Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005014

Physical Location & Seq

Genomic Coordinates Forward (+)

64964568 .. 64973811

Gene Structure 9244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3435 bp

ATGGCGACGGTGACGGAATCTGCCATGCCGTTCAGATTGTTGGCCGAGGAAGAAGACGATAGCTCGAGTCCGTCGGACGCCGTCGCATTCGTCGGACTGTGCTTGGTGTTAGGAATCGCATGCAGGCATGTGTTGCGTGGTACCAGAGTGCCCTACACCGTCGCTCTTCTAATTCTCGGCATTGCCATCGGTTCCATAGAATATGGTACACACCATCATTTGGGCAAGATTGGGGATGGCATTCGAATTTGGGCATCTATTGATCCTGACCTTCTATTGGCCGTTTTTCTTCCTGCCCTTCTTTTTGAGAGTTCATTTTCTATGGAAGTGCACCAAATAAAGAGGTGTATTCTTCAAATGATTATACTAGCTGGCCCAGGTGTTTTGATATCAACCTTCTGTCTTGGATCTGCTTTGAAGCTCACTTTCCCTTATGGCTGGACTTGGAAAACATCATTGTTGTTGGGAGGACTTTTGAGTGCTACTGATCCCGTGGCTGTTGTTGCTCTATTAAAAGAGCTTGGTGCAAGCAAAAAACTGAGTACAATAATCGAAGGAGAGTCCTTGATGAATGATGGGACAGCAATTGTGGTTTATCAGCTATTCTATCAAATGGTCCTCGGAAAGAGCTATGACTGGGCAGCCATAATTAAATTTCTATCTGAAGTCGCATTTGGAGCTGTAGGTATTGGTCTTGCTTTTGGTATAATATCTGTCCTGTGGCTTGGGTTCATTTTCAATGACACTGTGATAGAGATCACACTAACAGTGGCTGTGAGCTATGTTGCCTACTTCACTGCTCAAGAGGGTGCAGCTGTGTCTGGCGTTTTGACAGTGATGACTTTAGGAATGTTTTATGCTGCGGTTGCAAAGACAGCTTTTAAGGGTGAAAGCCAGCAAAGCTTACATCATTTCTGGGAAATGATTGCCTACATTGCTAATACATTAATTTTCATCTTGAGTGGAGTTGTTATAGCTGAAGGTGTTCTAGATACTGATAATATTTTGGGAAATGGAAAATCTTGGGCCTATCTTGTTCTTCTGTATGTTTATGTACAAATTTCACGGATTATAGTTGTTGGAGTATCATTTCCCTTGCTTCGGTATTTTGGCTATGGTTTAGATTGGAAGGAGGCTATAATCCTCATATGGTCAGGTCTGCGAGGCGCTGTAGCATTGTCACTTGCACTATCGGTTAAGCGTACTAGTGACAGTTCTACGCTTCTCAGTTCCGACACAGGAGTCCGGTTTGTTTTCTTCACTGGTGGAATTGTCTTCTTGACACTTATTGTGAATGGTTCAACCACACAATTCGTTTTACACTTTCTAGCAATGGATAGGCTATCAGCAGCTAAGAGGCGCATACTGCATTACACGAAATATGAAATGTTGAACAAAGCATTAGAGGCTTTTGGTGATCTTGGAGATGACGAGGAATTGGGGCCTGCTGATTGGCCCACAGTGAAAAGATACATTACAAGCTTAAATGATGTGGACAGTGAACCTGTACACCCTCATACTGCAGATGAAAGTGATAATAACCTGGACATTACAAATTTGAAAGATATACGTGAACGCCATTTGAATGGAGTTCAAGCTGCTTACTGGACCATGCTTGATGAGGGAAGGATTACAAAATTTACTGCAAATATTTTGATGCAATCTGTAGATGAAGCATTTGACTTGGTTTCAAATGAGCCTTTATGTGACTGGAAAGGTTTAAAATCTCAAGTTCATTTCCCAAATTACTACAAGTTTCTTCAAACAAGCATTTGCCCTCAGAAGTTGGTAACCTATTTTACTGTGGAAAGGTTGGAATCTGCATGTTCCATTTGTGCTGCCTTTCTTCGTGCCCATAGAATAGCAAGACAGCAACTCCATGATTTTATAGGTGATAGTGATATTGCTTCTATCATCATTAATGAAAGTGAGGCAGAAGGAGAAGAAGCAAAGAAATTCCTGGAAGATGTTCGTGTTACATTTCCTCAGGTTTTGCGCGTTGTGAAAACAAGACAAGTAACATACTCGGTTCTGAACCATTTAATTGATTATCTCCAAAACCTTGAGAAGGTTGGCCTGCTGGAAGAAAAAGAGATGCTTCATCTTCATGATGCTGTCCAGGTTCCAAAAATAACTGATTTGATTAATATCAATCCTCTGATGGGGGCTCTGCCTTCTTCAGTTCGTGAACAACTTGAAGGTTCTACTAAGGAAACAATGAAATTACGTGGTGTGACACTTTACAAGGAGGGCTCCAAGCCTACTGGTATTTGGCTTATTTCCACTGGGGTAGTCAAGTGGACAAGTAAGAGCATAAAAAACAAGCATTCACTGCATCCGACTTTTACTCATGGGAGTACTTTGGGCCTATATGAAGTGCTTACTGGAAAGCCCTATATTTGTGATATCATCACAGATTCAGTGGTTCTGTGCTTTTTCATTGAAAATCACAAGATACATTCAATGCTCAGGTCTGATCCTTCAGTAGAAGACTTCCTATGGCAGGAAAGTGCTATTATGCTTCTGAAACTTCTCCTTCCACAAAAGTTTGAGAAGATGGCAATGCAAGATTTAAGAGTTCTTGTTGCTGAAAGGTCAACAACGACTGTTTACATAAGGGGAGAGTTTGTCGAAATTCCTTACCATTCCGTTGGGTTTCTATTAGAAGGATTTGTCAAGACCCAAGGCATCCAAGAAGAACTGATTACATCACCTTCACCTCTATTGTCCTCACACGGTTACCAAAGCTTCCAAAATCTGGAAACATTAGGCACCATGGGATCCCGAACCAGTTTTTCTCGTCAAGGAGCCAGTTTTTCCCATCAAGGATCCAGTTATCTTGTTGAAACAAGATCAAGAGTGATTGTATTCAACATGACAGCATTTGAATCTGACAGTCCTCTAAATAGAGGGACTTCCTCATTTTTGTCACATGGAGTTGATCATCCACTCAGAAGTCTTAGTAGAGAACATACTGGTCTTATGAGTTGGCCTGAACAGTTCTTTAAGCCGAAGCAACAAAAGCAGAGTCCTGAAGGGACTAACCAACAAGCTAACAGCTTATCTACAAGGGCAATGCAGTTGAGCAGATATGGCAGCATGGTGAACGTCCGCCTCCGTACTCGAAGTTTTCCGAGAAGTGGTCCTACTAAACCATCACATACGGTGTCATATCCAAATGTTCCATTATCGGATTCTCGTCCGCTTGTTTCTGTCAGATCAGAAGGGGCTTCTACTGTCAGAAAGAATCTGGAAGTGAGAAAATTCGCTGAGAAAATAACTCCTCTAGGACAGTCAAGTACAAACCCAAAAGAAAGTCATGTGGTAATAGATGATTCCAGTGATGAATCTGGTGGTGAGGATGATGTAATAATAAGAATTGATTCACCAAGCAGGCTTTCTTTCGCCACGCTCATTTCACACCCTAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019222 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031323 GO:0031967 GO:0031975 GO:0034220 GO:0035725 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1901700 GO:1902600 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger cNMP_binding

Protein Analysis

1144

Amino Acids

126.81

Weight (kDa)

6.17

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	36 - 440	1.6e-66	Sodium/hydrogen exchanger, transmembrane
cNMP_binding	PF00027	743 - 825	3.9e-07	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14660 AT1G14660 AT2G01980
fragaria_vesca	FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35880 FvH4_4g35890
malus_domestica	MD13G1014200.v1.1 MD16G1011300.v1.1 MD16G1011400.v1.1 MD16G1011500.v1.1
prunus_persica	Prupe.1G339200_v2.0.a1 Prupe.1G339200_v2.0.a1
pyrus_communis	pycom13g01220 pycom13g01230 pycom16g01100 pycom16g01110
rosa_chinensis	RchiOBHm_Chr4g0445491
rosa_laevigata	RLG00000005737
rosa_multiflora	Rmu_sc0001509.1_g000010 Rmu_sc0010466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385970
rosa_rugosa	Rorug04G0361700
rosa_samantha	Rh4AG423100 Rh4BG435100 Rh4CG450000 Rh4DG431400
rosa_wichuraiana	Rw4G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1241
Acc65I	GGTACC	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	140, 2771
AccB7I	CCANNNNNTGG	2 cut(s)	220, 2758
AccII	CGCG	1 cut(s)	1998
AciI	CCGC	3 cut(s)	863, 3112, 3203
