Rroxscaffold_5G00384170

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011800
Physical Location & Seq
Forward (+)
63665997 .. 63667847
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384170.1

Sequence Viewer

Length: 1626 bp
ATGATGAAAAGAGAACATCACAGCCACCCCCACCACCCTAATCCAAACCCTTCCATGGCTTCCACATCCAATGATAAGGCAGGTAAGGCGGCGATGTGGGAGAACTCGCAGCGCGACGACGGCATGGATGAGCTTCTGGCTGTGCTGGGCTACAAGGTCAAGTCTTCTAACATGGCCGATGTGGCCCAGAAGCTCGAACAGCTTGAAGAGTTCATGGGGACAGTTCAGGAAGACGGGCTCTCCCAGCTAGCTTCGGATACGGTTCATTACAATCCCTCGGATCTGTCGACGTGGCTGGAGAGCATGATTTCGGAGATAACACCGCCTTCGAATTTCGACCCGACCCAGTTCGAATCTTCCCCAAGAGAGCCAAAGCGGCTCAAACCTTGTTCTTCTTCAGATTTCTACTCCTCCACCACCACCAACTCGTCTCTTCCACCCGTCCCCAACAACGAGTCAACTCGCCCGGTGGTCGTGGTTGACTCGCAAGAGAACGGCGTCAGACTCGTCCACGGCCTCATGGCCTGCGCCGAAGCCGTCCAGCGCAAGAATTTCGACCTTGCTAAGGCCCTGGTCACCCAGATCAGCTACTTGGCGATTTCACAAGCCGGCGCTATGCGAAAAGTCGCCACCTTCTTCGCCGAGGCTCTAGCCCAGCGGATCTGGGGGGTCTACCCTCAGCCACCGATCGACCACACCTACTCGGAGATGCTCCAGATGCACTTCTACGAGACCTGCCCTTACCTCAAATTCGCCCATTTCACAGCAAATCAAGCCATTCTCGAAGGCTTTCAAGACAAGAAGCGAGTCCATGTCATCGATTTCTCCATGAATCAAGGGATGCAATGGCCGGCTCTCATGCAGGCCCTCGCTCTCCGACCCGGCGGCCCGCCCGCGTTTCGCTTAACCGGAATCGGCCCGCCCGCCGCGGATAACTCGGACCATCTTCAGGAAGTGGGCTGGAAGCTGGCCCAGCTAGCCGAAACCATTCATGTGGAATTTGAGTATAGAGGCTTTGTTGCTAACAGCTTGGCTGATCTAGATGCTTCCATGCTGGAGCTCCGGCCGAGCGAGGTCGAGTCTGTGGCGGTGAACTCCGTCTTCGAGCTTCACAAGCTGTTGGCTCGGCCCGGTGCGATCGACAAAGTGTTGTCCGTGGTGAAGCAAATGAAGCCGGAGATTGTGACGGTTGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCCTGGACCGGTTCAACGAGTCGCTGCACTACTACTCGACCCTGTTTGACTCGCTCGAGGGATCGGTCAACAGCCAGGACAAGGTGATGTCGGAGATGTACTTGGGGAAGCAAATCTTCAATGTGGTGGCATGTGAGGGACCGGACCGGGTCGAGCGGCACGAGACGCTGTCGCAGTGGCGGACCCGGTTCGACGCGTCCGGTTTCGCTCCGGTTCATCTCGGTTCCAACGCGTTCAAGCAAGCCAGCATGCTTTTGGCGCTCTTCGCCGGCGGAGATGGGTACAGAGTGGAGGAGAACGACGGGTGTTTGATGTTGGGCTGGCACACTCGGCCGCTCATCGCCACCTCGGCCTGGAAACTCGGCGGCTCCCAATCGGTGGCGACTCACTCACTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
DELLA GRAS

Protein Analysis

541

Amino Acids

60.0

Weight (kDa)

5.5

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DELLA PF12041 43 - 110 1.4e-34 Transcriptional regulator DELLA protein N terminal
GRAS PF03514 169 - 528 1.6e-133 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14920 AT2G01570
fragaria_vesca FvH4_4g34110
malus_domestica MD13G1022100.v1.1 MD16G1023300.v1.1
prunus_persica Prupe.1G329600_v2.0.a1
