MD13G1022100.v1.1

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011800
Physical Location & Seq
Forward (+)
1595594 .. 1597541
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1022100.v1.1.491

Sequence Viewer

Length: 1908 bp
ATGAAAGGGGAGCATCAGATTCATCAGCTGAATCAGTATCCGCTGCCGCAGCAGCATCCAGACCCGTCCATGGCTTCCGCCTCCGCCGGGGGTGGCTTCGGCAAGGCCAAGATGTGGGAGGACGAATCCCAGAGAATGGACGGCGGGATGGACGAGCTTCTGGCGGTGTTGGGGTACAAGGTTCGGTCTTCGGACATGGCGGATGTTGCTCAGAAGCTTGAGCAGCTTGAAGAATTTATGGGTTGTGCTCAGGAAGATGGACTCTCTCAGCTCGCTTCTGACACCGTTCACTATAACCCGTCGGATCTGTCGACGTGGCTCGAGACCATGATCTCCGAGATTAACGTCCCGCCGCCTAATTTCGATCCTTTAATGGGCGGCGCCGTCGCTGGGATACAGCTTAGTCAGCAGCAAGTCCAGCTCGTTGACGACCCCTTTTTAGCTCCGGCGGAGTCGTCCATCACCACTGTCGATTTCCCAGATCATCGGAAGAGCAAATCCATGAGCACATCACCCACCCAAAATGTATTCGAAGACTGCAACTCTTCTTCCAGCTACTACGACTTCAAATCCATCCCCGGAAACGCCGTGTTCACCAAAACCCGCCTCGATTCTTCCTCGCGGGAGCCCAAGCGTCTCAAATCCTCATCCGGGTCTTCTCCCTCTGACCTCCTCTTCAACCGCCCCGCCGCCTCCTCCCTTCCACAACCACAACAACCCATCTCCCTCCCCGCCCCCGCCGAGTCATCATCAACCCGCCCAGCCCTCCTGGTTGACTCCCAGGAAAACGGAGTCCGACTCGTCCACGGCCTCATGGCCTGCGCGGAAGCCGTCCAGCAGAACAATTTCAACCTTGCCAAAGCCCTGGTGACCCAGATCGGCTACCTGGCAGGTTCACAAGCAGGTGCCATGCGTAAAGTCGCCACCTTCTTCGCCGAAGCCCTGGCCCATCGAATCTTCAGAGTCTACCCTCAGCCGCCGATCGACCACTCCTTCTCCGACATGCTGCAGATGCACTTCTACGAGACCTGCCCCTACCTGAAATTCGCCCACTTCACCGCCAATCAAGCCATCCTCGAATCCCTACACGGCAAAACCAGAGTCCACGTCATCGATTTCTCCATGAACCAGGGGATGCAGTGGCCCGCTCTGATGCAGGCGTTGGCGCTCCGACCCGGCGGCCCGCCCGCTTTTCGGCTCACGGGTATAGGGCCGCCGGCTTCGGATAACTCCGACCACCTTCAGGAAGTGGGATGGAAACTCGCCCAATTGGCTGAAACCATCCACGTTGAGTTTGAATACAGAGGATTTGTGGCAAACAGCTTGGCCGATCTGGACGCGTCGATGCTCGAACTCAGACCGAGTGAGGCTGAATCTGTGGCGGTCAACTCAGTCTTCGAGTTGCACAAGCTGCTAGCCCGACCCGGCGCGATTGAGAAGGTGCTATCAGTGGTGAAGCAAATGAAGCCGGAGATCCTGACCGTGGTGGAGCAGGAGGCGAACCACAACGGTCCTGTTTTTATGGACCGGTTCAACGAGTCGCTCCACTACTACTCGACCCTGTTTGACTCGCTGGAGGGGTCGGCGAACAGCCAGGATAAGGTGATGTCGGAGGTTTACTTGGGGAAGCAAATCTGCAACGTGGTGGCGTGCGAAGGGTTGGACCGGGTGGAGAGGCACGAGACGTTGACCCAGTGGAGAGCCCGGTTCGACTCGGCAGATTTCGTCCCCGTTCATCTCGGGTCGAACGCGTTCAAGCAAGCGAGTATGCTGCTGGCGTTGTTTGCCGGCGGAGATGGATATCGGGTGGAGGAGAACGACGGGTGTCTGATGTTGGGCTGGCACACTCGCCCGCTCATTGCCACCTCGGCTTGGAAACCCTCTTCCAACTCGGTCATCGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
DELLA GRAS

Protein Analysis

636

Amino Acids

69.73

Weight (kDa)

5.3

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DELLA PF12041 51 - 118 5.5e-36 Transcriptional regulator DELLA protein N terminal
