Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005014

Physical Location & Seq

Genomic Coordinates Reverse (-)

786651 .. 788548

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGTCAGGTTTAAGAGGGGCTGTAGCAGGCGCGTGCTGGAGTACACAAAATATAAAATGTTGAACAAAGCAAAAGAGGCTTTTGGCGATCTTGGAGATGATAAGGAGTTGGGACCTGCTGACTGGCCAACTGTGAAAAGATATATTGCAAGCTTAAATGATATTGACAACAAACCTGTACACCCTCACGAGGCATCAGAAAGTGATAACGATCTGCACCTTACAAATTTGAAGGATATACGTGAACGTCTTTTGAATGGTAAATTTAATCTAACTGTGGCCTCATTTGCTAATACAAATAATCGTTTTAAATCAGGAGTCCAAGCTGCTTACTGGAACATGCTTGATGAGGGAAGGATTACACAATCTGCTGCAAATATTTTGATGCAATCAGTAGATGAAGCGATTGACTTGGTTTCACGTGAGCCTTTATGTGACTGGAAAGGTTTAAAAGCTCATGTTCATTTCCCGAATTACTACAAGTTCCTCCAAACTAGCATTTGCCCCCGGAAATTGGTAACCTATTTCACCGTGGAAAGGCTGGAATCTGCATGTTACATTTCTGCTGCCTTTCTCCGTGCCCATAGAATTGCAAGGCAGCAACTTCATGATTTTATAGAGTGGAAATTGTTTTGGTTACTACTTACTGGATGTGTAATTGTTCTTCATCAGCTTATTTATTCAGGTGATAGTGGCATTGCTTCAATCGTCATTAATGAAAGTGAGGCAGAAGGGGAAGAAGCAAAAAAGTTTCTGGAAGATGTTCGTGTCACATTTCCTCAGGTTCTGCGTGTCGTAAAAACAAGACAAGTAACATACTCAGTTCTCAACCATTTAATTGAATATCTCCAAAACCTAAAGAAGGCTGGCATATTGGAAGAAAAAGAGATGCTTCATCTTCGTGACGCAGTCCAGGTGTGTGTTGGCGATTTTTTGTGTTGTAGTATTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019222 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031323 GO:0031967 GO:0031975 GO:0034220 GO:0035725 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1901700 GO:1902600 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger cNMP_binding

Protein Analysis

318

Amino Acids

36.4

Weight (kDa)

