTGAG	4 cut(s)	786, 979, 1713, 2084
BsaAI	YACGTR	3 cut(s)	1571, 2270, 2975
BsaBI	GATNNNNATC	2 cut(s)	755, 2189
BsaHI	GRCGYC	2 cut(s)	78, 3272
BsaJI	CCNNGG	6 cut(s)	45, 376, 492, 619, 2725, 2817
BsaWI	WCCGGW	1 cut(s)	1245
BsaXI	ACNNNNNCTCC	4 cut(s)	1860, 1890, 2655, 2685
Bsc4I	CCNNNNNNNGG	8 cut(s)	220, 277, 1101, 2068, 2204, 2545, 2800, 3182
Bse21I	CCTNAGG	1 cut(s)	1986
Bse3DI	GCAATG	5 cut(s)	180, 933, 1338, 2610, 3123
Bse8I	GATNNNNATC	2 cut(s)	755, 2189
BseBI	CCWGG	4 cut(s)	378, 1544, 1961, 3330
BseDI	CCNNGG	6 cut(s)	45, 376, 492, 619, 2725, 2817
BseGI	GGATG	5 cut(s)	241, 2377, 2730, 2986, 3409
BseJI	GATNNNNATC	2 cut(s)	755, 2189
BseLI	CCNNNNNNNGG	8 cut(s)	220, 277, 1101, 2068, 2204, 2545, 2800, 3182
BseMI	GCAATG	5 cut(s)	180, 933, 1338, 2610, 3123
BseMII	CTCAG	7 cut(s)	530, 1240, 1793, 2000, 2524, 3007, 3303
BseRI	GAGGAG	1 cut(s)	3315
BseSI	GKGCMC	3 cut(s)	153, 333, 1855
BseXI	GCAGC	8 cut(s)	653, 824, 847, 1361, 1585, 1825, 2933, 3150
BsgI	GTGCAG	2 cut(s)	831, 2742
Bsh1236I	CGCG	3 cut(s)	1066, 1998, 2778
BshFI	GGCC	9 cut(s)	44, 281, 375, 1028, 1444, 1456, 2076, 2409, 3034
BshNI	GGYRCC	2 cut(s)	140, 2813
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	1246
BslFI	GGGAC	3 cut(s)	592, 2968, 3094
BslI	CCNNNNNNNGG	8 cut(s)	220, 277, 1101, 2068, 2204, 2545, 2800, 3182
BsmFI	GGGAC	3 cut(s)	592, 2968, 3094
BsmI	GAATGC	3 cut(s)	86, 240, 2368
BsnI	GGCC	9 cut(s)	44, 281, 375, 1028, 1444, 1456, 2076, 2409, 3034
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	5 cut(s)	153, 333, 1855, 2212, 2297
Bsp1407I	TGTACA	2 cut(s)	1054, 1507
Bsp19I	CCATGG	1 cut(s)	2817
BspACI	CCGC	7 cut(s)	863, 963, 1066, 2114, 2778, 3154, 3245
BspANI	GGCC	9 cut(s)	44, 281, 375, 1028, 1444, 1456, 2076, 2409, 3034
BspCNI	CTCAG	7 cut(s)	531, 1239, 1792, 1999, 2523, 3006, 3304
BspFNI	CGCG	3 cut(s)	1066, 1998, 2778
BspHI	TCATGA	1 cut(s)	2107
BspLI	GGNNCC	8 cut(s)	142, 193, 1443, 2166, 2296, 2815, 2824, 2851
BspMAI	CTGCAG	1 cut(s)	1525
BspMI	ACCTGC	1 cut(s)	2764
BspPI	GGATC	7 cut(s)	257, 415, 482, 2513, 2817, 2830, 2878
BspQI	GCTCTTC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	244
BspT107I	GGYRCC	2 cut(s)	140, 2813
BsrBI	CCGCTC	1 cut(s)	963
BsrDI	GCAATG	5 cut(s)	180, 933, 1338, 2610, 3123
BsrGI	TGTACA	2 cut(s)	1054, 1507
BssECI	CCNNGG	6 cut(s)	45, 376, 492, 619, 2725, 2817
BssNI	GRCGYC	2 cut(s)	78, 3272
BssT1I	CCWWGG	2 cut(s)	2725, 2817
Bst2UI	CCWGG	4 cut(s)	378, 1544, 1961, 3330
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	2 cut(s)	78, 3272
BstAPI	GCANNNNNTGC	2 cut(s)	133, 2374
