RchiOBHm_Chr4g0445491

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
65930011 .. 65939695
9685 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41308

Sequence Viewer

Length: 3471 bp
ATGGCGACGGTGACGGAATCTGCCATGCCGTTCAGATTGTTGGCCGAGGAAGAAGACGATAGCTCGAGTCCGTCGGACGCCGTCGCATTCGTCGGACTGTGCTTGGTGTTAGGAATCGCATGCAGGCATGTGTTGCGTGGCACCAGAGTGCCCTACACCGTCGCTCTTCTAATTCTCGGCATTGCCATCGGTTCCATAGAATATGGTACACACCATCATTTGGGCAAGATTGGGGATGGCATTCGAATTTGGGCATCTATTGATCCTGACCTTCTATTGGCCGTTTTTCTTCCTGCCCTTCTTTTTGAGAGTTCATTTTCTATGGAAGTGCACCAAATAAAGAGATGTATTCTTCAAATGATTATACTAGCTGGCCCAGGTGTTTTGATATCAACCTTCTGTCTTGGATCTGCTTTGAAGCTCACTTTCCCTTATGGCTGGACTTGGAAAACATCATTGTTGTTGGGAGGACTTTTGAGTGCTACTGATCCCGTGGCTGTTGTTGCTCTATTAAAAGAGCTTGGTGCAAGCAAAAAACTGAGTACAATAATCGAAGGAGAGTCCTTGATGAATGATGGGACAGCAATTGTGGTTTATCAGCTATTCTATCAAATGGTCCTCGGAAAGAGCTATGACTGGGCAGCCATAATTAAATTTCTATCTGAAGTTGCATTTGGAGCTGTAGGTATTGGTCTTGCTTTTGGTATAATATCTGTCCTGTGGCTTGGGTTCATTTTCAATGACACTGTGATAGAGATCACACTAACAGTGGCTGTGAGCTATGTTGCCTACTTCACTGCTCAAGAGGGTGCAGCTGTGTCTGGCGTTTTGACAGTGATGACCTTAGGAATGTTTTATGCTGCGGTTGCAAAGACAGCTTTTAAGGGTGAAAGCCAGCAAAGCTTACATCATTTCTGGGAAATGATTGCCTACATTGCTAATACATTAATTTTCATTTTGAGCGGAGTTGTTATAGCTGAGGGTGTTCTAGATACTGATAATATTTTGGGAAATGGAAAATCTTGGGCCTATCTTGTTCTTCTGTATGTTTATGTACAAATTTCGCGGATTATAGTTGTTGGAGTATCATTTCCCTTGCTTCGGTATTTTGGCTATGGTTTAGATTGGAAGGAGGCTATAATCCTCATATGGTCAGGTCTGCGAGGCGCTGTAGCATTATCACTTGCACTATCGGTTAAGCGTACTAGTGACAGTTCTACGCGTCTCAGTTCCGACACAGGAGTCCGGTTTGTTTTCTTCACTGGTGGAATTGTCTTCTTGACACTTATTGTGAATGGTTCAACCACACAATTCGTTTTACACTTTCTAGCAATGGATAGGCTATCAGCAGCTAAGAGGCGCATACTGCATTACACGAAATATGAAATGTTGAACAAAGCATTAGAGGCTTTTGGTGATCTTGGAGATGACGAGGAATTGGGGCCTGCTGATTGGCCCACAGTGAAAAGATACATTACAAGCTTAAATGATGTGGACAGTGAACCTGTACACCCTCATACTGCAGATGAAAGTGATAATAACCTGGACATTACAAATTTGAAAGATATACGTGAACGCCATTTGAATGGCGTTCAAGCTGCTTACTGGACCATGCTTGATGAGGGCAGGATTACAAAATCTACTGCAAATATTTTGATGCAATCTGTAGATGAAGCATTTGACTTGGTTTCAAATGAGCCTTTATGTGACTGGAAAGGTTTAAAATCTCAAGTTCATTTCCCAAATTACTACAAGTTTCTTCAAACAAGCATTTGCCCTCAGAAGTTGGTAACCTATTTTACTGTGGAAAGGTTGGAATCTGCATGTTCCATTTGTGCTGCCTTTCTTCGTGCCCATAGAATAGCAAGACAGCAACTCCATGATTTTATAGGTGATAGTGATATTGCTTCTATCATCATTAATGAAAGTGAGGCAGAAGGAGAAGAAGCAAAGAAGTTCCTGGAAGATGTTCGTGTTACATTTCCTCAGGTTTTGCGCGTTGTGAAAACAAGACAAGTAACATACTCGGTTCTGAACCATTTAATTGATTATCTCCAAAACCTTGAGAAGGTTGGCCTGCTGGAAGAAAAAGAGATGCTCCATCTTCATGATGCTGTCCAGACTGACCTGAAAAAGCTTCTAAGGAATCCCCCAATGGTAAAGGTTCCAAAAATAACTGATTTGATTAATATCAATCCTCTGATGGGGGCTCTGCCTTCTTCAGTTCGTGAACAACTTGAAGGTTCTACTAAGGAAACAATGAAATTACGTGGTGTGACACTTTACAAGGAGGGCTCCAAGCCTACTGGTATTTGGCTTATTTCCACTGGGGTAGTCAAGTGGACAAGTATGAGCATAAAAAACAAGCATTCACTGCATCCAACTTTTACTCATGGGAGTACTTTGGGCCTATATGAAGTGCTTACTGGAAAGCCCTATATTTGTGATATCATCACAGATTCAGTGGTTCTGTGCTTTTTCATTGAAAATCACAAGATACATTCAATGCTCAGGTCTGATCCTTCAGTAGAAGACTTCCTATGGCAGGAAAGTGCTATTATGCTTCTGAAACTTCTCCTTCCACAAAAGTTTGAGAAGATGGCAATGCAAGATTTAAGAGTTCTTGTTGCTGAAAGGTCAACGACGACTGTTTACATAAGGGGAGAGTTTGTCGAAATTCCTTACCATTCCATTGGGTTTCTATTAGAAGGATTTATCAAGACCCAAGGCATCCAAGAAGAACTGATTACATCACCTGCACCTCTATTGTCCTCACGTGGTTACCAAAGCTTCCAAAATCTGGAAACATTAGGCACCATGGGATCCCGAACCAGTTTTTCTCATCAAGGAGCCAGTTTTTCCCATCAAGGATCCAGTTATCTTGTTGAAACAAGATCAAGAGTGATTGTATTCAACATGGCAGCATTTGAATCTGACAGTCCTCTAAATAGAGGGACTTCCTCATTTTTGTCACATGGAGTTGATCATCCACTCAGAAGTCTTAGTAGAGAACATACTGGTCTTATGAGTTGGCCTGAACAGTTCTTTAAGCCGAAGCAACAAAAGCAGAGTCCTGAAGGGACTAGCCAACAAGCTAACAGCTTATCTACAAGGGCAATGCAGTTGAGCATATATGGCAGCATGGTGAACGTCCGCCTCCGTACTCGAAGTTTTCCGAGAAGTGGTCCTACTAAACCATCACATACGGTGTCATATCCAAATGTTCCATTATCCGATTCTCGTCCGCTTGTTTCTGTCAGATCAGAAGGGGCGTCTACTGTCAGAGAGAATCTGGAAGTGAGAAAATTCGCTGAGAAAATAACTCCTCCAGGACAGTCAAGTACAAACCCAAAAGAAAGTCATGTGGTAATAGATGATTCCAGTGATGAATCTGGTGGTGAGGATGATGTAATAATAAGAATTGATTCACCAAGTAGGCTTTCTTTTCGCCACGCTCATTTCACACCCTAA

Protein Analysis

1156

Amino Acids

128.22

Weight (kDa)

6.19

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 36 - 440 1.7e-66 Sodium/hydrogen exchanger, transmembrane
cNMP_binding PF00027 757 - 839 7.7e-07 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2764
AasI GACNNNNNNGTC 1 cut(s) 1241
Acc36I ACCTGC 1 cut(s) 2764
AccB1I GGYRCC 2 cut(s) 140, 2813
AccB7I CCANNNNNTGG 2 cut(s) 220, 2800
AccBSI CCGCTC 1 cut(s) 963
AccI GTMKAC 1 cut(s) 3275
AccII CGCG 3 cut(s) 1066, 1222, 1998
AciI CCGC 5 cut(s) 863, 963, 1066, 3154, 3245
AclWI GGATC 8 cut(s) 257, 415, 482, 2513, 2817, 2830, 2865, 2878
AcoI YGGCCR 2 cut(s) 42, 279
AcsI RAATTY 6 cut(s) 246, 653, 1059, 1555, 2676, 3305
AcuI CTGAAG 4 cut(s) 684, 2205, 2508, 3096
