pycom16g01100

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
659318 .. 661141
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01100.3

Sequence Viewer

Length: 1233 bp
ATGTTGGAAGAAAAAGAGACGCTTCATCTTCATGACGCAGTCCAGACTGATATGAAAAAGCTTCTACGGAATCCTCCATCAGTAAAGATCCCAAAGATAAATGATTTGATTAGTCTCCATCCTCTAACGGGGGCTCTTCCGCCTTCAGTTCGTGAACCAGTTGAAGCTTCTACCAAGGAAACCATGAAATTGTGTGGTATGACGCTTTATGAGGAGGGATCCAAGCCTACTGGTATTTGGCTTCTTTCCACTGGTGTAGTCAAGTGGACAAGTAAGAGCATAAAAAACAAGCCCTCGCTGCATCCAACTTTTACTCACGGGAGTACTTTGGGCCTGTATGAAGCGCTAACCGGAAAGCCCTACATTTGTGACATGATCACAGATTCTGTGGTTCTCTGCTTTTATATTGAAACTCATAAGATAAATTCAATGCTCCGGTCTGATCCGTCAGTAGAAGACTTCCTCTGGCAGGAAAGTTCTATTGCTCTTTTGAAACTTTTCCTTCCACAAATATTTGAGAAAATGGCAATGCAAGATTTGAGAACTCTTGTTGCGGAAAGGTCAGTGATGATGATATACCTAAGGGACGAATCTTTTGAAATTCCGTACCATTCCATTGGATTTCTGTTAGAGGGTTTCGTTAAAACCCAAGGTGTCCAAGAAGAACTGATCTCATCACCTGCACCTCTATTCCCCTCACATGGTTACCAGAGCTTCCAGAATCTGGAAACATCAGGCACCAGGGTAGCCAGTTTTTCTCATAAAGGATCCAGTTATCTTGTTGAAACAAGATCGAGAGTGATTATATTCGACATCGCAGCATTTGAATCTGACAGTGCTCTGTTTAGACGCTCATCCCCATTTGTATCAAGTGCATTTGATCACCATCCTCATGGGTCTTTTACCGGAGAGCATAGTGGTCTTATGAGTTGGCCTGAGCAAATTTCCAAAGCAAAGCAGCAAAAGCAGAACCCCGAAGGGATTGACCGACAAAACAACAGCTTGTCTGTGAGGGCGATGCAGTTAAGCATTTACGGCAGTATTGTGAATGTGAATTGGAGGAGGCGTGCTCGAAGTTTTCCGAGAAGTGGTCCGATTAATCCATCACACACCGTGTCATATCCAAGCATGCCATCATATCAAGGCCGTTCACATTATGTGTATATCCGAGTGTTCCATCACATCACCGCCGTCCGCTGGTTTCAGTCAGATCAGAAGGGGCAACAGCTGTGA

Protein Analysis

411

Amino Acids

46.44

Weight (kDa)