BstAUI	TGTACA	2 cut(s)	1054, 1507
BstBAI	YACGTR	3 cut(s)	1571, 2270, 2975
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	7 cut(s)	121, 125, 373, 529, 896, 1446, 2078
BstDSI	CCRYGG	2 cut(s)	492, 2817
BstEII	GGTNACC	2 cut(s)	1789, 2780
BstENI	CCTNNNNNAGG	2 cut(s)	2066, 2543
BstF5I	GGATG	5 cut(s)	241, 2377, 2730, 2986, 3409
BstFNI	CGCG	3 cut(s)	1066, 1998, 2778
BstH2I	RGCGCY	1 cut(s)	1170
BstHHI	GCGC	3 cut(s)	1169, 1362, 1998
BstNI	CCWGG	4 cut(s)	378, 1544, 1961, 3330
BstNSI	RCATGY	3 cut(s)	123, 131, 1827
BstPI	GGTNACC	2 cut(s)	1789, 2780
BstSCI	CCNGG	4 cut(s)	376, 1542, 1959, 3328
BstSFI	CTRYAG	5 cut(s)	681, 1170, 1458, 1521, 1665
BstSLI	GKGCMC	3 cut(s)	153, 333, 1855
BstUI	CGCG	3 cut(s)	1066, 1998, 2778
BstV1I	GCAGC	8 cut(s)	653, 824, 847, 1361, 1585, 1825, 2933, 3150
BstV2I	GAAGAC	3 cut(s)	60, 1267, 2538
BstX2I	RGATCY	2 cut(s)	407, 2822
BstXI	CCANNNNNNTGG	2 cut(s)	1586, 2693
BstYI	RGATCY	2 cut(s)	407, 2822
Bsu36I	CCTNAGG	1 cut(s)	1986
BsuRI	GGCC	9 cut(s)	44, 281, 375, 1028, 1444, 1456, 2076, 2409, 3034
BtgI	CCRYGG	2 cut(s)	492, 2817
BtsCI	GGATG	5 cut(s)	241, 2377, 2730, 2986, 3409
BtsI	GCAGTG	2 cut(s)	795, 2372
BveI	ACCTGC	1 cut(s)	2764
Cac8I	GCNNGC	7 cut(s)	121, 125, 373, 529, 896, 1446, 2078
CciI	TCATGA	1 cut(s)	2107
CfoI	GCGC	3 cut(s)	1169, 1362, 1998
Cfr13I	GGNCC	9 cut(s)	374, 616, 1026, 1442, 1608, 2116, 2407, 2939, 3185
CseI	GACGC	2 cut(s)	86, 3261
Csp6I	GTAC	8 cut(s)	207, 543, 1055, 1203, 1508, 2400, 3162, 3342
CviQI	GTAC	8 cut(s)	207, 543, 1055, 1203, 1508, 2400, 3162, 3342
DraI	TTTAAA	1 cut(s)	1722
DrdI	GACNNNNNNGTC	1 cut(s)	1241
DseDI	GACNNNNNNGTC	1 cut(s)	1241
EaeI	YGGCCR	2 cut(s)	42, 279
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	3143
Eco130I	CCWWGG	2 cut(s)	2725, 2817
Eco24I	GRGCYC	2 cut(s)	2212, 2297
Eco47I	GGWCC	5 cut(s)	616, 1608, 2116, 2939, 3185
Eco57I	CTGAAG	5 cut(s)	684, 999, 2205, 2508, 3096
Eco72I	CACGTG	1 cut(s)	2975
Eco81I	CCTNAGG	1 cut(s)	1986
Eco91I	GGTNACC	2 cut(s)	1789, 2780
EcoNI	CCTNNNNNAGG	2 cut(s)	2066, 2543
EcoO109I	RGGNCCY	1 cut(s)	1442
EcoO65I	GGTNACC	2 cut(s)	1789, 2780
EcoRII	CCWGG	4 cut(s)	376, 1542, 1959, 3328
EcoT14I	CCWWGG	2 cut(s)	2725, 2817
EcoT38I	GRGCYC	2 cut(s)	2212, 2297
ErhI	CCWWGG	2 cut(s)	2725, 2817
FaqI	GGGAC	3 cut(s)	592, 2968, 3094
FauNDI	CATATG	1 cut(s)	1148
FbaI	TGATCA	1 cut(s)	2983
FblI	GTMKAC	1 cut(s)	3275
Fnu4HI	GCNGC	8 cut(s)	642, 813, 861, 1350, 1599, 1839, 2922, 3139
FokI	GGATG	5 cut(s)	248, 2364, 2717, 2973, 3416
FriOI	GRGCYC	2 cut(s)	2212, 2297
Fsp4HI	GCNGC	8 cut(s)	642, 813, 861, 1350, 1599, 1839, 2922, 3139
