Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005014

Physical Location & Seq

Genomic Coordinates Reverse (-)

849270 .. 850398

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1011300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAATTGTGTGGTGTGGTGCTTTACAGGGAGGGATCCAAGCCTACTGGTATTTGGCTTCTTTCACTGGTGGTAGTAAAGTGGACAAGTAAGAGCATAAAAAACAAGCACTCGCTGCATCCAACTTTTACTCACGGGAGTACTTTGGGCCTGTATGAAGTGCTAACCGGAAAGCCCTACATTTGTGACATGATCACCGATTCTGTGGTTCTCTGCTTTTGCATTGAAACTCATAATATAAATTCAATGCTCCGGTCCGATCCCTCAGTCGAAGACTTCCTCTGGCAGGAAAGTTCTATTGCTCTTTTGAAACTTTTCCTTCCACAAATATTTGAGAAAATGGCAATGCAAGATTTGAGAGCTCTTGTTGCGGAAAGGTCAGTGATGACGATTTACCTAAGGGACGAATCTTTTGAAATTCCGTACCGTTCCATTGGATTTCTGTTAGAGGGTTTCGTTAAAATCCAAGGTGTCCAAGAAGAACTGATCACATCACCTGCACCTCTATTCCCCTCACATGGTTATCCAGAGCTTCCAGAATCTGGAAACATCAGGCACCAGGGTAGCCAGTTTTTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019222 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031323 GO:0031967 GO:0031975 GO:0034220 GO:0035725 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1901700 GO:1902600 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger cNMP_binding

Protein Analysis

194

Amino Acids

21.87

Weight (kDa)