8.77

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 688
Acc36I ACCTGC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 737
AccB7I CCANNNNNTGG 1 cut(s) 724
AciI CCGC 4 cut(s) 140, 554, 1188, 1195
AclWI GGATC 6 cut(s) 82, 213, 226, 437, 762, 775
AcsI RAATTY 3 cut(s) 424, 600, 942
AcuI CTGAAG 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 1114
AfaI GTAC 2 cut(s) 325, 608
AfeI AGCGCT 1 cut(s) 345
AfiI CCNNNNNNNGG 6 cut(s) 128, 469, 701, 724, 1088, 1197
AgsI TTSAA 7 cut(s) 164, 410, 429, 493, 599, 785, 827
AjnI CCWGG 1 cut(s) 740
AluBI AGCT 5 cut(s) 61, 167, 714, 1002, 1228
AluI AGCT 5 cut(s) 61, 167, 714, 1002, 1228
Alw21I GWGCWC 2 cut(s) 841, 1072
Alw26I GTCTC 2 cut(s) 11, 119
AlwI GGATC 6 cut(s) 82, 213, 226, 437, 762, 775
AlwNI CAGNNNCTG 2 cut(s) 386, 724
Aor51HI AGCGCT 1 cut(s) 345
AoxI GGCC 3 cut(s) 331, 932, 1144
ApeKI GCWGC 3 cut(s) 298, 818, 958
ApoI RAATTY 3 cut(s) 424, 600, 942
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
AseI ATTAAT 1 cut(s) 1098
Asp700I GAANNNNTTC 1 cut(s) 497
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 2 cut(s) 331, 1091
AsuHPI GGTGA 3 cut(s) 669, 875, 1177
AvaII GGWCC 1 cut(s) 1091
AxyI CCTNAGG 1 cut(s) 581
BamHI GGATCC 2 cut(s) 218, 767
BanI GGYRCC 1 cut(s) 737
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 841, 1072
BbvI GCAGC 3 cut(s) 285, 830, 970
BccI CCATC 6 cut(s) 85, 126, 894, 1111, 1141, 1185
BceAI ACGGC 3 cut(s) 1051, 1131, 1175
BciT130I CCWGG 1 cut(s) 742
BclI TGATCA 2 cut(s) 375, 880
BcoDI GTCTC 2 cut(s) 11, 119
BfoI RGCGCY 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 688
BisI GCNGC 3 cut(s) 299, 819, 959
BlsI GCNGC 3 cut(s) 300, 820, 960
BmcAI AGTACT 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 742
Bme18I GGWCC 1 cut(s) 1091
BmgT120I GGNCC 2 cut(s) 331, 1091
BmiI GGNNCC 3 cut(s) 220, 739, 769
BmrFI CCNGG 1 cut(s) 742
BmsI GCATC 2 cut(s) 310, 1008
BpiI GAAGAC 1 cut(s) 462
BplI GAGNNNNNCTC 2 cut(s) 1054, 1086
Bpu10I CCTNAGC 1 cut(s) 936
BsaBI GATNNNNATC 1 cut(s) 885
BsaJI CCNNGG 3 cut(s) 174, 649, 741
BsaWI WCCGGW 3 cut(s) 350, 435, 905
BsaXI ACNNNNNCTCC 2 cut(s) 1051, 1081
Bsc4I CCNNNNNNNGG 6 cut(s) 128, 469, 701, 724, 1088, 1197
Bse1I ACTGG 5 cut(s) 158, 235, 256, 750, 771
Bse21I CCTNAGG 1 cut(s) 581
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 1 cut(s) 742
BseDI CCNNGG 3 cut(s) 174, 649, 741
BseGI GGATG 4 cut(s) 118, 301, 854, 886
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 6 cut(s) 128, 469, 701, 724, 1088, 1197
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 927
BseNI ACTGG 5 cut(s) 158, 235, 256, 750, 771
BseRI GAGGAG 2 cut(s) 227, 1075
BseXI GCAGC 3 cut(s) 285, 830, 970
BsgI GTGCAG 1 cut(s) 666
BshFI GGCC 3 cut(s) 333, 934, 1146
BshNI GGYRCC 1 cut(s) 737
BsiHKAI GWGCWC 2 cut(s) 841, 1072
BsiSI CCGG 3 cut(s) 351, 436, 906
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 6 cut(s) 128, 469, 701, 724, 1088, 1197
BsmAI GTCTC 2 cut(s) 11, 119
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 3 cut(s) 333, 934, 1146
Bsp1286I GDGCHC 3 cut(s) 136, 841, 1072
Bsp143I GATC 9 cut(s) 87, 218, 375, 442, 669, 767, 791, 880, 1210
BspACI CCGC 4 cut(s) 140, 554, 1188, 1195
BspANI GGCC 3 cut(s) 333, 934, 1146
BspCNI CTCAG 1 cut(s) 928
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 3 cut(s) 220, 739, 769
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 6 cut(s) 82, 213, 226, 437, 762, 775