pyrus_communis pycom13g02070 pycom16g02040 pycom16g02050
rosa_chinensis RchiOBHm_Chr4g0443621
rosa_laevigata RLG00000005909
rosa_multiflora Rmu_sc0001118.1_g000014
rosa_roxburghii Rroxscaffold_5G00384170
rosa_samantha Rh4AG403600 Rh4AG405600 Rh4BG416600 Rh4CG431100 Rh4DG412200
rosa_wichuraiana Rw4G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 71, 743
AccB7I CCANNNNNTGG 1 cut(s) 1603
AccBSI CCGCTC 2 cut(s) 1381, 1561
AccI GTMKAC 2 cut(s) 287, 672
AccII CGCG 5 cut(s) 114, 896, 929, 1421, 1457
AclWI GGATC 3 cut(s) 288, 668, 1294
AcoI YGGCCR 4 cut(s) 174, 848, 1064, 1556
AcsI RAATTY 4 cut(s) 331, 550, 749, 998
AcuI CTGAAG 2 cut(s) 381, 932
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 2 cut(s) 1325, 1508
AfiI CCNNNNNNNGG 6 cut(s) 55, 565, 949, 1306, 1578, 1603
AflIII ACRYGT 2 cut(s) 1419, 1455
AgeI ACCGGT 1 cut(s) 1233
AgsI TTSAA 5 cut(s) 206, 794, 1240, 1345, 1462
AjiI CACGTC 1 cut(s) 291
AjnI CCWGG 4 cut(s) 570, 1227, 1299, 1577
Alw21I GWGCWC 1 cut(s) 1062
Alw26I GTCTC 3 cut(s) 435, 725, 1382
AlwI GGATC 3 cut(s) 288, 668, 1294
Ama87I CYCGRG 1 cut(s) 1280
ApeKI GCWGC 2 cut(s) 109, 1249
ApoI RAATTY 4 cut(s) 331, 550, 749, 998
AsiGI ACCGGT 1 cut(s) 1233
Asp700I GAANNNNTTC 2 cut(s) 789, 987
AspLEI GCGC 5 cut(s) 114, 530, 546, 614, 1486
AsuC2I CCSGG 5 cut(s) 467, 882, 1131, 1373, 1411
AsuHPI GGTGA 4 cut(s) 568, 1102, 1171, 1321
AsuII TTCGAA 2 cut(s) 329, 351
AsuNHI GCTAGC 2 cut(s) 247, 976
AvaI CYCGRG 1 cut(s) 1280
AvaII GGWCC 6 cut(s) 940, 1217, 1231, 1364, 1369, 1407
BanII GRGCYC 2 cut(s) 240, 1062
BauI CACGAG 1 cut(s) 1385
BbsI GAAGAC 3 cut(s) 156, 237, 1093
Bbv12I GWGCWC 1 cut(s) 1062
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 2 cut(s) 121, 1236
BccI CCATC 2 cut(s) 951, 1496
BceAI ACGGC 4 cut(s) 136, 511, 521, 529
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BciT130I CCWGG 4 cut(s) 572, 1229, 1301, 1579
BciVI GTATCC 1 cut(s) 250
BcnI CCSGG 5 cut(s) 467, 882, 1131, 1373, 1411
BcoDI GTCTC 3 cut(s) 435, 725, 1382
BfaI CTAG 4 cut(s) 248, 650, 977, 1040
BfoI RGCGCY 2 cut(s) 615, 1487
BfuAI ACCTGC 2 cut(s) 71, 743
BfuI GTATCC 1 cut(s) 250
BglI GCCNNNNNGGC 3 cut(s) 182, 376, 1574
BisI GCNGC 9 cut(s) 90, 110, 377, 886, 927, 1250, 1382, 1559, 1591
BlsI GCNGC 9 cut(s) 91, 111, 378, 887, 928, 1251, 1383, 1560, 1592
Bme1390I CCNGG 9 cut(s) 467, 572, 882, 1131, 1229, 1301, 1373, 1411, 1579