AcvI CACGTG 1 cut(s) 2777
AcyI GRCGYC 2 cut(s) 78, 3272
AfaI GTAC 8 cut(s) 208, 544, 1056, 1204, 1509, 2401, 3163, 3343
AfiI CCNNNNNNNGG 8 cut(s) 220, 277, 1101, 2068, 2204, 2545, 2800, 3182
AflIII ACRYGT 1 cut(s) 1220
AhlI ACTAGT 1 cut(s) 1205
AjnI CCWGG 4 cut(s) 376, 1542, 1959, 3328
AjuI GAANNNNNNNTTGG 4 cut(s) 657, 689, 3424, 3456
AleI CACNNNNGTG 1 cut(s) 146
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 1229
Alw44I GTGCAC 1 cut(s) 329
AlwI GGATC 8 cut(s) 257, 415, 482, 2513, 2817, 2830, 2865, 2878
AlwNI CAGNNNCTG 1 cut(s) 773
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 9 cut(s) 42, 279, 373, 1026, 1442, 1454, 2074, 2407, 3032
ApaLI GTGCAC 1 cut(s) 329
ApeKI GCWGC 8 cut(s) 641, 812, 860, 1349, 1598, 1838, 2921, 3138
ApoI RAATTY 6 cut(s) 246, 653, 1059, 1555, 2676, 3305
ArsI GACNNNNNNTTYG 2 cut(s) 3055, 3087
AseI ATTAAT 3 cut(s) 947, 1920, 2187
Asp700I GAANNNNTTC 2 cut(s) 1968, 3424
AspLEI GCGC 3 cut(s) 1169, 1362, 1998
AspS9I GGNCC 8 cut(s) 374, 616, 1026, 1442, 1455, 1608, 2407, 3185
AsuHPI GGTGA 8 cut(s) 22, 899, 1427, 1904, 2745, 3157, 3410, 3420
AsuII TTCGAA 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 3 cut(s) 616, 1608, 3185
AxyI CCTNAGG 2 cut(s) 844, 1986
BaeGI GKGCMC 3 cut(s) 153, 333, 1855
BamHI GGATCC 2 cut(s) 2822, 2870
BanI GGYRCC 2 cut(s) 140, 2813
BanII GRGCYC 2 cut(s) 2212, 2297
BarI GAAGNNNNNNTAC 2 cut(s) 3172, 3204
BbrPI CACGTG 1 cut(s) 2777
BbsI GAAGAC 3 cut(s) 60, 1267, 2538
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 978
BbvI GCAGC 8 cut(s) 653, 824, 847, 1361, 1585, 1825, 2933, 3150
BccI CCATC 9 cut(s) 194, 222, 230, 569, 2109, 2197, 2593, 2871, 3205
BceAI ACGGC 3 cut(s) 13, 65, 266
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BciT130I CCWGG 4 cut(s) 378, 1544, 1961, 3330
BclI TGATCA 1 cut(s) 2983
BcoDI GTCTC 1 cut(s) 1229
BcuI ACTAGT 1 cut(s) 1205
BfaI CTAG 5 cut(s) 368, 989, 1206, 1328, 3084
BfmI CTRYAG 4 cut(s) 681, 1170, 1521, 1665
BfoI RGCGCY 1 cut(s) 1170
BfuAI ACCTGC 1 cut(s) 2764
BisI GCNGC 8 cut(s) 642, 813, 861, 1350, 1599, 1839, 2922, 3139
BlsI GCNGC 8 cut(s) 643, 814, 862, 1351, 1600, 1840, 2923, 3140
BmcAI AGTACT 1 cut(s) 2401
Bme1390I CCNGG 4 cut(s) 378, 1544, 1961, 3330