AclWI	GGATC	8 cut(s)	257, 415, 482, 2471, 2775, 2788, 2823, 2836
AcoI	YGGCCR	2 cut(s)	42, 279
AcsI	RAATTY	8 cut(s)	246, 653, 1059, 1555, 1637, 1955, 2634, 3263
AcuI	CTGAAG	5 cut(s)	684, 999, 2163, 2466, 3054
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	9 cut(s)	142, 208, 544, 1056, 1204, 1509, 2359, 3121, 3301
AfiI	CCNNNNNNNGG	8 cut(s)	220, 277, 1101, 2068, 2162, 2503, 2758, 3140
AhlI	ACTAGT	1 cut(s)	1205
AjnI	CCWGG	4 cut(s)	376, 1542, 1959, 2118
AjuI	GAANNNNNNNTTGG	4 cut(s)	657, 689, 3382, 3414
Alw21I	GWGCWC	1 cut(s)	333
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	8 cut(s)	257, 415, 482, 2471, 2775, 2788, 2823, 2836
AlwNI	CAGNNNCTG	1 cut(s)	773
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	9 cut(s)	42, 279, 373, 1026, 1442, 1454, 2074, 2365, 2990
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	7 cut(s)	641, 812, 860, 1349, 1598, 1838, 3096
ApoI	RAATTY	8 cut(s)	246, 653, 1059, 1555, 1637, 1955, 2634, 3263
ArsI	GACNNNNNNTTYG	2 cut(s)	3013, 3045
AseI	ATTAAT	3 cut(s)	947, 1920, 2145
Asp700I	GAANNNNTTC	3 cut(s)	984, 1968, 3382
Asp718I	GGTACC	1 cut(s)	140
AspLEI	GCGC	3 cut(s)	1169, 1362, 1998
AspS9I	GGNCC	8 cut(s)	374, 616, 1026, 1442, 1455, 1608, 2365, 3143
AsuHPI	GGTGA	9 cut(s)	22, 899, 1427, 1904, 2703, 2709, 3115, 3368, 3378
AsuII	TTCGAA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	3 cut(s)	616, 1608, 3143
AxyI	CCTNAGG	1 cut(s)	1986
BaeGI	GKGCMC	3 cut(s)	153, 333, 1855
BaeI	ACNNNNGTAYC	2 cut(s)	132, 165
BamHI	GGATCC	2 cut(s)	2780, 2828
BanI	GGYRCC	2 cut(s)	140, 2771
BanII	GRGCYC	2 cut(s)	2170, 2255
BarI	GAAGNNNNNNTAC	2 cut(s)	3130, 3162
BbsI	GAAGAC	3 cut(s)	60, 1267, 2496
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	7 cut(s)	653, 824, 847, 1361, 1585, 1825, 3108
BccI	CCATC	8 cut(s)	194, 222, 230, 569, 2155, 2551, 2829, 3163
BceAI	ACGGC	3 cut(s)	13, 65, 266
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	4 cut(s)	378, 1544, 1961, 2120
BclI	TGATCA	1 cut(s)	2941
BcuI	ACTAGT	1 cut(s)	1205
BfaI	CTAG	5 cut(s)	368, 989, 1206, 1328, 3287
BfmI	CTRYAG	4 cut(s)	681, 1170, 1521, 1665
BfoI	RGCGCY	1 cut(s)	1170
BisI	GCNGC	7 cut(s)	642, 813, 861, 1350, 1599, 1839, 3097
BlsI	GCNGC	7 cut(s)	643, 814, 862, 1351, 1600, 1840, 3098
BmcAI	AGTACT	1 cut(s)	2359
Bme1390I	CCNGG	4 cut(s)	378, 1544, 1961, 2120
Bme18I	GGWCC	3 cut(s)	616, 1608, 3143
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	8 cut(s)	374, 616, 1026, 1442, 1455, 1608, 2365, 3143
BmiI	GGNNCC	9 cut(s)	142, 193, 1443, 2124, 2254, 2773, 2782, 2809, 2830
BmrFI	CCNGG	4 cut(s)	378, 1544, 1961, 2120