Bme18I GGWCC 6 cut(s) 940, 1217, 1231, 1364, 1369, 1407
BmeT110I CYCGRG 1 cut(s) 1280
BmgBI CACGTC 1 cut(s) 291
BmiI GGNNCC 4 cut(s) 1365, 1409, 1450, 1594
BmrFI CCNGG 9 cut(s) 467, 572, 882, 1131, 1229, 1301, 1373, 1411, 1579
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 4 cut(s) 699, 708, 831, 1033
BmtI GCTAGC 2 cut(s) 251, 980
BmuI ACTGGG 1 cut(s) 340
BpiI GAAGAC 3 cut(s) 156, 237, 1093
BpmI CTGGAG 3 cut(s) 317, 698, 1076
Bpu10I CCTNAGC 2 cut(s) 564, 678
Bpu14I TTCGAA 2 cut(s) 329, 351
BpuMI CCSGG 5 cut(s) 467, 882, 1131, 1373, 1411
Bsa29I ATCGAT 1 cut(s) 819
BsaHI GRCGYC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 725
BsaJI CCNNGG 8 cut(s) 54, 276, 511, 570, 642, 927, 1155, 1572
BsaWI WCCGGW 6 cut(s) 908, 1219, 1233, 1366, 1424, 1435
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 565, 949, 1306, 1578, 1603
Bse118I RCCGGY 4 cut(s) 608, 850, 1233, 1493
Bse1I ACTGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 851
BseBI CCWGG 4 cut(s) 572, 1229, 1301, 1579
BseCI ATCGAT 1 cut(s) 819
BseDI CCNNGG 8 cut(s) 54, 276, 511, 570, 642, 927, 1155, 1572
BseGI GGATG 3 cut(s) 65, 133, 846
BseLI CCNNNNNNNGG 6 cut(s) 55, 565, 949, 1306, 1578, 1603
BseMI GCAATG 1 cut(s) 851
BseMII CTCAG 2 cut(s) 692, 1610
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 2 cut(s) 400, 1532
BseX3I CGGCCG 2 cut(s) 1064, 1556
BseXI GCAGC 2 cut(s) 121, 1236
BseYI CCCAGC 4 cut(s) 145, 243, 654, 972
BsgI GTGCAG 1 cut(s) 1235
Bsh1236I CGCG 5 cut(s) 114, 896, 929, 1421, 1457
Bsh1285I CGRYCG 4 cut(s) 690, 1067, 1140, 1559
BshTI ACCGGT 1 cut(s) 1233
BshVI ATCGAT 1 cut(s) 819
BsiEI CGRYCG 4 cut(s) 690, 1067, 1140, 1559
BsiHKAI GWGCWC 1 cut(s) 1062
BsiHKCI CYCGRG 1 cut(s) 1280
BslFI GGGAC 3 cut(s) 232, 428, 1377
BslI CCNNNNNNNGG 6 cut(s) 55, 565, 949, 1306, 1578, 1603
BsmAI GTCTC 3 cut(s) 435, 725, 1382
BsmBI CGTCTC 2 cut(s) 435, 1382
BsmFI GGGAC 3 cut(s) 232, 428, 1377
Bso31I GGTCTC 1 cut(s) 725
BsoBI CYCGRG 1 cut(s) 1280
Bsp119I TTCGAA 2 cut(s) 329, 351
Bsp1286I GDGCHC 2 cut(s) 240, 1062
Bsp143I GATC 7 cut(s) 280, 582, 660, 687, 1036, 1137, 1286
Bsp19I CCATGG 1 cut(s) 54
BspCNI CTCAG 2 cut(s) 691, 1611
BspDI ATCGAT 1 cut(s) 819
BspFNI CGCG 5 cut(s) 114, 896, 929, 1421, 1457
BspLI GGNNCC 4 cut(s) 1365, 1409, 1450, 1594
BspMI ACCTGC 2 cut(s) 71, 743
BspOI GCTAGC 2 cut(s) 251, 980
BspPI GGATC 3 cut(s) 288, 668, 1294