Bme18I GGWCC 3 cut(s) 616, 1608, 3185
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 8 cut(s) 374, 616, 1026, 1442, 1455, 1608, 2407, 3185
BmiI GGNNCC 9 cut(s) 142, 193, 1443, 2166, 2296, 2815, 2824, 2851, 2872
BmrFI CCNGG 4 cut(s) 378, 1544, 1961, 3330
BmrI ACTGGG 2 cut(s) 646, 2337
BmsI GCATC 6 cut(s) 263, 1647, 2085, 2101, 2386, 2739
BmuI ACTGGG 2 cut(s) 646, 2337
BpiI GAAGAC 3 cut(s) 60, 1267, 2538
BpmI CTGGAG 1 cut(s) 3312
Bpu10I CCTNAGC 2 cut(s) 978, 2510
Bpu14I TTCGAA 1 cut(s) 244
BpuEI CTTGAG 3 cut(s) 786, 1713, 2084
BsaAI YACGTR 3 cut(s) 1571, 2270, 2777
BsaBI GATNNNNATC 2 cut(s) 755, 2189
BsaHI GRCGYC 2 cut(s) 78, 3272
BsaJI CCNNGG 6 cut(s) 45, 376, 492, 619, 2725, 2817
BsaWI WCCGGW 1 cut(s) 1245
BsaXI ACNNNNNCTCC 4 cut(s) 1860, 1890, 2655, 2685
Bsc4I CCNNNNNNNGG 8 cut(s) 220, 277, 1101, 2068, 2204, 2545, 2800, 3182
Bse21I CCTNAGG 2 cut(s) 844, 1986
Bse3DI GCAATG 5 cut(s) 180, 933, 1338, 2610, 3123
Bse8I GATNNNNATC 2 cut(s) 755, 2189
BseBI CCWGG 4 cut(s) 378, 1544, 1961, 3330
BseDI CCNNGG 6 cut(s) 45, 376, 492, 619, 2725, 2817
BseGI GGATG 5 cut(s) 241, 2377, 2730, 2986, 3409
BseJI GATNNNNATC 2 cut(s) 755, 2189
BseLI CCNNNNNNNGG 8 cut(s) 220, 277, 1101, 2068, 2204, 2545, 2800, 3182
BseMI GCAATG 5 cut(s) 180, 933, 1338, 2610, 3123
BseMII CTCAG 8 cut(s) 530, 969, 1240, 1793, 2000, 2524, 3007, 3303
BseRI GAGGAG 1 cut(s) 3315
BseSI GKGCMC 3 cut(s) 153, 333, 1855
BseXI GCAGC 8 cut(s) 653, 824, 847, 1361, 1585, 1825, 2933, 3150
BsgI GTGCAG 2 cut(s) 831, 2742
Bsh1236I CGCG 3 cut(s) 1066, 1222, 1998
BshFI GGCC 9 cut(s) 44, 281, 375, 1028, 1444, 1456, 2076, 2409, 3034
BshNI GGYRCC 2 cut(s) 140, 2813
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 1246
BslFI GGGAC 3 cut(s) 592, 2968, 3094
BslI CCNNNNNNNGG 8 cut(s) 220, 277, 1101, 2068, 2204, 2545, 2800, 3182
BsmAI GTCTC 1 cut(s) 1229
BsmBI CGTCTC 1 cut(s) 1229
BsmFI GGGAC 3 cut(s) 592, 2968, 3094
BsmI GAATGC 3 cut(s) 86, 240, 2368
BsnI GGCC 9 cut(s) 44, 281, 375, 1028, 1444, 1456, 2076, 2409, 3034
BsoBI CYCGRG 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 244
Bsp1286I GDGCHC 5 cut(s) 153, 333, 1855, 2212, 2297
Bsp1407I TGTACA 2 cut(s) 1054, 1507
Bsp19I CCATGG 1 cut(s) 2817
BspACI CCGC 5 cut(s) 863, 963, 1066, 3154, 3245