GRAS PF03514 267 - 626 8.5e-134 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14920 AT2G01570
fragaria_vesca FvH4_4g34110
malus_domestica MD13G1022100.v1.1 MD16G1023300.v1.1
prunus_persica Prupe.1G329600_v2.0.a1
pyrus_communis pycom13g02070 pycom16g02040 pycom16g02050
rosa_chinensis RchiOBHm_Chr4g0443621
rosa_laevigata RLG00000005909
rosa_multiflora Rmu_sc0001118.1_g000014
rosa_roxburghii Rroxscaffold_5G00384170
rosa_samantha Rh4AG403600 Rh4AG405600 Rh4BG416600 Rh4CG431100 Rh4DG412200
rosa_wichuraiana Rw4G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 893
Acc36I ACCTGC 3 cut(s) 881, 893, 1037
AccB1I GGYRCC 2 cut(s) 380, 905
AccB7I CCANNNNNTGG 2 cut(s) 114, 136
AccBSI CCGCTC 2 cut(s) 1148, 1855
AccI GTMKAC 2 cut(s) 311, 966
AccII CGCG 5 cut(s) 622, 824, 1340, 1430, 1751
AclWI GGATC 3 cut(s) 312, 359, 1468
AcoI YGGCCR 1 cut(s) 1326
AcsI RAATTY 2 cut(s) 233, 1043
AcuI CTGAAG 2 cut(s) 943, 1226
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 1 cut(s) 176
AflIII ACRYGT 2 cut(s) 1338, 1749
AgeI ACCGGT 1 cut(s) 1527
AgsI TTSAA 7 cut(s) 230, 568, 679, 850, 1298, 1534, 1756
AjiI CACGTC 2 cut(s) 315, 1108
AjnI CCWGG 7 cut(s) 768, 780, 864, 885, 942, 1128, 1593
Alw21I GWGCWC 2 cut(s) 250, 509
Alw26I GTCTC 4 cut(s) 317, 641, 1019, 1676
AlwI GGATC 3 cut(s) 312, 359, 1468
Ama87I CYCGRG 2 cut(s) 320, 1739
AoxI GGCC 8 cut(s) 105, 808, 816, 945, 1142, 1180, 1211, 1326
ApeKI GCWGC 8 cut(s) 43, 49, 52, 223, 409, 1006, 1411, 1771
ApoI RAATTY 2 cut(s) 233, 1043
ArsI GACNNNNNNTTYG 2 cut(s) 1086, 1118
AsiGI ACCGGT 1 cut(s) 1527
Asp700I GAANNNNTTC 2 cut(s) 845, 1751
AspLEI GCGC 4 cut(s) 383, 824, 1168, 1430
AspS9I GGNCC 7 cut(s) 946, 1143, 1181, 1211, 1511, 1525, 1663
AsuC2I CCSGG 7 cut(s) 88, 579, 652, 1176, 1425, 1667, 1705
AsuHPI GGTGA 7 cut(s) 454, 504, 586, 880, 1048, 1465, 1615
AsuII TTCGAA 1 cut(s) 531
AsuNHI GCTAGC 1 cut(s) 1414
AvaI CYCGRG 2 cut(s) 320, 1739
AvaII GGWCC 3 cut(s) 1511, 1525, 1663
BanI GGYRCC 2 cut(s) 380, 905
BanII GRGCYC 2 cut(s) 630, 1705
BauI CACGAG 1 cut(s) 1679
BbsI GAAGAC 4 cut(s) 180, 540, 648, 1387
Bbv12I GWGCWC 2 cut(s) 250, 509
BbvCI CCTCAGC 1 cut(s) 972
BbvI GCAGC 8 cut(s) 30, 61, 64, 235, 421, 993, 1398, 1758
BceAI ACGGC 6 cut(s) 157, 368, 572, 815, 823, 1105
BcgI CGANNNNNNTGC 2 cut(s) 1753, 1787