BspQI GCTCTTC 1 cut(s) 1493
BspT104I TTCGAA 2 cut(s) 329, 351
BspTNI GGTCTC 1 cut(s) 725
BsrBI CCGCTC 2 cut(s) 1381, 1561
BsrDI GCAATG 1 cut(s) 851
BsrFI RCCGGY 4 cut(s) 608, 850, 1233, 1493
BsrI ACTGG 1 cut(s) 346
BssAI RCCGGY 4 cut(s) 608, 850, 1233, 1493
BssECI CCNNGG 8 cut(s) 54, 276, 511, 570, 642, 927, 1155, 1572
BssMI GATC 7 cut(s) 280, 582, 660, 687, 1036, 1137, 1286
BssNI GRCGYC 1 cut(s) 498
BssSI CACGAG 1 cut(s) 1385
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 1385
Bst2UI CCWGG 4 cut(s) 572, 1229, 1301, 1579
Bst4CI ACNGT 4 cut(s) 223, 262, 1189, 1217
Bst6I CTCTTC 3 cut(s) 201, 438, 1493
BstACI GRCGYC 1 cut(s) 498
BstBI TTCGAA 2 cut(s) 329, 351
BstDEI CTNAG 3 cut(s) 564, 678, 1619
BstDSI CCRYGG 4 cut(s) 54, 511, 927, 1155
BstEII GGTNACC 1 cut(s) 574
BstENI CCTNNNNNAGG 1 cut(s) 563
BstF5I GGATG 3 cut(s) 65, 133, 846
BstFNI CGCG 5 cut(s) 114, 896, 929, 1421, 1457
BstH2I RGCGCY 2 cut(s) 615, 1487
BstHHI GCGC 5 cut(s) 114, 530, 546, 614, 1486
BstKTI GATC 7 cut(s) 283, 585, 663, 690, 1039, 1140, 1289
BstMAI GTCTC 3 cut(s) 435, 725, 1382
BstMBI GATC 7 cut(s) 280, 582, 660, 687, 1036, 1137, 1286
BstMCI CGRYCG 4 cut(s) 690, 1067, 1140, 1559
BstNI CCWGG 4 cut(s) 572, 1229, 1301, 1579
BstNSI RCATGY 2 cut(s) 1359, 1477
BstPI GGTNACC 1 cut(s) 574
BstSCI CCNGG 9 cut(s) 465, 570, 880, 1129, 1227, 1299, 1371, 1409, 1577
BstUI CGCG 5 cut(s) 114, 896, 929, 1421, 1457
BstV1I GCAGC 2 cut(s) 121, 1236
BstV2I GAAGAC 3 cut(s) 156, 237, 1093
BstX2I RGATCY 2 cut(s) 280, 660
BstXI CCANNNNNNTGG 1 cut(s) 994
BstYI RGATCY 2 cut(s) 280, 660
BstZI CGGCCG 2 cut(s) 1064, 1556
Bsu15I ATCGAT 1 cut(s) 819
BsuI GTATCC 1 cut(s) 250
BsuTUI ATCGAT 1 cut(s) 819
BtgI CCRYGG 4 cut(s) 54, 511, 927, 1155
BtgZI GCGATG 2 cut(s) 107, 1549
BtrI CACGTC 1 cut(s) 291
BtsCI GGATG 3 cut(s) 65, 133, 846
BtsI GCAGTG 1 cut(s) 1406
BtsIMutI CAGTG 2 cut(s) 1406, 1616
BveI ACCTGC 2 cut(s) 71, 743
CfoI GCGC 5 cut(s) 114, 530, 546, 614, 1486
Cfr10I RCCGGY 4 cut(s) 608, 850, 1233, 1493
Cfr42I CCGCGG 1 cut(s) 930
ClaI ATCGAT 1 cut(s) 819
CpoI CGGWCCG 2 cut(s) 1217, 1369
CseI GACGC 4 cut(s) 487, 1399, 1410, 1427
Csp6I GTAC 2 cut(s) 1324, 1507
CspAI ACCGGT 1 cut(s) 1233
CspI CGGWCCG 2 cut(s) 1217, 1369
CviQI GTAC 2 cut(s) 1324, 1507
DdeI CTNAG 3 cut(s) 564, 678, 1619
DpnI GATC 7 cut(s) 282, 584, 662, 689, 1038, 1139, 1288
DpnII GATC 7 cut(s) 280, 582, 660, 687, 1036, 1137, 1286