BspANI GGCC 9 cut(s) 44, 281, 375, 1028, 1444, 1456, 2076, 2409, 3034
BspCNI CTCAG 8 cut(s) 531, 970, 1239, 1792, 1999, 2523, 3006, 3304
BspFNI CGCG 3 cut(s) 1066, 1222, 1998
BspHI TCATGA 1 cut(s) 2107
BspLI GGNNCC 9 cut(s) 142, 193, 1443, 2166, 2296, 2815, 2824, 2851, 2872
BspMAI CTGCAG 1 cut(s) 1525
BspMI ACCTGC 1 cut(s) 2764
BspPI GGATC 8 cut(s) 257, 415, 482, 2513, 2817, 2830, 2865, 2878
BspQI GCTCTTC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 244
BspT107I GGYRCC 2 cut(s) 140, 2813
BsrBI CCGCTC 1 cut(s) 963
BsrDI GCAATG 5 cut(s) 180, 933, 1338, 2610, 3123
BsrGI TGTACA 2 cut(s) 1054, 1507
BssECI CCNNGG 6 cut(s) 45, 376, 492, 619, 2725, 2817
BssNI GRCGYC 2 cut(s) 78, 3272
BssT1I CCWWGG 2 cut(s) 2725, 2817
Bst2UI CCWGG 4 cut(s) 378, 1544, 1961, 3330
Bst6I CTCTTC 1 cut(s) 171
BstACI GRCGYC 2 cut(s) 78, 3272
BstAPI GCANNNNNTGC 2 cut(s) 133, 2374
BstAUI TGTACA 2 cut(s) 1054, 1507
BstBAI YACGTR 3 cut(s) 1571, 2270, 2777
BstBI TTCGAA 1 cut(s) 244
BstC8I GCNNGC 7 cut(s) 121, 125, 373, 529, 896, 1446, 2078
BstDSI CCRYGG 2 cut(s) 492, 2817
BstEII GGTNACC 2 cut(s) 1789, 2780
BstENI CCTNNNNNAGG 2 cut(s) 2066, 2543
BstF5I GGATG 5 cut(s) 241, 2377, 2730, 2986, 3409
BstFNI CGCG 3 cut(s) 1066, 1222, 1998
BstH2I RGCGCY 1 cut(s) 1170
BstHHI GCGC 3 cut(s) 1169, 1362, 1998
BstMAI GTCTC 1 cut(s) 1229
BstNI CCWGG 4 cut(s) 378, 1544, 1961, 3330
BstNSI RCATGY 3 cut(s) 123, 131, 1827
BstPI GGTNACC 2 cut(s) 1789, 2780
BstSCI CCNGG 4 cut(s) 376, 1542, 1959, 3328
BstSFI CTRYAG 4 cut(s) 681, 1170, 1521, 1665
BstSLI GKGCMC 3 cut(s) 153, 333, 1855
BstUI CGCG 3 cut(s) 1066, 1222, 1998
BstV1I GCAGC 8 cut(s) 653, 824, 847, 1361, 1585, 1825, 2933, 3150
BstV2I GAAGAC 3 cut(s) 60, 1267, 2538
BstX2I RGATCY 3 cut(s) 407, 2822, 2870
BstXI CCANNNNNNTGG 2 cut(s) 1586, 2693
BstYI RGATCY 3 cut(s) 407, 2822, 2870
Bsu36I CCTNAGG 2 cut(s) 844, 1986
BsuRI GGCC 9 cut(s) 44, 281, 375, 1028, 1444, 1456, 2076, 2409, 3034
BtgI CCRYGG 2 cut(s) 492, 2817
BtsCI GGATG 5 cut(s) 241, 2377, 2730, 2986, 3409
BtsI GCAGTG 2 cut(s) 795, 2372
BveI ACCTGC 1 cut(s) 2764
Cac8I GCNNGC 7 cut(s) 121, 125, 373, 529, 896, 1446, 2078
CaiI CAGNNNCTG 1 cut(s) 773
CciI TCATGA 1 cut(s) 2107
CfoI GCGC 3 cut(s) 1169, 1362, 1998