BmrI	ACTGGG	2 cut(s)	646, 2295
BmsI	GCATC	6 cut(s)	263, 1647, 2085, 2101, 2344, 2697
BmuI	ACTGGG	2 cut(s)	646, 2295
BpiI	GAAGAC	3 cut(s)	60, 1267, 2496
Bpu10I	CCTNAGC	1 cut(s)	2468
Bpu14I	TTCGAA	1 cut(s)	244
BpuEI	CTTGAG	4 cut(s)	786, 979, 1713, 2084
BsaAI	YACGTR	2 cut(s)	1571, 2228
BsaBI	GATNNNNATC	2 cut(s)	755, 2147
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	6 cut(s)	45, 376, 492, 619, 2683, 2775
BsaWI	WCCGGW	1 cut(s)	1245
BsaXI	ACNNNNNCTCC	4 cut(s)	1860, 1890, 2613, 2643
Bsc4I	CCNNNNNNNGG	8 cut(s)	220, 277, 1101, 2068, 2162, 2503, 2758, 3140
Bse21I	CCTNAGG	1 cut(s)	1986
Bse3DI	GCAATG	5 cut(s)	180, 933, 1338, 2568, 3081
Bse8I	GATNNNNATC	2 cut(s)	755, 2147
BseBI	CCWGG	4 cut(s)	378, 1544, 1961, 2120
BseDI	CCNNGG	6 cut(s)	45, 376, 492, 619, 2683, 2775
BseGI	GGATG	5 cut(s)	241, 2335, 2688, 2944, 3367
BseJI	GATNNNNATC	2 cut(s)	755, 2147
BseLI	CCNNNNNNNGG	8 cut(s)	220, 277, 1101, 2068, 2162, 2503, 2758, 3140
BseMI	GCAATG	5 cut(s)	180, 933, 1338, 2568, 3081
BseMII	CTCAG	7 cut(s)	530, 1240, 1793, 2000, 2482, 2965, 3261
BseRI	GAGGAG	1 cut(s)	3273
BseSI	GKGCMC	3 cut(s)	153, 333, 1855
BseXI	GCAGC	7 cut(s)	653, 824, 847, 1361, 1585, 1825, 3108
BsgI	GTGCAG	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	1998
BshFI	GGCC	9 cut(s)	44, 281, 375, 1028, 1444, 1456, 2076, 2367, 2992
BshNI	GGYRCC	2 cut(s)	140, 2771
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	1246
BslFI	GGGAC	3 cut(s)	592, 2926, 3052
BslI	CCNNNNNNNGG	8 cut(s)	220, 277, 1101, 2068, 2162, 2503, 2758, 3140
BsmFI	GGGAC	3 cut(s)	592, 2926, 3052
BsmI	GAATGC	3 cut(s)	86, 240, 2326
BsnI	GGCC	9 cut(s)	44, 281, 375, 1028, 1444, 1456, 2076, 2367, 2992
BsoBI	CYCGRG	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	5 cut(s)	153, 333, 1855, 2170, 2255
Bsp1407I	TGTACA	2 cut(s)	1054, 1507
Bsp19I	CCATGG	1 cut(s)	2775
BspACI	CCGC	3 cut(s)	863, 3112, 3203
BspANI	GGCC	9 cut(s)	44, 281, 375, 1028, 1444, 1456, 2076, 2367, 2992
BspCNI	CTCAG	7 cut(s)	531, 1239, 1792, 1999, 2481, 2964, 3262
BspFNI	CGCG	1 cut(s)	1998
BspHI	TCATGA	1 cut(s)	2107
BspLI	GGNNCC	9 cut(s)	142, 193, 1443, 2124, 2254, 2773, 2782, 2809, 2830
BspMAI	CTGCAG	1 cut(s)	1525
BspPI	GGATC	8 cut(s)	257, 415, 482, 2471, 2775, 2788, 2823, 2836
BspQI	GCTCTTC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	244
BspT107I	GGYRCC	2 cut(s)	140, 2771
BsrDI	GCAATG	5 cut(s)	180, 933, 1338, 2568, 3081
BsrGI	TGTACA	2 cut(s)	1054, 1507
BssECI	CCNNGG	6 cut(s)	45, 376, 492, 619, 2683, 2775
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	2 cut(s)	2683, 2775
Bst2UI	CCWGG	4 cut(s)	378, 1544, 1961, 2120