BciT130I CCWGG 7 cut(s) 770, 782, 866, 887, 944, 1130, 1595
BciVI GTATCC 2 cut(s) 48, 387
BcnI CCSGG 7 cut(s) 88, 579, 652, 1176, 1425, 1667, 1705
BcoDI GTCTC 4 cut(s) 317, 641, 1019, 1676
BfaI CTAG 1 cut(s) 1415
BfmI CTRYAG 1 cut(s) 1007
BfoI RGCGCY 2 cut(s) 384, 1169
BfuAI ACCTGC 3 cut(s) 881, 893, 1037
BfuI GTATCC 2 cut(s) 48, 387
BglI GCCNNNNNGGC 2 cut(s) 1271, 1868
Bme18I GGWCC 3 cut(s) 1511, 1525, 1663
BmeT110I CYCGRG 2 cut(s) 320, 1739
BmgBI CACGTC 2 cut(s) 315, 1108
BmgT120I GGNCC 7 cut(s) 946, 1143, 1181, 1211, 1511, 1525, 1663
BmiI GGNNCC 3 cut(s) 382, 627, 907
BmrI ACTGGG 1 cut(s) 1687
BmsI GCATC 6 cut(s) 22, 64, 1002, 1125, 1143, 1335
BmtI GCTAGC 1 cut(s) 1418
BmuI ACTGGG 1 cut(s) 1687
BoxI GACNNNNGTC 1 cut(s) 1824
BpiI GAAGAC 4 cut(s) 180, 540, 648, 1387
BplI GAGNNNNNCTC 2 cut(s) 783, 815
BpmI CTGGAG 1 cut(s) 1595
Bpu10I CCTNAGC 2 cut(s) 249, 972
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 7 cut(s) 88, 579, 652, 1176, 1425, 1667, 1705
Bsa29I ATCGAT 1 cut(s) 1113
BsaBI GATNNNNATC 1 cut(s) 1800
BsaHI GRCGYC 1 cut(s) 381
BsaI GGTCTC 2 cut(s) 317, 1019
BsaWI WCCGGW 1 cut(s) 1527
BsaXI ACNNNNNCTCC 2 cut(s) 980, 1010
Bse118I RCCGGY 3 cut(s) 1216, 1527, 1787
Bse1I ACTGG 1 cut(s) 1693
Bse3DI GCAATG 1 cut(s) 1857
Bse8I GATNNNNATC 1 cut(s) 1800
BseBI CCWGG 7 cut(s) 770, 782, 866, 887, 944, 1130, 1595
BseCI ATCGAT 1 cut(s) 1113
BseGI GGATG 9 cut(s) 55, 153, 208, 573, 647, 1071, 1140, 1259, 1281
BseJI GATNNNNATC 1 cut(s) 1800
BseMI GCAATG 1 cut(s) 1857
BseMII CTCAG 6 cut(s) 224, 263, 281, 986, 1369, 1404
BseNI ACTGG 1 cut(s) 1693
BseRI GAGGAG 3 cut(s) 662, 685, 1826
BseXI GCAGC 8 cut(s) 30, 61, 64, 235, 421, 993, 1398, 1758
BseYI CCCAGC 2 cut(s) 389, 760
Bsh1236I CGCG 5 cut(s) 622, 824, 1340, 1430, 1751
Bsh1285I CGRYCG 1 cut(s) 984
BshFI GGCC 8 cut(s) 107, 810, 818, 947, 1144, 1182, 1213, 1328
BshNI GGYRCC 2 cut(s) 380, 905
BshTI ACCGGT 1 cut(s) 1527
BshVI ATCGAT 1 cut(s) 1113
BsiEI CGRYCG 1 cut(s) 984
BsiHKAI GWGCWC 2 cut(s) 250, 509
BsiHKCI CYCGRG 2 cut(s) 320, 1739
BslFI GGGAC 2 cut(s) 332, 1712
BsmAI GTCTC 4 cut(s) 317, 641, 1019, 1676
BsmBI CGTCTC 2 cut(s) 641, 1676
BsmFI GGGAC 2 cut(s) 332, 1712
BsnI GGCC 8 cut(s) 107, 810, 818, 947, 1144, 1182, 1213, 1328
Bso31I GGTCTC 2 cut(s) 317, 1019
BsoBI CYCGRG 2 cut(s) 320, 1739
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 4 cut(s) 250, 509, 630, 1705