Cfr13I GGNCC 8 cut(s) 374, 616, 1026, 1442, 1455, 1608, 2407, 3185
CseI GACGC 3 cut(s) 86, 1211, 3261
Csp6I GTAC 8 cut(s) 207, 543, 1055, 1203, 1508, 2400, 3162, 3342
CviQI GTAC 8 cut(s) 207, 543, 1055, 1203, 1508, 2400, 3162, 3342
DraI TTTAAA 1 cut(s) 1722
DrdI GACNNNNNNGTC 1 cut(s) 1241
DseDI GACNNNNNNGTC 1 cut(s) 1241
EaeI YGGCCR 2 cut(s) 42, 279
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EciI GGCGGA 1 cut(s) 3143
Eco130I CCWWGG 2 cut(s) 2725, 2817
Eco24I GRGCYC 2 cut(s) 2212, 2297
Eco32I GATATC 2 cut(s) 390, 2449
Eco47I GGWCC 3 cut(s) 616, 1608, 3185
Eco57I CTGAAG 4 cut(s) 684, 2205, 2508, 3096
Eco72I CACGTG 1 cut(s) 2777
Eco81I CCTNAGG 2 cut(s) 844, 1986
Eco88I CYCGRG 1 cut(s) 64
Eco91I GGTNACC 2 cut(s) 1789, 2780
EcoNI CCTNNNNNAGG 2 cut(s) 2066, 2543
EcoO109I RGGNCCY 1 cut(s) 1442
EcoO65I GGTNACC 2 cut(s) 1789, 2780
EcoRII CCWGG 4 cut(s) 376, 1542, 1959, 3328
EcoRV GATATC 2 cut(s) 390, 2449
EcoT14I CCWWGG 2 cut(s) 2725, 2817
EcoT38I GRGCYC 2 cut(s) 2212, 2297
ErhI CCWWGG 2 cut(s) 2725, 2817
Esp3I CGTCTC 1 cut(s) 1229
FaqI GGGAC 3 cut(s) 592, 2968, 3094
FauNDI CATATG 1 cut(s) 1148
FbaI TGATCA 1 cut(s) 2983
FblI GTMKAC 1 cut(s) 3275
Fnu4HI GCNGC 8 cut(s) 642, 813, 861, 1350, 1599, 1839, 2922, 3139
FokI GGATG 5 cut(s) 248, 2364, 2717, 2973, 3416
FriOI GRGCYC 2 cut(s) 2212, 2297
Fsp4HI GCNGC 8 cut(s) 642, 813, 861, 1350, 1599, 1839, 2922, 3139
FspBI CTAG 5 cut(s) 368, 989, 1206, 1328, 3084
GlaI GCGC 3 cut(s) 1168, 1361, 1997
GluI GCNGC 8 cut(s) 642, 813, 861, 1350, 1599, 1839, 2922, 3139
GsuI CTGGAG 1 cut(s) 3312
HaeII RGCGCY 1 cut(s) 1170
HaeIII GGCC 9 cut(s) 44, 281, 375, 1028, 1444, 1456, 2076, 2409, 3034
HapII CCGG 1 cut(s) 1246
HgaI GACGC 3 cut(s) 86, 1211, 3261
HhaI GCGC 3 cut(s) 1169, 1362, 1998
Hin1I GRCGYC 2 cut(s) 78, 3272
Hin6I GCGC 3 cut(s) 1167, 1360, 1996
HinP1I GCGC 3 cut(s) 1167, 1360, 1996
HincII GTYRAC 1 cut(s) 2640
HindII GTYRAC 1 cut(s) 2640
HindIII AAGCTT 4 cut(s) 901, 1480, 2135, 2788
HpaII CCGG 1 cut(s) 1246
HphI GGTGA 8 cut(s) 22, 899, 1427, 1904, 2745, 3157, 3410, 3420
Hpy99I CGWCG 6 cut(s) 10, 76, 86, 95, 164, 2647
HpyCH4IV ACGT 4 cut(s) 1570, 2269, 2776, 3150
HpySE526I ACGT 4 cut(s) 1570, 2269, 2776, 3150