EaeI YGGCCR 4 cut(s) 174, 848, 1064, 1556
EagI CGGCCG 2 cut(s) 1064, 1556
Eam1104I CTCTTC 3 cut(s) 201, 438, 1493
EarI CTCTTC 3 cut(s) 201, 438, 1493
EciI GGCGGA 2 cut(s) 1420, 1512
Ecl136II GAGCTC 1 cut(s) 1060
EclXI CGGCCG 2 cut(s) 1064, 1556
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 240, 1062
Eco31I GGTCTC 1 cut(s) 725
Eco47I GGWCC 6 cut(s) 940, 1217, 1231, 1364, 1369, 1407
Eco52I CGGCCG 2 cut(s) 1064, 1556
Eco53kI GAGCTC 1 cut(s) 1060
Eco57I CTGAAG 2 cut(s) 381, 932
Eco88I CYCGRG 1 cut(s) 1280
Eco91I GGTNACC 1 cut(s) 574
EcoICRI GAGCTC 1 cut(s) 1060
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoO109I RGGNCCY 2 cut(s) 568, 865
EcoO65I GGTNACC 1 cut(s) 574
EcoRII CCWGG 4 cut(s) 570, 1227, 1299, 1577
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 240, 1062
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 2 cut(s) 435, 1382
FalI AAGNNNNNCTT 2 cut(s) 1325, 1357
FaqI GGGAC 3 cut(s) 232, 428, 1377
FauI CCCGC 4 cut(s) 897, 901, 927, 931
FblI GTMKAC 2 cut(s) 287, 672
Fnu4HI GCNGC 9 cut(s) 90, 110, 377, 886, 927, 1250, 1382, 1559, 1591
FokI GGATG 3 cut(s) 52, 140, 853
FriOI GRGCYC 2 cut(s) 240, 1062
Fsp4HI GCNGC 9 cut(s) 90, 110, 377, 886, 927, 1250, 1382, 1559, 1591
FspBI CTAG 4 cut(s) 248, 650, 977, 1040
GlaI GCGC 5 cut(s) 113, 529, 545, 613, 1485
GluI GCNGC 9 cut(s) 90, 110, 377, 886, 927, 1250, 1382, 1559, 1591
GsaI CCCAGC 4 cut(s) 149, 247, 658, 976
GsuI CTGGAG 3 cut(s) 317, 698, 1076
HaeII RGCGCY 2 cut(s) 615, 1487
HgaI GACGC 4 cut(s) 487, 1399, 1410, 1427
HhaI GCGC 5 cut(s) 114, 530, 546, 614, 1486
Hin1I GRCGYC 1 cut(s) 498
Hin6I GCGC 5 cut(s) 112, 528, 544, 612, 1484
HinP1I GCGC 5 cut(s) 112, 528, 544, 612, 1484
HincII GTYRAC 4 cut(s) 288, 459, 481, 1294
HindII GTYRAC 4 cut(s) 288, 459, 481, 1294
HphI GGTGA 4 cut(s) 568, 1102, 1171, 1321
Hpy166II GTNNAC 7 cut(s) 288, 459, 481, 511, 673, 1093, 1294
Hpy188I TCNGA 9 cut(s) 256, 280, 313, 400, 503, 706, 878, 940, 1318
Hpy188III TCNNGA 6 cut(s) 227, 715, 782, 794, 950, 1040
Hpy8I GTNNAC 7 cut(s) 288, 459, 481, 511, 673, 1093, 1294
Hpy99I CGWCG 5 cut(s) 119, 122, 292, 1421, 1529
HpyAV CCTTC 4 cut(s) 60, 336, 643, 779
HpyCH4III ACNGT 4 cut(s) 223, 262, 1189, 1217
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 4 cut(s) 721, 844, 862, 1252
HpyF3I CTNAG 3 cut(s) 564, 678, 1619
HpySE526I ACGT 1 cut(s) 290