7.61

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14660 AT1G14660 AT2G01980
fragaria_vesca	FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35890
malus_domestica	MD13G1014200.v1.1 MD16G1011300.v1.1 MD16G1011400.v1.1 MD16G1011500.v1.1
prunus_persica	Prupe.1G339200_v2.0.a1 Prupe.1G339200_v2.0.a1
pyrus_communis	pycom13g01220 pycom13g01230 pycom16g01100 pycom16g01110
rosa_chinensis	RchiOBHm_Chr4g0445491
rosa_laevigata	RLG00000005737
rosa_multiflora	Rmu_sc0001509.1_g000010 Rmu_sc0010466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385970
rosa_rugosa	Rorug04G0361700
rosa_samantha	Rh4AG423100 Rh4BG435100 Rh4CG450000 Rh4DG431400
rosa_wichuraiana	Rw4G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccII	CGCG	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	2 cut(s)	226, 263
AcvI	CACGTG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	44, 180
AfiI	CCNNNNNNNGG	4 cut(s)	190, 514, 537, 862
AgsI	TTSAA	5 cut(s)	64, 232, 256, 705, 842
AjnI	CCWGG	1 cut(s)	912
AluBI	AGCT	4 cut(s)	153, 326, 455, 673
AluI	AGCT	4 cut(s)	153, 326, 455, 673
AlwNI	CAGNNNCTG	1 cut(s)	787
AoxI	GGCC	2 cut(s)	125, 279
ApeKI	GCWGC	4 cut(s)	326, 371, 566, 598
ApoI	RAATTY	2 cut(s)	226, 263
AseI	ATTAAT	1 cut(s)	714
Asp700I	GAANNNNTTC	1 cut(s)	762
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	520, 698
AvaII	GGWCC	1 cut(s)	113
AxyI	CCTNAGG	1 cut(s)	780
BaeGI	GKGCMC	1 cut(s)	583
BalI	TGGCCA	1 cut(s)	127
BarI	GAAGNNNNNNTAC	2 cut(s)	648, 680
BauI	CACGAG	1 cut(s)	188
BbrPI	CACGTG	1 cut(s)	422
BbvI	GCAGC	4 cut(s)	313, 358, 553, 610
BciT130I	CCWGG	1 cut(s)	914
BcnI	CCSGG	1 cut(s)	508
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	22
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	4 cut(s)	327, 372, 567, 599
BlsI	GCNGC	4 cut(s)	328, 373, 568, 600
Bme1390I	CCNGG	2 cut(s)	508, 914
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	2 cut(s)	508, 914
BmsI	GCATC	3 cut(s)	203, 375, 879
BpmI	CTGGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	508
BsaAI	YACGTR	2 cut(s)	242, 422
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	506, 531
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 514, 537, 862
Bse1I	ACTGG	4 cut(s)	128, 338, 443, 652
Bse21I	CCTNAGG	1 cut(s)	780
Bse3DI	GCAATG	1 cut(s)	696
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	914
BseDI	CCNNGG	2 cut(s)	506, 531
BseGI	GGATG	1 cut(s)	656
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	4 cut(s)	190, 514, 537, 862
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	2 cut(s)	794, 834
BseNI	ACTGG	4 cut(s)	128, 338, 443, 652
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	4 cut(s)	313, 358, 553, 610
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	127, 281
BsiSI	CCGG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	4 cut(s)	190, 514, 537, 862
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	127, 281
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	88, 211
BspANI	GGCC	2 cut(s)	127, 281
BspCNI	CTCAG	2 cut(s)	793, 833
BspFNI	CGCG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	696
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	4 cut(s)	128, 338, 443, 652
BssECI	CCNNGG	2 cut(s)	506, 531
BssMI	GATC	2 cut(s)	88, 211
BssSI	CACGAG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	914
Bst4CI	ACNGT	3 cut(s)	133, 277, 532
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	2 cut(s)	242, 422
BstC8I	GCNNGC	4 cut(s)	29, 35, 151, 868
BstDEI	CTNAG	2 cut(s)	780, 820
BstDSI	CCRYGG	1 cut(s)	531
BstEII	GGTNACC	1 cut(s)	517
BstENI	CCTNNNNNAGG	1 cut(s)	860
BstF5I	GGATG	1 cut(s)	656
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	2 cut(s)	91, 214
BstMBI	GATC	2 cut(s)	88, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 287
BstNI	CCWGG	1 cut(s)	914
BstNSI	RCATGY	2 cut(s)	343, 555
BstPI	GGTNACC	1 cut(s)	517
BstSCI	CCNGG	2 cut(s)	506, 912
BstSFI	CTRYAG	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	583
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	4 cut(s)	313, 358, 553, 610
Bsu36I	CCTNAGG	1 cut(s)	780
BsuRI	GGCC	2 cut(s)	127, 281
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	656
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	4 cut(s)	29, 35, 151, 868
CaiI	CAGNNNCTG	1 cut(s)	787
CciI	TCATGA	1 cut(s)	607
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	113
CseI	GACGC	1 cut(s)	914
Csp6I	GTAC	2 cut(s)	43, 179
CviAII	CATG	4 cut(s)	340, 458, 552, 608
CviQI	GTAC	2 cut(s)	43, 179
DdeI	CTNAG	2 cut(s)	780, 820
DpnI	GATC	2 cut(s)	90, 213
DpnII	GATC	2 cut(s)	88, 211
DraI	TTTAAA	2 cut(s)	310, 450
EaeI	YGGCCR	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	113