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	2 cut(s)	133, 2332
BstAUI	TGTACA	2 cut(s)	1054, 1507
BstBAI	YACGTR	2 cut(s)	1571, 2228
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	8 cut(s)	121, 125, 373, 529, 896, 1446, 2078, 3395
BstDSI	CCRYGG	2 cut(s)	492, 2775
BstEII	GGTNACC	2 cut(s)	1789, 2738
BstENI	CCTNNNNNAGG	2 cut(s)	2066, 2501
BstF5I	GGATG	5 cut(s)	241, 2335, 2688, 2944, 3367
BstFNI	CGCG	1 cut(s)	1998
BstH2I	RGCGCY	1 cut(s)	1170
BstHHI	GCGC	3 cut(s)	1169, 1362, 1998
BstNI	CCWGG	4 cut(s)	378, 1544, 1961, 2120
BstNSI	RCATGY	3 cut(s)	123, 131, 1827
BstPI	GGTNACC	2 cut(s)	1789, 2738
BstSCI	CCNGG	4 cut(s)	376, 1542, 1959, 2118
BstSFI	CTRYAG	4 cut(s)	681, 1170, 1521, 1665
BstSLI	GKGCMC	3 cut(s)	153, 333, 1855
BstUI	CGCG	1 cut(s)	1998
BstV1I	GCAGC	7 cut(s)	653, 824, 847, 1361, 1585, 1825, 3108
BstV2I	GAAGAC	3 cut(s)	60, 1267, 2496
BstX2I	RGATCY	3 cut(s)	407, 2780, 2828
BstXI	CCANNNNNNTGG	2 cut(s)	1586, 2651
BstYI	RGATCY	3 cut(s)	407, 2780, 2828
Bsu36I	CCTNAGG	1 cut(s)	1986
BsuRI	GGCC	9 cut(s)	44, 281, 375, 1028, 1444, 1456, 2076, 2367, 2992
BtgI	CCRYGG	2 cut(s)	492, 2775
BtsCI	GGATG	5 cut(s)	241, 2335, 2688, 2944, 3367
BtsI	GCAGTG	2 cut(s)	795, 2330
Cac8I	GCNNGC	8 cut(s)	121, 125, 373, 529, 896, 1446, 2078, 3395
CaiI	CAGNNNCTG	1 cut(s)	773
CciI	TCATGA	1 cut(s)	2107
CfoI	GCGC	3 cut(s)	1169, 1362, 1998
Cfr13I	GGNCC	8 cut(s)	374, 616, 1026, 1442, 1455, 1608, 2365, 3143
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	9 cut(s)	141, 207, 543, 1055, 1203, 1508, 2358, 3120, 3300
CviQI	GTAC	9 cut(s)	141, 207, 543, 1055, 1203, 1508, 2358, 3120, 3300
DraI	TTTAAA	1 cut(s)	1722
DrdI	GACNNNNNNGTC	1 cut(s)	1241
DseDI	GACNNNNNNGTC	1 cut(s)	1241
EaeI	YGGCCR	2 cut(s)	42, 279
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	3101
Eco130I	CCWWGG	2 cut(s)	2683, 2775
Eco24I	GRGCYC	2 cut(s)	2170, 2255
Eco32I	GATATC	2 cut(s)	390, 2407
Eco47I	GGWCC	3 cut(s)	616, 1608, 3143
Eco57I	CTGAAG	5 cut(s)	684, 999, 2163, 2466, 3054
Eco81I	CCTNAGG	1 cut(s)	1986
Eco88I	CYCGRG	1 cut(s)	64
Eco91I	GGTNACC	2 cut(s)	1789, 2738
EcoNI	CCTNNNNNAGG	2 cut(s)	2066, 2501
EcoO109I	RGGNCCY	1 cut(s)	1442
EcoO65I	GGTNACC	2 cut(s)	1789, 2738
EcoRII	CCWGG	4 cut(s)	376, 1542, 1959, 2118
EcoRV	GATATC	2 cut(s)	390, 2407
EcoT14I	CCWWGG	2 cut(s)	2683, 2775
EcoT38I	GRGCYC	2 cut(s)	2170, 2255
ErhI	CCWWGG	2 cut(s)	2683, 2775
FalI	AAGNNNNNCTT	2 cut(s)	2082, 2114
FaqI	GGGAC	3 cut(s)	592, 2926, 3052
FauNDI	CATATG	1 cut(s)	1148
FbaI	TGATCA	1 cut(s)	2941
Fnu4HI	GCNGC	7 cut(s)	642, 813, 861, 1350, 1599, 1839, 3097
