Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005014

Physical Location & Seq

Genomic Coordinates Reverse (-)

850400 .. 851355

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1011400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTCATTTCCCGAATTACTACAAGTTCCTTCAAACTAGCATTTTCCCCCAGGAAATTGGTAACCTATTTGACTGTGGAAAGGCTGGAATCTGCATGTTACATTTGTGCTTCCTTTCTCCGTGCCCATAGAATTGCAAGGCAGCAACTTCATGATTTCATAGGTGATAGTGAAGTTGCTTCAATTGTCATTAATGAAAGTGAGGCAGAAGGAGAAGAAGCAAAAAAGTTTCTGGAAGATGTTCGTGTCACATTTCCTCAGGTTTTGCGTGTTGTGAAAACAAGACAAGTAACATTCTCAGCTCTAAACCAGTTAACTGAATATCTCCAAAACCTAGAGAAGGTTGGCATGTTGGAAGAAAAAGAGATGCTTCATCTTCATGACGCAGTCCAGACTGATATTGAAAAAGCTTCTAAGGAATCCTCCATCAATAAAGATCCAAAAATAAATGATCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019222 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031323 GO:0031967 GO:0031975 GO:0034220 GO:0035725 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1901700 GO:1902600 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger cNMP_binding

Protein Analysis

154

Amino Acids

17.52

Weight (kDa)

5.63

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14660 AT1G14660 AT2G01980
fragaria_vesca	FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35890
malus_domestica	MD13G1014200.v1.1 MD16G1011300.v1.1 MD16G1011400.v1.1 MD16G1011500.v1.1
prunus_persica	Prupe.1G339200_v2.0.a1 Prupe.1G339200_v2.0.a1
pyrus_communis	pycom13g01220 pycom13g01230 pycom16g01100 pycom16g01110
rosa_chinensis	RchiOBHm_Chr4g0445491
rosa_laevigata	RLG00000005737
rosa_multiflora	Rmu_sc0001509.1_g000010 Rmu_sc0010466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385970
rosa_rugosa	Rorug04G0361700
rosa_samantha	Rh4AG423100 Rh4BG435100 Rh4CG450000 Rh4DG431400
rosa_wichuraiana	Rw4G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	34, 183, 404
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	302, 410
AluI	AGCT	2 cut(s)	302, 410
AlwI	GGATC	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	142
AseI	ATTAAT	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	52
BfaI	CTAG	2 cut(s)	38, 335
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	310
Bse21I	CCTNAGG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	272, 312
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	436, 451
BspCNI	CTCAG	2 cut(s)	271, 311
BspHI	TCATGA	2 cut(s)	151, 379
BspPI	GGATC	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	436, 451
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	258, 298, 414
BstEII	GGTNACC	1 cut(s)	61
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	439, 454
BstMBI	GATC	2 cut(s)	436, 451
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	2 cut(s)	99, 352
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	436
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	258
CciI	TCATGA	2 cut(s)	151, 379
CseI	GACGC	1 cut(s)	392
CviAII	CATG	4 cut(s)	96, 152, 349, 380
CviJI	RGCY	3 cut(s)	85, 302, 410
CviKI_1	RGCY	3 cut(s)	85, 302, 410
DdeI	CTNAG	3 cut(s)	258, 298, 414
DpnI	GATC	2 cut(s)	438, 453
DpnII	GATC	2 cut(s)	436, 451
Eco81I	CCTNAGG	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	50
FaeI	CATG	4 cut(s)	99, 155, 352, 383
FaiI	YATR	6 cut(s)	97, 129, 153, 161, 350, 381
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	4 cut(s)	95, 151, 348, 379
Fnu4HI	GCNGC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	2 cut(s)	38, 335
GluI	GCNGC	1 cut(s)	143
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	4 cut(s)	99, 155, 352, 383
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	2 cut(s)	89, 419
HpaI	GTTAAC	1 cut(s)	315
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188III	TCNNGA	6 cut(s)	12, 152, 233, 380, 391, 455
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	3 cut(s)	40, 203, 334
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	95, 137
HpyF3I	CTNAG	3 cut(s)	258, 298, 414
Hsp92II	CATG	4 cut(s)	99, 155, 352, 383
KspAI	GTTAAC	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	436, 451
LpnPI	CCDG	7 cut(s)	37, 64, 71, 218, 245, 323, 404
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	2 cut(s)	38, 335
MaeIII	GTNAC	4 cut(s)	61, 98, 247, 289
MalI	GATC	2 cut(s)	438, 453
MboI	GATC	2 cut(s)	436, 451
MboII	GAAGA	4 cut(s)	227, 248, 368, 368
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	4 cut(s)	15, 56, 132, 183
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	3 cut(s)	196, 267, 433
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	2 cut(s)	192, 314
MslI	CAYNNNNRTG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	52
NdeII	GATC	2 cut(s)	436, 451
NlaIII	CATG	4 cut(s)	99, 155, 352, 383
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	2 cut(s)	99, 352
PagI	TCATGA	2 cut(s)	151, 379
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	89, 419
PflFI	GACNNNGTC	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	144
PshBI	ATTAAT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	50
PspEI	GGTNACC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	436
PsyI	GACNNNGTC	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	192, 314
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	436, 451
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	7 cut(s)	68, 166, 264, 304, 336, 345, 412
SfaNI	GCATC	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	378
Sse9I	AATT	4 cut(s)	15, 56, 132, 183
SspMI	CTAG	2 cut(s)	38, 335
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	4 cut(s)	15, 56, 132, 183
TfiI	GAWTC	2 cut(s)	89, 419
Tru1I	TTAA	2 cut(s)	192, 314
Tru9I	TTAA	2 cut(s)	192, 314
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	5 cut(s)	140, 148, 210, 362, 368
TspGWI	ACGGA	1 cut(s)	110
Tth111I	GACNNNGTC	1 cut(s)	386
VspI	ATTAAT	1 cut(s)	192
XagI	CCTNNNNNAGG	1 cut(s)	338
XceI	RCATGY	2 cut(s)	99, 352
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	2 cut(s)	38, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.