Eco72I	CACGTG	1 cut(s)	422
Eco81I	CCTNAGG	1 cut(s)	780
Eco91I	GGTNACC	1 cut(s)	517
EcoNI	CCTNNNNNAGG	1 cut(s)	860
EcoO109I	RGGNCCY	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	912
FaeI	CATG	4 cut(s)	343, 461, 555, 611
FalI	AAGNNNNNCTT	2 cut(s)	876, 908
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	4 cut(s)	339, 457, 551, 607
Fnu4HI	GCNGC	4 cut(s)	327, 372, 567, 599
FokI	GGATG	1 cut(s)	663
Fsp4HI	GCNGC	4 cut(s)	327, 372, 567, 599
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	4 cut(s)	327, 372, 567, 599
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	127, 281
HapII	CCGG	1 cut(s)	508
HgaI	GACGC	1 cut(s)	914
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	343, 461, 555, 611
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	2 cut(s)	318, 545
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	2 cut(s)	520, 698
Hpy166II	GTNNAC	3 cut(s)	45, 181, 245
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	6 cut(s)	188, 315, 469, 608, 755, 902
Hpy8I	GTNNAC	3 cut(s)	45, 181, 245
HpyAV	CCTTC	4 cut(s)	226, 348, 725, 856
HpyCH4III	ACNGT	3 cut(s)	133, 277, 532
HpyCH4IV	ACGT	3 cut(s)	241, 247, 421
HpyCH4V	TGCA	6 cut(s)	149, 217, 374, 388, 551, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 287
HpyF3I	CTNAG	2 cut(s)	780, 820
HpySE526I	ACGT	3 cut(s)	241, 247, 421
Hsp92II	CATG	4 cut(s)	343, 461, 555, 611
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	88, 211
Lsp1109I	GCAGC	4 cut(s)	313, 358, 553, 610
LweI	GCATC	3 cut(s)	203, 375, 879
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	3 cut(s)	241, 247, 421
MaeIII	GTNAC	7 cut(s)	434, 517, 554, 636, 769, 811, 902
MalI	GATC	2 cut(s)	90, 213
MboI	GATC	2 cut(s)	88, 211
MboII	GAAGA	5 cut(s)	656, 749, 770, 890, 890
MhlI	GDGCHC	1 cut(s)	583
MlsI	TGGCCA	1 cut(s)	127
MluCI	AATT	8 cut(s)	226, 263, 472, 512, 588, 626, 657, 837
MluNI	TGGCCA	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	327
MnlI	CCTC	9 cut(s)	9, 70, 184, 195, 292, 343, 497, 718, 789
Mox20I	TGGCCA	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	762
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	7 cut(s)	12, 155, 267, 309, 449, 714, 836
MslI	CAYNNNNRTG	1 cut(s)	900
Msp20I	TGGCCA	1 cut(s)	127
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	2 cut(s)	508, 914
MvaI	CCWGG	1 cut(s)	914
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	77, 287
NciI	CCSGG	1 cut(s)	508
NdeII	GATC	2 cut(s)	88, 211
NlaIII	CATG	4 cut(s)	343, 461, 555, 611
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	3 cut(s)	434, 769, 902
NspI	RCATGY	2 cut(s)	343, 555
PagI	TCATGA	1 cut(s)	607
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	1 cut(s)	545
PflFI	GACNNNGTC	1 cut(s)	908
PkrI	GCNGC	4 cut(s)	328, 373, 568, 600
PleI	GAGTC	1 cut(s)	326
PmaCI	CACGTG	1 cut(s)	422
PmlI	CACGTG	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	326
Ppu21I	YACGTR	2 cut(s)	242, 422
PpuMI	RGGWCCY	1 cut(s)	113
PshBI	ATTAAT	1 cut(s)	714
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	912
PspCI	CACGTG	1 cut(s)	422
PspEI	GGTNACC	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	912
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	113
PspPPI	RGGWCCY	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	787
PsyI	GACNNNGTC	1 cut(s)	908
RsaI	GTAC	2 cut(s)	44, 180
RsaNI	GTAC	2 cut(s)	43, 179
RseI	CAYNNNNRTG	1 cut(s)	900
SaqAI	TTAA	7 cut(s)	12, 155, 267, 309, 449, 714, 836
SatI	GCNGC	4 cut(s)	327, 372, 567, 599
Sau3AI	GATC	2 cut(s)	88, 211
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	508, 914
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	3 cut(s)	203, 375, 879
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	900
Sse9I	AATT	8 cut(s)	226, 263, 472, 512, 588, 626, 657, 837
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	506, 912
TaaI	ACNGT	3 cut(s)	133, 277, 532
TaiI	ACGT	3 cut(s)	244, 250, 424
TasI	AATT	8 cut(s)	226, 263, 472, 512, 588, 626, 657, 837
TatI	WGTACW	2 cut(s)	42, 178
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	7 cut(s)	12, 155, 267, 309, 449, 714, 836
Tru9I	TTAA	7 cut(s)	12, 155, 267, 309, 449, 714, 836
TseFI	GTSAC	3 cut(s)	434, 769, 902
TseI	GCWGC	4 cut(s)	326, 371, 566, 598
Tsp45I	GTSAC	3 cut(s)	434, 769, 902
TspDTI	ATGAA	6 cut(s)	414, 452, 596, 656, 732, 884
TspGWI	ACGGA	1 cut(s)	566
Tth111I	GACNNNGTC	1 cut(s)	908
VpaK11BI	GGWCC	1 cut(s)	113
VspI	ATTAAT	1 cut(s)	714
XagI	CCTNNNNNAGG	1 cut(s)	860
XapI	RAATTY	2 cut(s)	226, 263
XceI	RCATGY	2 cut(s)	343, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	920
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.