FokI	GGATG	5 cut(s)	248, 2322, 2675, 2931, 3374
FriOI	GRGCYC	2 cut(s)	2170, 2255
Fsp4HI	GCNGC	7 cut(s)	642, 813, 861, 1350, 1599, 1839, 3097
FspBI	CTAG	5 cut(s)	368, 989, 1206, 1328, 3287
GlaI	GCGC	3 cut(s)	1168, 1361, 1997
GluI	GCNGC	7 cut(s)	642, 813, 861, 1350, 1599, 1839, 3097
HaeII	RGCGCY	1 cut(s)	1170
HaeIII	GGCC	9 cut(s)	44, 281, 375, 1028, 1444, 1456, 2076, 2367, 2992
HapII	CCGG	1 cut(s)	1246
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	3 cut(s)	1169, 1362, 1998
Hin1I	GRCGYC	1 cut(s)	78
Hin6I	GCGC	3 cut(s)	1167, 1360, 1996
HinP1I	GCGC	3 cut(s)	1167, 1360, 1996
HincII	GTYRAC	1 cut(s)	2598
HindII	GTYRAC	1 cut(s)	2598
HindIII	AAGCTT	3 cut(s)	901, 1480, 2746
HpaII	CCGG	1 cut(s)	1246
HphI	GGTGA	9 cut(s)	22, 899, 1427, 1904, 2703, 2709, 3115, 3368, 3378
Hpy99I	CGWCG	5 cut(s)	10, 76, 86, 95, 164
HpyCH4IV	ACGT	3 cut(s)	1570, 2227, 3108
HpySE526I	ACGT	3 cut(s)	1570, 2227, 3108
Hsp92I	GRCGYC	1 cut(s)	78
HspAI	GCGC	3 cut(s)	1167, 1360, 1996
KpnI	GGTACC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	2941
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	3 cut(s)	677, 2258, 2807
Lsp1109I	GCAGC	7 cut(s)	653, 824, 847, 1361, 1585, 1825, 3108
LweI	GCATC	6 cut(s)	263, 1647, 2085, 2101, 2344, 2697
MaeI	CTAG	5 cut(s)	368, 989, 1206, 1328, 3287
MaeII	ACGT	3 cut(s)	1570, 2227, 3108
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	3 cut(s)	407, 2780, 2828
MhlI	GDGCHC	5 cut(s)	153, 333, 1855, 2170, 2255
MlyI	GAGTC	4 cut(s)	76, 569, 1251, 3037
MmeI	TCCRAC	6 cut(s)	54, 73, 1060, 1257, 1794, 2363
MroXI	GAANNNNTTC	3 cut(s)	984, 1968, 3382
MslI	CAYNNNNRTG	2 cut(s)	1584, 2106
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	1 cut(s)	1246
MspR9I	CCNGG	4 cut(s)	378, 1544, 1961, 2120
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	3 cut(s)	86, 240, 2326
MvaI	CCWGG	4 cut(s)	378, 1544, 1961, 2120
MvnI	CGCG	1 cut(s)	1998
NcoI	CCATGG	1 cut(s)	2775
NdeI	CATATG	1 cut(s)	1148
NlaIV	GGNNCC	9 cut(s)	142, 193, 1443, 2124, 2254, 2773, 2782, 2809, 2830
NmeAIII	GCCGAG	2 cut(s)	70, 156
NmuCI	GTSAC	6 cut(s)	10, 1179, 1208, 1706, 2233, 2928
NspI	RCATGY	3 cut(s)	123, 131, 1827
NspV	TTCGAA	1 cut(s)	244
PaeI	GCATGC	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	64
PagI	TCATGA	1 cut(s)	2107
PciSI	GCTCTTC	1 cut(s)	171
PctI	GAATGC	3 cut(s)	86, 240, 2326
PdmI	GAANNNNTTC	3 cut(s)	984, 1968, 3382
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	2 cut(s)	220, 2758
PfoI	TCCNGGA	1 cut(s)	1959
PkrI	GCNGC	7 cut(s)	643, 814, 862, 1351, 1600, 1840, 3098
PleI	GAGTC	4 cut(s)	75, 568, 1250, 3036
PpsI	GAGTC	4 cut(s)	75, 568, 1250, 3036