BspQI GCTCTTC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 5 cut(s) 158, 235, 256, 750, 771
BssECI CCNNGG 3 cut(s) 174, 649, 741
BssMI GATC 9 cut(s) 87, 218, 375, 442, 669, 767, 791, 880, 1210
BssT1I CCWWGG 2 cut(s) 174, 649
Bst2UI CCWGG 1 cut(s) 742
Bst4CI ACNGT 2 cut(s) 836, 1114
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 1068, 1130
BstDEI CTNAG 2 cut(s) 581, 936
BstEII GGTNACC 1 cut(s) 704
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 4 cut(s) 118, 301, 854, 886
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 9 cut(s) 90, 221, 378, 445, 672, 770, 794, 883, 1213
BstMAI GTCTC 2 cut(s) 11, 119
BstMBI GATC 9 cut(s) 87, 218, 375, 442, 669, 767, 791, 880, 1210
BstMWI GCNNNNNNNGC 3 cut(s) 298, 964, 1035
BstNI CCWGG 1 cut(s) 742
BstNSI RCATGY 1 cut(s) 1132
BstPI GGTNACC 1 cut(s) 704
BstSCI CCNGG 1 cut(s) 740
BstV1I GCAGC 3 cut(s) 285, 830, 970
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 3 cut(s) 87, 218, 767
BstXI CCANNNNNNTGG 2 cut(s) 617, 893
BstYI RGATCY 3 cut(s) 87, 218, 767
Bsu36I CCTNAGG 1 cut(s) 581
BsuRI GGCC 3 cut(s) 333, 934, 1146
BtgZI GCGATG 2 cut(s) 799, 1031
BtsCI GGATG 4 cut(s) 118, 301, 854, 886
BtsIMutI CAGTG 3 cut(s) 249, 570, 841
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 2 cut(s) 1068, 1130
CaiI CAGNNNCTG 2 cut(s) 386, 724
CciI TCATGA 1 cut(s) 31
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 331, 1091
CseI GACGC 4 cut(s) 28, 44, 211, 858
Csp6I GTAC 2 cut(s) 324, 607
CviAII CATG 6 cut(s) 32, 184, 373, 701, 893, 1129
CviQI GTAC 2 cut(s) 324, 607
DdeI CTNAG 2 cut(s) 581, 936
DpnI GATC 9 cut(s) 89, 220, 377, 444, 671, 769, 793, 882, 1212
DpnII GATC 9 cut(s) 87, 218, 375, 442, 669, 767, 791, 880, 1210
DraIII CACNNNGTG 1 cut(s) 1114
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 174, 649
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 1091
Eco47III AGCGCT 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 129
Eco81I CCTNAGG 1 cut(s) 581
Eco91I GGTNACC 1 cut(s) 704
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoO65I GGTNACC 1 cut(s) 704
EcoRII CCWGG 1 cut(s) 740
EcoT14I CCWWGG 2 cut(s) 174, 649
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 2 cut(s) 174, 649
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 6 cut(s) 35, 187, 376, 704, 896, 1132
FalI AAGNNNNNCTT 1 cut(s) 38
FaqI GGGAC 1 cut(s) 599
FatI CATG 6 cut(s) 31, 183, 372, 700, 892, 1128
FbaI TGATCA 2 cut(s) 375, 880
Fnu4HI GCNGC 3 cut(s) 299, 819, 959
FokI GGATG 4 cut(s) 105, 288, 841, 873
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 3 cut(s) 299, 819, 959
GlaI GCGC 1 cut(s) 345
GluI GCNGC 3 cut(s) 299, 819, 959
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 3 cut(s) 333, 934, 1146
HapII CCGG 3 cut(s) 351, 436, 906
HgaI GACGC 4 cut(s) 28, 44, 211, 858
HhaI GCGC 1 cut(s) 346
Hin1II CATG 6 cut(s) 35, 187, 376, 704, 896, 1132
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HindIII AAGCTT 2 cut(s) 59, 165
HinfI GANTC 5 cut(s) 70, 383, 590, 721, 827
HpaII CCGG 3 cut(s) 351, 436, 906
HphI GGTGA 3 cut(s) 669, 875, 1177
Hpy166II GTNNAC 3 cut(s) 155, 267, 1151
Hpy188I TCNGA 7 cut(s) 442, 832, 1083, 1095, 1169, 1210, 1215
Hpy188III TCNNGA 6 cut(s) 32, 43, 152, 718, 725, 795
Hpy8I GTNNAC 3 cut(s) 155, 267, 1151
HpyAV CCTTC 4 cut(s) 153, 512, 971, 1210
HpyCH4III ACNGT 2 cut(s) 836, 1114
HpyCH4V TGCA 5 cut(s) 301, 532, 683, 875, 1021