Bsp143I GATC 8 cut(s) 304, 330, 364, 481, 876, 981, 1330, 1473
Bsp19I CCATGG 1 cut(s) 69
BspANI GGCC 8 cut(s) 107, 810, 818, 947, 1144, 1182, 1213, 1328
BspCNI CTCAG 6 cut(s) 223, 262, 280, 985, 1368, 1403
BspDI ATCGAT 1 cut(s) 1113
BspFNI CGCG 5 cut(s) 622, 824, 1340, 1430, 1751
BspLI GGNNCC 3 cut(s) 382, 627, 907
BspMAI CTGCAG 1 cut(s) 1011
BspMI ACCTGC 3 cut(s) 881, 893, 1037
BspOI GCTAGC 1 cut(s) 1418
BspPI GGATC 3 cut(s) 312, 359, 1468
BspQI GCTCTTC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 531
BspT107I GGYRCC 2 cut(s) 380, 905
BspTNI GGTCTC 2 cut(s) 317, 1019
BsrBI CCGCTC 2 cut(s) 1148, 1855
BsrDI GCAATG 1 cut(s) 1857
BsrFI RCCGGY 3 cut(s) 1216, 1527, 1787
BsrI ACTGG 1 cut(s) 1693
BssAI RCCGGY 3 cut(s) 1216, 1527, 1787
BssMI GATC 8 cut(s) 304, 330, 364, 481, 876, 981, 1330, 1473
BssNI GRCGYC 1 cut(s) 381
BssSI CACGAG 1 cut(s) 1679
BssT1I CCWWGG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 1679
Bst2UI CCWGG 7 cut(s) 770, 782, 866, 887, 944, 1130, 1595
Bst4CI ACNGT 4 cut(s) 286, 469, 1483, 1511
Bst6I CTCTTC 4 cut(s) 485, 550, 680, 1888
BstACI GRCGYC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 1411
BstBI TTCGAA 1 cut(s) 531
BstDEI CTNAG 7 cut(s) 210, 249, 267, 401, 972, 1355, 1390
BstDSI CCRYGG 3 cut(s) 69, 805, 1482
BstEII GGTNACC 1 cut(s) 868
BstF5I GGATG 9 cut(s) 55, 153, 208, 573, 647, 1071, 1140, 1259, 1281
BstFNI CGCG 5 cut(s) 622, 824, 1340, 1430, 1751
BstH2I RGCGCY 2 cut(s) 384, 1169
BstHHI GCGC 4 cut(s) 383, 824, 1168, 1430
BstKTI GATC 8 cut(s) 307, 333, 367, 484, 879, 984, 1333, 1476
BstMAI GTCTC 4 cut(s) 317, 641, 1019, 1676
BstMBI GATC 8 cut(s) 304, 330, 364, 481, 876, 981, 1330, 1473
BstMCI CGRYCG 1 cut(s) 984
BstNI CCWGG 7 cut(s) 770, 782, 866, 887, 944, 1130, 1595
BstNSI RCATGY 1 cut(s) 1006
BstPAI GACNNNNGTC 1 cut(s) 1824
BstPI GGTNACC 1 cut(s) 868
BstSFI CTRYAG 1 cut(s) 1007
BstUI CGCG 5 cut(s) 622, 824, 1340, 1430, 1751
BstV1I GCAGC 8 cut(s) 30, 61, 64, 235, 421, 993, 1398, 1758
BstV2I GAAGAC 4 cut(s) 180, 540, 648, 1387
BstX2I RGATCY 2 cut(s) 304, 1473
BstXI CCANNNNNNTGG 1 cut(s) 865
BstYI RGATCY 2 cut(s) 304, 1473
Bsu15I ATCGAT 1 cut(s) 1113
BsuI GTATCC 2 cut(s) 48, 387
BsuRI GGCC 8 cut(s) 107, 810, 818, 947, 1144, 1182, 1213, 1328
BsuTUI ATCGAT 1 cut(s) 1113
BtgI CCRYGG 3 cut(s) 69, 805, 1482
BtgZI GCGATG 1 cut(s) 1882