Ppu21I	YACGTR	2 cut(s)	1571, 2228
PshBI	ATTAAT	3 cut(s)	947, 1920, 2145
Psp6I	CCWGG	4 cut(s)	376, 1542, 1959, 2118
PspEI	GGTNACC	2 cut(s)	1789, 2738
PspGI	CCWGG	4 cut(s)	376, 1542, 1959, 2118
PspN4I	GGNNCC	9 cut(s)	142, 193, 1443, 2124, 2254, 2773, 2782, 2809, 2830
PspPI	GGNCC	8 cut(s)	374, 616, 1026, 1442, 1455, 1608, 2365, 3143
PspXI	VCTCGAGB	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	1525
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	3 cut(s)	407, 2780, 2828
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	9 cut(s)	142, 208, 544, 1056, 1204, 1509, 2359, 3121, 3301
RsaNI	GTAC	9 cut(s)	141, 207, 543, 1055, 1203, 1508, 2358, 3120, 3300
RseI	CAYNNNNRTG	2 cut(s)	1584, 2106
SapI	GCTCTTC	1 cut(s)	171
SatI	GCNGC	7 cut(s)	642, 813, 861, 1350, 1599, 1839, 3097
Sau96I	GGNCC	8 cut(s)	374, 616, 1026, 1442, 1455, 1608, 2365, 3143
ScaI	AGTACT	1 cut(s)	2359
SchI	GAGTC	4 cut(s)	76, 569, 1251, 3037
ScrFI	CCNGG	4 cut(s)	378, 1544, 1961, 2120
SduI	GDGCHC	5 cut(s)	153, 333, 1855, 2170, 2255
SfaNI	GCATC	6 cut(s)	263, 1647, 2085, 2101, 2344, 2697
SfcI	CTRYAG	4 cut(s)	681, 1170, 1521, 1665
Sfr274I	CTCGAG	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	244
SinI	GGWCC	3 cut(s)	616, 1608, 3143
SlaI	CTCGAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	2 cut(s)	1584, 2106
SmlI	CTYRAG	5 cut(s)	64, 801, 958, 1728, 2063
SmoI	CTYRAG	5 cut(s)	64, 801, 958, 1728, 2063
SpeI	ACTAGT	1 cut(s)	1205
SphI	GCATGC	1 cut(s)	123
SsiI	CCGC	3 cut(s)	863, 3112, 3203
SspI	AATATT	2 cut(s)	1003, 1651
SspMI	CTAG	5 cut(s)	368, 989, 1206, 1328, 3287
StyD4I	CCNGG	4 cut(s)	376, 1542, 1959, 2118
StyI	CCWWGG	2 cut(s)	2683, 2775
TaiI	ACGT	3 cut(s)	1573, 2230, 3111
TaqI	TCGA	5 cut(s)	65, 244, 552, 2631, 3124
TatI	WGTACW	5 cut(s)	542, 1054, 1507, 2357, 3299
TseFI	GTSAC	6 cut(s)	10, 1179, 1208, 1706, 2233, 2928
TseI	GCWGC	7 cut(s)	641, 812, 860, 1349, 1598, 1838, 3096
Tsp45I	GTSAC	6 cut(s)	10, 1179, 1208, 1706, 2233, 2928
TspGWI	ACGGA	5 cut(s)	29, 60, 1081, 2638, 3107
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	2 cut(s)	220, 2758
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	3 cut(s)	616, 1608, 3143
VspI	ATTAAT	3 cut(s)	947, 1920, 2145
XagI	CCTNNNNNAGG	2 cut(s)	2066, 2501
XapI	RAATTY	8 cut(s)	246, 653, 1059, 1555, 1637, 1955, 2634, 3263
XbaI	TCTAGA	1 cut(s)	988
XceI	RCATGY	3 cut(s)	123, 131, 1827
XhoI	CTCGAG	1 cut(s)	64
XmnI	GAANNNNTTC	3 cut(s)	984, 1968, 3382
XspI	CTAG	5 cut(s)	368, 989, 1206, 1328, 3287
ZrmI	AGTACT	1 cut(s)	2359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.