Hsp92I GRCGYC 1 cut(s) 498
HspAI GCGC 5 cut(s) 112, 528, 544, 612, 1484
KroI GCCGGC 3 cut(s) 608, 850, 1493
KroNI GCCGGC 3 cut(s) 610, 852, 1495
KspI CCGCGG 1 cut(s) 930
Kzo9I GATC 7 cut(s) 280, 582, 660, 687, 1036, 1137, 1286
LguI GCTCTTC 1 cut(s) 1493
LmnI GCTCC 6 cut(s) 717, 1057, 1065, 1195, 1438, 1598
Lsp1109I GCAGC 2 cut(s) 121, 1236
LweI GCATC 4 cut(s) 699, 708, 831, 1033
MaeI CTAG 4 cut(s) 248, 650, 977, 1040
MaeII ACGT 1 cut(s) 290
MaeIII GTNAC 2 cut(s) 574, 1183
MalI GATC 7 cut(s) 282, 584, 662, 689, 1038, 1139, 1288
MbiI CCGCTC 2 cut(s) 1381, 1561
MboI GATC 7 cut(s) 280, 582, 660, 687, 1036, 1137, 1286
MflI RGATCY 2 cut(s) 280, 660
MhlI GDGCHC 2 cut(s) 240, 1062
MluCI AATT 4 cut(s) 331, 550, 749, 998
MluI ACGCGT 2 cut(s) 1419, 1455
MlyI GAGTC 8 cut(s) 464, 476, 498, 816, 1088, 1253, 1268, 1603
MmeI TCCRAC 3 cut(s) 901, 1296, 1476
MreI CGCCGGCG 1 cut(s) 1493
MroNI GCCGGC 3 cut(s) 608, 850, 1493
MroXI GAANNNNTTC 2 cut(s) 789, 987
MseI TTAA 1 cut(s) 905
MslI CAYNNNNRTG 1 cut(s) 992
MspA1I CMGCKG 2 cut(s) 658, 929
MspR9I CCNGG 9 cut(s) 467, 572, 882, 1131, 1229, 1301, 1373, 1411, 1579
MvaI CCWGG 4 cut(s) 572, 1229, 1301, 1579
MvnI CGCG 5 cut(s) 114, 896, 929, 1421, 1457
NaeI GCCGGC 3 cut(s) 610, 852, 1495
NciI CCSGG 5 cut(s) 467, 882, 1131, 1373, 1411
NcoI CCATGG 1 cut(s) 54
NdeII GATC 7 cut(s) 280, 582, 660, 687, 1036, 1137, 1286
NgoMIV GCCGGC 3 cut(s) 608, 850, 1493
NheI GCTAGC 2 cut(s) 247, 976
NlaIV GGNNCC 4 cut(s) 1365, 1409, 1450, 1594
NmeAIII GCCGAG 6 cut(s) 667, 1092, 1105, 1534, 1553, 1566
NmuCI GTSAC 2 cut(s) 574, 1183
NspI RCATGY 2 cut(s) 1359, 1477
NspV TTCGAA 2 cut(s) 329, 351
PaeI GCATGC 1 cut(s) 1477
PaeR7I CTCGAG 1 cut(s) 1280
PciSI GCTCTTC 1 cut(s) 1493
PcsI WCGNNNNNNNCGW 2 cut(s) 284, 1383
PdiI GCCGGC 3 cut(s) 610, 852, 1495
PdmI GAANNNNTTC 2 cut(s) 789, 987
PfeI GAWTC 3 cut(s) 353, 832, 912
PflFI GACNNNGTC 2 cut(s) 1373, 1393
PflMI CCANNNNNTGG 1 cut(s) 1603
PfoI TCCNGGA 1 cut(s) 1227
PinAI ACCGGT 1 cut(s) 1233
PkrI GCNGC 9 cut(s) 91, 111, 378, 887, 928, 1251, 1383, 1560, 1592
Ple19I CGATCG 2 cut(s) 690, 1140
PleI GAGTC 8 cut(s) 463, 476, 498, 815, 1087, 1252, 1268, 1603
PpsI GAGTC 8 cut(s) 463, 476, 498, 815, 1087, 1252, 1268, 1603
Psp124BI GAGCTC 1 cut(s) 1062
Psp6I CCWGG 4 cut(s) 570, 1227, 1299, 1577
PspEI GGTNACC 1 cut(s) 574
PspFI CCCAGC 4 cut(s) 145, 243, 654, 972
PspGI CCWGG 4 cut(s) 570, 1227, 1299, 1577