BtrI CACGTC 2 cut(s) 315, 1108
BtsCI GGATG 9 cut(s) 55, 153, 208, 573, 647, 1071, 1140, 1259, 1281
BtsI GCAGTG 1 cut(s) 1145
BtsIMutI CAGTG 5 cut(s) 465, 1145, 1455, 1700, 1903
BveI ACCTGC 3 cut(s) 881, 893, 1037
CfoI GCGC 4 cut(s) 383, 824, 1168, 1430
Cfr10I RCCGGY 3 cut(s) 1216, 1527, 1787
Cfr13I GGNCC 7 cut(s) 946, 1143, 1181, 1211, 1511, 1525, 1663
ClaI ATCGAT 1 cut(s) 1113
CseI GACGC 3 cut(s) 623, 1329, 1346
Csp6I GTAC 1 cut(s) 175
CspAI ACCGGT 1 cut(s) 1527
CviAII CATG 8 cut(s) 70, 196, 328, 502, 814, 910, 1003, 1123
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 7 cut(s) 210, 249, 267, 401, 972, 1355, 1390
DinI GGCGCC 1 cut(s) 382
DpnI GATC 8 cut(s) 306, 332, 366, 483, 878, 983, 1332, 1475
DpnII GATC 8 cut(s) 304, 330, 364, 481, 876, 981, 1330, 1473
EaeI YGGCCR 1 cut(s) 1326
Eam1104I CTCTTC 4 cut(s) 485, 550, 680, 1888
EarI CTCTTC 4 cut(s) 485, 550, 680, 1888
EciI GGCGGA 5 cut(s) 67, 73, 215, 464, 1806
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 630, 1705
Eco31I GGTCTC 2 cut(s) 317, 1019
Eco32I GATATC 1 cut(s) 1802
Eco47I GGWCC 3 cut(s) 1511, 1525, 1663
Eco57I CTGAAG 2 cut(s) 943, 1226
Eco88I CYCGRG 2 cut(s) 320, 1739
Eco91I GGTNACC 1 cut(s) 868
EcoO65I GGTNACC 1 cut(s) 868
EcoRII CCWGG 7 cut(s) 768, 780, 864, 885, 942, 1128, 1593
EcoRV GATATC 1 cut(s) 1802
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 630, 1705
EgeI GGCGCC 1 cut(s) 382
EheI GGCGCC 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 2 cut(s) 641, 1676
FaeI CATG 8 cut(s) 73, 199, 331, 505, 817, 913, 1006, 1126
FaqI GGGAC 2 cut(s) 332, 1712
FatI CATG 8 cut(s) 69, 195, 327, 501, 813, 909, 1002, 1122
FblI GTMKAC 2 cut(s) 311, 966
FokI GGATG 9 cut(s) 42, 160, 215, 560, 634, 1058, 1147, 1266, 1268
FriOI GRGCYC 2 cut(s) 630, 1705
FspBI CTAG 1 cut(s) 1415
GlaI GCGC 4 cut(s) 382, 823, 1167, 1429
GsaI CCCAGC 2 cut(s) 393, 764
GsuI CTGGAG 1 cut(s) 1595
HaeII RGCGCY 2 cut(s) 384, 1169
HaeIII GGCC 8 cut(s) 107, 810, 818, 947, 1144, 1182, 1213, 1328
HgaI GACGC 3 cut(s) 623, 1329, 1346
HhaI GCGC 4 cut(s) 383, 824, 1168, 1430
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 8 cut(s) 73, 199, 331, 505, 817, 913, 1006, 1126
Hin6I GCGC 4 cut(s) 381, 822, 1166, 1428
HinP1I GCGC 4 cut(s) 381, 822, 1166, 1428
HincII GTYRAC 5 cut(s) 312, 427, 775, 1387, 1689
HindII GTYRAC 5 cut(s) 312, 427, 775, 1387, 1689