FspBI	CTAG	4 cut(s)	368, 989, 1206, 1328
GlaI	GCGC	3 cut(s)	1168, 1361, 1997
GluI	GCNGC	8 cut(s)	642, 813, 861, 1350, 1599, 1839, 2922, 3139
GsuI	CTGGAG	1 cut(s)	3312
HaeII	RGCGCY	1 cut(s)	1170
HaeIII	GGCC	9 cut(s)	44, 281, 375, 1028, 1444, 1456, 2076, 2409, 3034
HapII	CCGG	1 cut(s)	1246
HgaI	GACGC	2 cut(s)	86, 3261
HhaI	GCGC	3 cut(s)	1169, 1362, 1998
Hin1I	GRCGYC	2 cut(s)	78, 3272
Hin6I	GCGC	3 cut(s)	1167, 1360, 1996
HinP1I	GCGC	3 cut(s)	1167, 1360, 1996
HincII	GTYRAC	1 cut(s)	2640
HindII	GTYRAC	1 cut(s)	2640
HindIII	AAGCTT	4 cut(s)	901, 1480, 2135, 2788
HpaII	CCGG	1 cut(s)	1246
HphI	GGTGA	7 cut(s)	22, 899, 1904, 2745, 3157, 3410, 3420
Hpy99I	CGWCG	4 cut(s)	10, 76, 86, 95
HpyCH4IV	ACGT	4 cut(s)	1570, 2269, 2974, 3150
HpySE526I	ACGT	4 cut(s)	1570, 2269, 2974, 3150
Hsp92I	GRCGYC	2 cut(s)	78, 3272
HspAI	GCGC	3 cut(s)	1167, 1360, 1996
Ksp22I	TGATCA	1 cut(s)	2983
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	4 cut(s)	677, 2103, 2300, 2849
Lsp1109I	GCAGC	8 cut(s)	653, 824, 847, 1361, 1585, 1825, 2933, 3150
LweI	GCATC	6 cut(s)	263, 1647, 2085, 2101, 2386, 2739
MaeI	CTAG	4 cut(s)	368, 989, 1206, 1328
MaeII	ACGT	4 cut(s)	1570, 2269, 2974, 3150
MaeIII	GTNAC	9 cut(s)	10, 1179, 1208, 1706, 1789, 1975, 2017, 2780, 2970
MbiI	CCGCTC	1 cut(s)	963
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	407, 2822
MhlI	GDGCHC	5 cut(s)	153, 333, 1855, 2212, 2297
MlyI	GAGTC	3 cut(s)	569, 1251, 3079
MmeI	TCCRAC	5 cut(s)	73, 95, 1060, 1794, 2405
MroXI	GAANNNNTTC	3 cut(s)	984, 1968, 3424
MslI	CAYNNNNRTG	3 cut(s)	146, 1584, 2106
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	1 cut(s)	1246
MspR9I	CCNGG	4 cut(s)	378, 1544, 1961, 3330
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	3 cut(s)	86, 240, 2368
MvaI	CCWGG	4 cut(s)	378, 1544, 1961, 3330
MvnI	CGCG	3 cut(s)	1066, 1998, 2778
NcoI	CCATGG	1 cut(s)	2817
NdeI	CATATG	1 cut(s)	1148
NlaIV	GGNNCC	8 cut(s)	142, 193, 1443, 2166, 2296, 2815, 2824, 2851
NmeAIII	GCCGAG	2 cut(s)	70, 156
NmuCI	GTSAC	5 cut(s)	10, 1179, 1208, 1706, 2970
NspI	RCATGY	3 cut(s)	123, 131, 1827
NspV	TTCGAA	1 cut(s)	244
OliI	CACNNNNGTG	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	123
PagI	TCATGA	1 cut(s)	2107
PaqCI	CACCTGC	1 cut(s)	2764
PciSI	GCTCTTC	1 cut(s)	171
PctI	GAATGC	3 cut(s)	86, 240, 2368
PdmI	GAANNNNTTC	3 cut(s)	984, 1968, 3424
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	2 cut(s)	220, 2800
PfoI	TCCNGGA	2 cut(s)	1959, 3328
PkrI	GCNGC	8 cut(s)	643, 814, 862, 1351, 1600, 1840, 2923, 3140
PleI	GAGTC	3 cut(s)	568, 1250, 3078