6.06

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14660 AT1G14660 AT2G01980
fragaria_vesca	FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35890
malus_domestica	MD13G1014200.v1.1 MD16G1011300.v1.1 MD16G1011400.v1.1 MD16G1011500.v1.1
prunus_persica	Prupe.1G339200_v2.0.a1 Prupe.1G339200_v2.0.a1
pyrus_communis	pycom13g01220 pycom13g01230 pycom16g01100 pycom16g01110
rosa_chinensis	RchiOBHm_Chr4g0445491
rosa_laevigata	RLG00000005737
rosa_multiflora	Rmu_sc0001509.1_g000010 Rmu_sc0010466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385970
rosa_rugosa	Rorug04G0361700
rosa_samantha	Rh4AG423100 Rh4BG435100 Rh4CG450000 Rh4DG431400
rosa_wichuraiana	Rw4G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	505
Acc36I	ACCTGC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	555
AccB7I	CCANNNNNTGG	1 cut(s)	542
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	3 cut(s)	30, 43, 254
AcsI	RAATTY	2 cut(s)	241, 417
AfaI	GTAC	2 cut(s)	142, 425
AfiI	CCNNNNNNNGG	3 cut(s)	286, 518, 542
AgsI	TTSAA	4 cut(s)	227, 246, 310, 416
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	2 cut(s)	362, 532
AluI	AGCT	2 cut(s)	362, 532
Alw21I	GWGCWC	1 cut(s)	364
AlwI	GGATC	3 cut(s)	30, 43, 254
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	241, 417
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
Asp700I	GAANNNNTTC	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	148, 255
AsuHPI	GGTGA	2 cut(s)	187, 486
AvaII	GGWCC	1 cut(s)	255
AxyI	CCTNAGG	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	560
BclI	TGATCA	2 cut(s)	192, 486
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
BmcAI	AGTACT	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	148, 255
BmiI	GGNNCC	2 cut(s)	37, 557
BmrFI	CCNGG	1 cut(s)	560
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	466, 559
BsaWI	WCCGGW	2 cut(s)	167, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 518, 542
Bse1I	ACTGG	3 cut(s)	52, 72, 568
Bse21I	CCTNAGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	2 cut(s)	466, 559
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	3 cut(s)	286, 518, 542
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	3 cut(s)	52, 72, 568
BseXI	GCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	168, 253
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	3 cut(s)	286, 518, 542
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	35, 192, 259, 486
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	37, 557
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	3 cut(s)	30, 43, 254
BspT107I	GGYRCC	1 cut(s)	555
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	52, 72, 568
BssECI	CCNNGG	2 cut(s)	466, 559
BssMI	GATC	4 cut(s)	35, 192, 259, 486
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	265, 398
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	4 cut(s)	38, 195, 262, 489
BstMBI	GATC	4 cut(s)	35, 192, 259, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 368
BstNI	CCWGG	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	65, 387
BveI	ACCTGC	1 cut(s)	505
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	148, 255
CpoI	CGGWCCG	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	141, 424
CspI	CGGWCCG	1 cut(s)	255
CviAII	CATG	2 cut(s)	190, 518
CviJI	RGCY	7 cut(s)	43, 58, 150, 175, 362, 532, 567
CviKI_1	RGCY	7 cut(s)	43, 58, 150, 175, 362, 532, 567
CviQI	GTAC	2 cut(s)	141, 424
DdeI	CTNAG	2 cut(s)	265, 398
DpnI	GATC	4 cut(s)	37, 194, 261, 488
DpnII	GATC	4 cut(s)	35, 192, 259, 486
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	362
Eco81I	CCTNAGG	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	558
EcoT14I	CCWWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	2 cut(s)	193, 521
FaiI	YATR	7 cut(s)	98, 156, 191, 234, 239, 519, 580
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	2 cut(s)	189, 517
FbaI	TGATCA	2 cut(s)	192, 486
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	168, 253
Hin1II	CATG	2 cut(s)	193, 521
HinfI	GANTC	3 cut(s)	200, 407, 539
HpaII	CCGG	2 cut(s)	168, 253
HphI	GGTGA	2 cut(s)	187, 486
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	527, 536, 543
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4V	TGCA	4 cut(s)	118, 222, 349, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 368
HpyF3I	CTNAG	2 cut(s)	265, 398
Hsp92II	CATG	2 cut(s)	193, 521
Ksp22I	TGATCA	2 cut(s)	192, 486
Kzo9I	GATC	4 cut(s)	35, 192, 259, 486
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	4 cut(s)	37, 194, 261, 488
MboI	GATC	4 cut(s)	35, 192, 259, 486
MboII	GAAGA	2 cut(s)	284, 491
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	3 cut(s)	5, 241, 417
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	25, 274, 290, 442, 513, 523
MroXI	GAANNNNTTC	1 cut(s)	314
MseI	TTAA	1 cut(s)	459
MspI	CCGG	2 cut(s)	168, 253
MspR9I	CCNGG	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	2 cut(s)	115, 368
NdeII	GATC	4 cut(s)	35, 192, 259, 486
NlaIII	CATG	2 cut(s)	193, 521
NlaIV	GGNNCC	2 cut(s)	37, 557
NmuCI	GTSAC	1 cut(s)	185
PaqCI	CACCTGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	3 cut(s)	200, 407, 539
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	37, 557
PspPI	GGNCC	2 cut(s)	148, 255
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	2 cut(s)	142, 425
RsaNI	GTAC	2 cut(s)	141, 424
Rsr2I	CGGWCCG	1 cut(s)	255
RsrII	CGGWCCG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	4 cut(s)	35, 192, 259, 486
Sau96I	GGNCC	2 cut(s)	148, 255
ScaI	AGTACT	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	7 cut(s)	364, 380, 399, 472, 499, 505, 534
SfaNI	GCATC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	255
Sse9I	AATT	3 cut(s)	5, 241, 417
SsiI	CCGC	1 cut(s)	371
SspI	AATATT	1 cut(s)	330
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	270
TasI	AATT	3 cut(s)	5, 241, 417
TatI	WGTACW	1 cut(s)	140
TfiI	GAWTC	3 cut(s)	200, 407, 539
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	72, 387
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	17, 171
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	2 cut(s)	72, 387
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	284
XapI	RAATTY	2 cut(s)	241, 417
XmnI	GAANNNNTTC	1 cut(s)	314
ZrmI	AGTACT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.