HindIII AAGCTT 1 cut(s) 215
HphI GGTGA 7 cut(s) 454, 504, 586, 880, 1048, 1465, 1615
Hpy188III TCNNGA 6 cut(s) 59, 251, 322, 1244, 1334, 1477
Hpy99I CGWCG 5 cut(s) 304, 316, 389, 1345, 1823
HpyAV CCTTC 6 cut(s) 710, 937, 1003, 1250, 1432, 1649
HpyCH4III ACNGT 4 cut(s) 286, 469, 1483, 1511
HpyCH4IV ACGT 6 cut(s) 314, 345, 1107, 1287, 1641, 1685
HpyCH4V TGCA 7 cut(s) 540, 1009, 1015, 1138, 1156, 1405, 1638
HpyF3I CTNAG 7 cut(s) 210, 249, 267, 401, 972, 1355, 1390
HpySE526I ACGT 6 cut(s) 314, 345, 1107, 1287, 1641, 1685
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 8 cut(s) 73, 199, 331, 505, 817, 913, 1006, 1126
HspAI GCGC 4 cut(s) 381, 822, 1166, 1428
KasI GGCGCC 1 cut(s) 380
KroI GCCGGC 2 cut(s) 1216, 1787
KroNI GCCGGC 2 cut(s) 1218, 1789
Kzo9I GATC 8 cut(s) 304, 330, 364, 481, 876, 981, 1330, 1473
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 6 cut(s) 10, 448, 625, 1173, 1489, 1548
Lsp1109I GCAGC 8 cut(s) 30, 61, 64, 235, 421, 993, 1398, 1758
LweI GCATC 6 cut(s) 22, 64, 1002, 1125, 1143, 1335
MaeI CTAG 1 cut(s) 1415
MaeII ACGT 6 cut(s) 314, 345, 1107, 1287, 1641, 1685
MaeIII GTNAC 1 cut(s) 868
MalI GATC 8 cut(s) 306, 332, 366, 483, 878, 983, 1332, 1475
MbiI CCGCTC 2 cut(s) 1148, 1855
MboI GATC 8 cut(s) 304, 330, 364, 481, 876, 981, 1330, 1473
MfeI CAATTG 1 cut(s) 1268
MflI RGATCY 2 cut(s) 304, 1473
MhlI GDGCHC 4 cut(s) 250, 509, 630, 1705
MluCI AATT 5 cut(s) 233, 358, 844, 1043, 1268
MluI ACGCGT 2 cut(s) 1338, 1749
Mly113I GGCGCC 1 cut(s) 381
MmeI TCCRAC 7 cut(s) 282, 820, 1023, 1195, 1257, 1590, 1641
MroNI GCCGGC 2 cut(s) 1216, 1787
MroXI GAANNNNTTC 2 cut(s) 845, 1751
MseI TTAA 2 cut(s) 342, 371
MspA1I CMGCKG 2 cut(s) 28, 43
MunI CAATTG 1 cut(s) 1268
MvaI CCWGG 7 cut(s) 770, 782, 866, 887, 944, 1130, 1595
MvnI CGCG 5 cut(s) 622, 824, 1340, 1430, 1751
NaeI GCCGGC 2 cut(s) 1218, 1789
NarI GGCGCC 1 cut(s) 381
NciI CCSGG 7 cut(s) 88, 579, 652, 1176, 1425, 1667, 1705
NcoI CCATGG 1 cut(s) 69
NdeII GATC 8 cut(s) 304, 330, 364, 481, 876, 981, 1330, 1473
NgoMIV GCCGGC 2 cut(s) 1216, 1787
NheI GCTAGC 1 cut(s) 1414
NlaIII CATG 8 cut(s) 73, 199, 331, 505, 817, 913, 1006, 1126
NlaIV GGNNCC 3 cut(s) 382, 627, 907
NmeAIII GCCGAG 3 cut(s) 766, 1694, 1847
NmuCI GTSAC 1 cut(s) 868
NspI RCATGY 1 cut(s) 1006
NspV TTCGAA 1 cut(s) 531
PaeR7I CTCGAG 1 cut(s) 320
PaqCI CACCTGC 1 cut(s) 893