Hsp92I GRCGYC 2 cut(s) 78, 3272
HspAI GCGC 3 cut(s) 1167, 1360, 1996
Ksp22I TGATCA 1 cut(s) 2983
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 4 cut(s) 677, 2103, 2300, 2849
Lsp1109I GCAGC 8 cut(s) 653, 824, 847, 1361, 1585, 1825, 2933, 3150
LweI GCATC 6 cut(s) 263, 1647, 2085, 2101, 2386, 2739
MaeI CTAG 5 cut(s) 368, 989, 1206, 1328, 3084
MaeII ACGT 4 cut(s) 1570, 2269, 2776, 3150
MaeIII GTNAC 9 cut(s) 10, 1208, 1706, 1789, 1975, 2017, 2275, 2780, 2970
MbiI CCGCTC 1 cut(s) 963
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 3 cut(s) 407, 2822, 2870
MhlI GDGCHC 5 cut(s) 153, 333, 1855, 2212, 2297
MluI ACGCGT 1 cut(s) 1220
MlyI GAGTC 4 cut(s) 76, 569, 1251, 3079
MmeI TCCRAC 6 cut(s) 54, 73, 1060, 1257, 1794, 2405
MroXI GAANNNNTTC 2 cut(s) 1968, 3424
MslI CAYNNNNRTG 3 cut(s) 146, 1584, 2106
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 1 cut(s) 1246
MspR9I CCNGG 4 cut(s) 378, 1544, 1961, 3330
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 3 cut(s) 86, 240, 2368
MvaI CCWGG 4 cut(s) 378, 1544, 1961, 3330
MvnI CGCG 3 cut(s) 1066, 1222, 1998
NcoI CCATGG 1 cut(s) 2817
NdeI CATATG 1 cut(s) 1148
NlaIV GGNNCC 9 cut(s) 142, 193, 1443, 2166, 2296, 2815, 2824, 2851, 2872
NmeAIII GCCGAG 2 cut(s) 70, 156
NmuCI GTSAC 5 cut(s) 10, 1208, 1706, 2275, 2970
NspI RCATGY 3 cut(s) 123, 131, 1827
NspV TTCGAA 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 146
PaeI GCATGC 1 cut(s) 123
PaeR7I CTCGAG 1 cut(s) 64
PagI TCATGA 1 cut(s) 2107
PaqCI CACCTGC 1 cut(s) 2764
PciSI GCTCTTC 1 cut(s) 171
PctI GAATGC 3 cut(s) 86, 240, 2368
PdmI GAANNNNTTC 2 cut(s) 1968, 3424
PflFI GACNNNGTC 1 cut(s) 80
PflMI CCANNNNNTGG 2 cut(s) 220, 2800
PfoI TCCNGGA 2 cut(s) 1959, 3328
PkrI GCNGC 8 cut(s) 643, 814, 862, 1351, 1600, 1840, 2923, 3140
PleI GAGTC 4 cut(s) 75, 568, 1250, 3078
PmaCI CACGTG 1 cut(s) 2777
PmlI CACGTG 1 cut(s) 2777
PpsI GAGTC 4 cut(s) 75, 568, 1250, 3078
Ppu21I YACGTR 3 cut(s) 1571, 2270, 2777
PshBI ATTAAT 3 cut(s) 947, 1920, 2187
Psp6I CCWGG 4 cut(s) 376, 1542, 1959, 3328
PspCI CACGTG 1 cut(s) 2777
PspEI GGTNACC 2 cut(s) 1789, 2780
PspGI CCWGG 4 cut(s) 376, 1542, 1959, 3328
PspN4I GGNNCC 9 cut(s) 142, 193, 1443, 2166, 2296, 2815, 2824, 2851, 2872