PmaCI	CACGTG	1 cut(s)	2975
PmlI	CACGTG	1 cut(s)	2975
PpsI	GAGTC	3 cut(s)	568, 1250, 3078
Ppu21I	YACGTR	3 cut(s)	1571, 2270, 2975
PshBI	ATTAAT	3 cut(s)	947, 1920, 2187
PsiI	TTATAA	1 cut(s)	3416
Psp6I	CCWGG	4 cut(s)	376, 1542, 1959, 3328
PspCI	CACGTG	1 cut(s)	2975
PspEI	GGTNACC	2 cut(s)	1789, 2780
PspGI	CCWGG	4 cut(s)	376, 1542, 1959, 3328
PspN4I	GGNNCC	8 cut(s)	142, 193, 1443, 2166, 2296, 2815, 2824, 2851
PspPI	GGNCC	9 cut(s)	374, 616, 1026, 1442, 1608, 2116, 2407, 2939, 3185
PstI	CTGCAG	1 cut(s)	1525
PsuI	RGATCY	2 cut(s)	407, 2822
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	8 cut(s)	208, 544, 1056, 1204, 1509, 2401, 3163, 3343
RsaNI	GTAC	8 cut(s)	207, 543, 1055, 1203, 1508, 2400, 3162, 3342
RseI	CAYNNNNRTG	3 cut(s)	146, 1584, 2106
SapI	GCTCTTC	1 cut(s)	171
SatI	GCNGC	8 cut(s)	642, 813, 861, 1350, 1599, 1839, 2922, 3139
Sau96I	GGNCC	9 cut(s)	374, 616, 1026, 1442, 1608, 2116, 2407, 2939, 3185
ScaI	AGTACT	1 cut(s)	2401
SchI	GAGTC	3 cut(s)	569, 1251, 3079
ScrFI	CCNGG	4 cut(s)	378, 1544, 1961, 3330
SduI	GDGCHC	5 cut(s)	153, 333, 1855, 2212, 2297
SfaNI	GCATC	6 cut(s)	263, 1647, 2085, 2101, 2386, 2739
SfcI	CTRYAG	5 cut(s)	681, 1170, 1458, 1521, 1665
SfuI	TTCGAA	1 cut(s)	244
SinI	GGWCC	5 cut(s)	616, 1608, 2116, 2939, 3185
SmiMI	CAYNNNNRTG	3 cut(s)	146, 1584, 2106
SmlI	CTYRAG	4 cut(s)	801, 958, 1728, 2063
SmoI	CTYRAG	4 cut(s)	801, 958, 1728, 2063
SpeI	ACTAGT	1 cut(s)	1205
SphI	GCATGC	1 cut(s)	123
SsiI	CCGC	7 cut(s)	863, 963, 1066, 2114, 2778, 3154, 3245
SspI	AATATT	2 cut(s)	1003, 1651
SspMI	CTAG	4 cut(s)	368, 989, 1206, 1328
StyD4I	CCNGG	4 cut(s)	376, 1542, 1959, 3328
StyI	CCWWGG	2 cut(s)	2725, 2817
TaiI	ACGT	4 cut(s)	1573, 2272, 2977, 3153
TaqI	TCGA	5 cut(s)	65, 244, 552, 2673, 3166
TatI	WGTACW	5 cut(s)	542, 1054, 1507, 2399, 3341
TseFI	GTSAC	5 cut(s)	10, 1179, 1208, 1706, 2970
TseI	GCWGC	8 cut(s)	641, 812, 860, 1349, 1598, 1838, 2921, 3138
Tsp45I	GTSAC	5 cut(s)	10, 1179, 1208, 1706, 2970
TspGWI	ACGGA	3 cut(s)	29, 89, 3149
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	2 cut(s)	220, 2800
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	5 cut(s)	616, 1608, 2116, 2939, 3185
VspI	ATTAAT	3 cut(s)	947, 1920, 2187
XagI	CCTNNNNNAGG	2 cut(s)	2066, 2543
XapI	RAATTY	7 cut(s)	246, 653, 1059, 1555, 1955, 2676, 3305
XbaI	TCTAGA	1 cut(s)	988
XceI	RCATGY	3 cut(s)	123, 131, 1827
XmiI	GTMKAC	1 cut(s)	3275
XmnI	GAANNNNTTC	3 cut(s)	984, 1968, 3424
XspI	CTAG	4 cut(s)	368, 989, 1206, 1328
ZrmI	AGTACT	1 cut(s)	2401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.