PciSI GCTCTTC 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PdiI GCCGGC 2 cut(s) 1218, 1789
PdmI GAANNNNTTC 2 cut(s) 845, 1751
PfeI GAWTC 7 cut(s) 19, 31, 125, 611, 954, 1079, 1373
PflMI CCANNNNNTGG 2 cut(s) 114, 136
PinAI ACCGGT 1 cut(s) 1527
Ple19I CGATCG 1 cut(s) 984
PluTI GGCGCC 1 cut(s) 384
PshAI GACNNNNGTC 1 cut(s) 1824
Psp6I CCWGG 7 cut(s) 768, 780, 864, 885, 942, 1128, 1593
PspEI GGTNACC 1 cut(s) 868
PspFI CCCAGC 2 cut(s) 389, 760
PspGI CCWGG 7 cut(s) 768, 780, 864, 885, 942, 1128, 1593
PspN4I GGNNCC 3 cut(s) 382, 627, 907
PspPI GGNCC 7 cut(s) 946, 1143, 1181, 1211, 1511, 1525, 1663
PstI CTGCAG 1 cut(s) 1011
PsuI RGATCY 2 cut(s) 304, 1473
PvuI CGATCG 1 cut(s) 984
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SalI GTCGAC 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 2 cut(s) 342, 371
Sau3AI GATC 8 cut(s) 304, 330, 364, 481, 876, 981, 1330, 1473
Sau96I GGNCC 7 cut(s) 946, 1143, 1181, 1211, 1511, 1525, 1663
SduI GDGCHC 4 cut(s) 250, 509, 630, 1705
SfaNI GCATC 6 cut(s) 22, 64, 1002, 1125, 1143, 1335
SfcI CTRYAG 1 cut(s) 1007
SfoI GGCGCC 1 cut(s) 382
Sfr274I CTCGAG 1 cut(s) 320
SfuI TTCGAA 1 cut(s) 531
SinI GGWCC 3 cut(s) 1511, 1525, 1663
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 218, 320
SmoI CTYRAG 2 cut(s) 218, 320
Sse9I AATT 5 cut(s) 233, 358, 844, 1043, 1268
SspDI GGCGCC 1 cut(s) 380
SspMI CTAG 1 cut(s) 1415
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 4 cut(s) 286, 469, 1483, 1511
TaiI ACGT 6 cut(s) 317, 348, 1110, 1290, 1644, 1688
TaqII GACCGA 3 cut(s) 174, 1375, 1882
TasI AATT 5 cut(s) 233, 358, 844, 1043, 1268
TauI GCSGC 7 cut(s) 49, 355, 381, 692, 979, 1182, 1216
TfiI GAWTC 7 cut(s) 19, 31, 125, 611, 954, 1079, 1373
Tru1I TTAA 2 cut(s) 342, 371
Tru9I TTAA 2 cut(s) 342, 371
TscAI CASTG 4 cut(s) 472, 1145, 1455, 1700
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 8 cut(s) 43, 49, 52, 223, 409, 1006, 1411, 1771
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 5 cut(s) 11, 17, 1139, 1478, 1724
TspGWI ACGGA 1 cut(s) 804
TspRI CASTG 4 cut(s) 472, 1145, 1455, 1700
Van91I CCANNNNNTGG 2 cut(s) 114, 136
VpaK11BI GGWCC 3 cut(s) 1511, 1525, 1663
XapI RAATTY 2 cut(s) 233, 1043
XceI RCATGY 1 cut(s) 1006
XhoI CTCGAG 1 cut(s) 320
XmiI GTMKAC 2 cut(s) 311, 966
XmnI GAANNNNTTC 2 cut(s) 845, 1751
XspI CTAG 1 cut(s) 1415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.