PspPI GGNCC 8 cut(s) 374, 616, 1026, 1442, 1455, 1608, 2407, 3185
PspXI VCTCGAGB 1 cut(s) 64
PstI CTGCAG 1 cut(s) 1525
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 3 cut(s) 407, 2822, 2870
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 8 cut(s) 208, 544, 1056, 1204, 1509, 2401, 3163, 3343
RsaNI GTAC 8 cut(s) 207, 543, 1055, 1203, 1508, 2400, 3162, 3342
RseI CAYNNNNRTG 3 cut(s) 146, 1584, 2106
SapI GCTCTTC 1 cut(s) 171
SatI GCNGC 8 cut(s) 642, 813, 861, 1350, 1599, 1839, 2922, 3139
Sau96I GGNCC 8 cut(s) 374, 616, 1026, 1442, 1455, 1608, 2407, 3185
ScaI AGTACT 1 cut(s) 2401
SchI GAGTC 4 cut(s) 76, 569, 1251, 3079
ScrFI CCNGG 4 cut(s) 378, 1544, 1961, 3330
SduI GDGCHC 5 cut(s) 153, 333, 1855, 2212, 2297
SfaNI GCATC 6 cut(s) 263, 1647, 2085, 2101, 2386, 2739
SfcI CTRYAG 4 cut(s) 681, 1170, 1521, 1665
Sfr274I CTCGAG 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 244
SinI GGWCC 3 cut(s) 616, 1608, 3185
SlaI CTCGAG 1 cut(s) 64
SmiMI CAYNNNNRTG 3 cut(s) 146, 1584, 2106
SmlI CTYRAG 4 cut(s) 64, 801, 1728, 2063
SmoI CTYRAG 4 cut(s) 64, 801, 1728, 2063
SpeI ACTAGT 1 cut(s) 1205
SphI GCATGC 1 cut(s) 123
SsiI CCGC 5 cut(s) 863, 963, 1066, 3154, 3245
SspI AATATT 2 cut(s) 1003, 1651
SspMI CTAG 5 cut(s) 368, 989, 1206, 1328, 3084
StyD4I CCNGG 4 cut(s) 376, 1542, 1959, 3328
StyI CCWWGG 2 cut(s) 2725, 2817
TaiI ACGT 4 cut(s) 1573, 2272, 2779, 3153
TaqI TCGA 5 cut(s) 65, 244, 552, 2673, 3166
TatI WGTACW 5 cut(s) 542, 1054, 1507, 2399, 3341
TseFI GTSAC 5 cut(s) 10, 1208, 1706, 2275, 2970
TseI GCWGC 8 cut(s) 641, 812, 860, 1349, 1598, 1838, 2921, 3138
Tsp45I GTSAC 5 cut(s) 10, 1208, 1706, 2275, 2970
TspGWI ACGGA 3 cut(s) 29, 60, 3149
Tth111I GACNNNGTC 1 cut(s) 80
Van91I CCANNNNNTGG 2 cut(s) 220, 2800
VneI GTGCAC 1 cut(s) 329
VpaK11BI GGWCC 3 cut(s) 616, 1608, 3185
VspI ATTAAT 3 cut(s) 947, 1920, 2187
XagI CCTNNNNNAGG 2 cut(s) 2066, 2543
XapI RAATTY 6 cut(s) 246, 653, 1059, 1555, 2676, 3305
XbaI TCTAGA 1 cut(s) 988
XceI RCATGY 3 cut(s) 123, 131, 1827
XhoI CTCGAG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 3275
XmnI GAANNNNTTC 2 cut(s) 1968, 3424
XspI CTAG 5 cut(s) 368, 989, 1206, 1328, 3084
ZrmI AGTACT 1 cut(s) 2401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.