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 964, 1035
HpyF3I CTNAG 2 cut(s) 581, 936
Hsp92II CATG 6 cut(s) 35, 187, 376, 704, 896, 1132
HspAI GCGC 1 cut(s) 344
Ksp22I TGATCA 2 cut(s) 375, 880
Kzo9I GATC 9 cut(s) 87, 218, 375, 442, 669, 767, 791, 880, 1210
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 438
Lsp1109I GCAGC 3 cut(s) 285, 830, 970
LweI GCATC 2 cut(s) 310, 1008
MaeIII GTNAC 2 cut(s) 368, 704
MalI GATC 9 cut(s) 89, 220, 377, 444, 671, 769, 793, 882, 1212
MboI GATC 9 cut(s) 87, 218, 375, 442, 669, 767, 791, 880, 1210
MboII GAAGA 5 cut(s) 20, 20, 128, 467, 674
MflI RGATCY 3 cut(s) 87, 218, 767
MhlI GDGCHC 3 cut(s) 136, 841, 1072
MluCI AATT 5 cut(s) 188, 424, 600, 942, 1054
MmeI TCCRAC 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 497
MseI TTAA 3 cut(s) 642, 1025, 1098
MslI CAYNNNNRTG 2 cut(s) 30, 891
MspA1I CMGCKG 2 cut(s) 1197, 1228
MspI CCGG 3 cut(s) 351, 436, 906
MspR9I CCNGG 1 cut(s) 742
MvaI CCWGG 1 cut(s) 742
MwoI GCNNNNNNNGC 3 cut(s) 298, 964, 1035
NdeII GATC 9 cut(s) 87, 218, 375, 442, 669, 767, 791, 880, 1210
NlaIII CATG 6 cut(s) 35, 187, 376, 704, 896, 1132
NlaIV GGNNCC 3 cut(s) 220, 739, 769
NmuCI GTSAC 1 cut(s) 368
NspI RCATGY 1 cut(s) 1132
PaeI GCATGC 1 cut(s) 1132
PagI TCATGA 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 688
PciSI GCTCTTC 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 497
PfeI GAWTC 5 cut(s) 70, 383, 590, 721, 827
PflFI GACNNNGTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 724
PkrI GCNGC 3 cut(s) 300, 820, 960
PshBI ATTAAT 1 cut(s) 1098
Psp6I CCWGG 1 cut(s) 740
PspEI GGTNACC 1 cut(s) 704
PspGI CCWGG 1 cut(s) 740
PspN4I GGNNCC 3 cut(s) 220, 739, 769
PspPI GGNCC 2 cut(s) 331, 1091
PstNI CAGNNNCTG 2 cut(s) 386, 724
PsuI RGATCY 3 cut(s) 87, 218, 767
PsyI GACNNNGTC 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 1228
RsaI GTAC 2 cut(s) 325, 608
RsaNI GTAC 2 cut(s) 324, 607
RseI CAYNNNNRTG 2 cut(s) 30, 891
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 3 cut(s) 642, 1025, 1098
SatI GCNGC 3 cut(s) 299, 819, 959
Sau3AI GATC 9 cut(s) 87, 218, 375, 442, 669, 767, 791, 880, 1210
Sau96I GGNCC 2 cut(s) 331, 1091
ScaI AGTACT 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 742
SduI GDGCHC 3 cut(s) 136, 841, 1072
SfaNI GCATC 2 cut(s) 310, 1008
SinI GGWCC 1 cut(s) 1091
SmiMI CAYNNNNRTG 2 cut(s) 30, 891
SphI GCATGC 1 cut(s) 1132
Sse9I AATT 5 cut(s) 188, 424, 600, 942, 1054
SsiI CCGC 4 cut(s) 140, 554, 1188, 1195
SspI AATATT 1 cut(s) 513
StyD4I CCNGG 1 cut(s) 740
StyI CCWWGG 2 cut(s) 174, 649
TaaI ACNGT 2 cut(s) 836, 1114
TaqI TCGA 3 cut(s) 794, 810, 1072
TaqII GACCGA 1 cut(s) 1002
TasI AATT 5 cut(s) 188, 424, 600, 942, 1054
TatI WGTACW 1 cut(s) 323
TfiI GAWTC 5 cut(s) 70, 383, 590, 721, 827
Tru1I TTAA 3 cut(s) 642, 1025, 1098
Tru9I TTAA 3 cut(s) 642, 1025, 1098
TscAI CASTG 3 cut(s) 256, 570, 841
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 3 cut(s) 298, 818, 958
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 5 cut(s) 14, 20, 68, 200, 354
TspGWI ACGGA 3 cut(s) 82, 435, 594
TspRI CASTG 3 cut(s) 256, 570, 841
Tth111I GACNNNGTC 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 1091
VspI ATTAAT 1 cut(s) 1098
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 3 cut(s) 424, 600, 942
XceI RCATGY 1 cut(s) 1132
XmnI GAANNNNTTC 1 cut(s) 497
ZrmI AGTACT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.