PspN4I GGNNCC 4 cut(s) 1365, 1409, 1450, 1594
PspXI VCTCGAGB 1 cut(s) 1280
PsuI RGATCY 2 cut(s) 280, 660
PsyI GACNNNGTC 2 cut(s) 1373, 1393
PvuI CGATCG 2 cut(s) 690, 1140
RsaI GTAC 2 cut(s) 1325, 1508
RsaNI GTAC 2 cut(s) 1324, 1507
RseI CAYNNNNRTG 1 cut(s) 992
Rsr2I CGGWCCG 2 cut(s) 1217, 1369
RsrII CGGWCCG 2 cut(s) 1217, 1369
SacI GAGCTC 1 cut(s) 1062
SacII CCGCGG 1 cut(s) 930
SalI GTCGAC 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 1493
SaqAI TTAA 1 cut(s) 905
SatI GCNGC 9 cut(s) 90, 110, 377, 886, 927, 1250, 1382, 1559, 1591
Sau3AI GATC 7 cut(s) 280, 582, 660, 687, 1036, 1137, 1286
SchI GAGTC 8 cut(s) 464, 476, 498, 816, 1088, 1253, 1268, 1603
ScrFI CCNGG 9 cut(s) 467, 572, 882, 1131, 1229, 1301, 1373, 1411, 1579
SduI GDGCHC 2 cut(s) 240, 1062
SfaNI GCATC 4 cut(s) 699, 708, 831, 1033
SfiI GGCCNNNNNGGCC 1 cut(s) 182
Sfr274I CTCGAG 1 cut(s) 1280
Sfr303I CCGCGG 1 cut(s) 930
SfuI TTCGAA 2 cut(s) 329, 351
SgrAI CRCCGGYG 1 cut(s) 1493
SgrBI CCGCGG 1 cut(s) 930
SinI GGWCC 6 cut(s) 940, 1217, 1231, 1364, 1369, 1407
SlaI CTCGAG 1 cut(s) 1280
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 1 cut(s) 1280
SmoI CTYRAG 1 cut(s) 1280
SphI GCATGC 1 cut(s) 1477
Sse9I AATT 4 cut(s) 331, 550, 749, 998
SspMI CTAG 4 cut(s) 248, 650, 977, 1040
SstI GAGCTC 1 cut(s) 1062
StyD4I CCNGG 9 cut(s) 465, 570, 880, 1129, 1227, 1299, 1371, 1409, 1577
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 4 cut(s) 223, 262, 1189, 1217
TaiI ACGT 1 cut(s) 293
TaqII GACCGA 1 cut(s) 1279
TasI AATT 4 cut(s) 331, 550, 749, 998
TatI WGTACW 1 cut(s) 1323
TauI GCSGC 7 cut(s) 92, 379, 888, 929, 1384, 1561, 1593
TfiI GAWTC 3 cut(s) 353, 832, 912
Tru1I TTAA 1 cut(s) 905
Tru9I TTAA 1 cut(s) 905
TscAI CASTG 2 cut(s) 1406, 1623
TseFI GTSAC 2 cut(s) 574, 1183
TseI GCWGC 2 cut(s) 109, 1249
Tsp45I GTSAC 2 cut(s) 574, 1183
TspDTI ATGAA 7 cut(s) 20, 202, 254, 845, 980, 1184, 1430
TspGWI ACGGA 2 cut(s) 1087, 1144
TspRI CASTG 2 cut(s) 1406, 1623
Tth111I GACNNNGTC 2 cut(s) 1373, 1393
Van91I CCANNNNNTGG 1 cut(s) 1603
VpaK11BI GGWCC 6 cut(s) 940, 1217, 1231, 1364, 1369, 1407
XagI CCTNNNNNAGG 1 cut(s) 563
XapI RAATTY 4 cut(s) 331, 550, 749, 998
XbaI TCTAGA 1 cut(s) 1039
XceI RCATGY 2 cut(s) 1359, 1477
XcmI CCANNNNNNNNNTGG 1 cut(s) 1477
XhoI CTCGAG 1 cut(s) 1280
XmiI GTMKAC 2 cut(s) 287, 672
XmnI GAANNNNTTC 2 cut(s) 789, 987
XspI CTAG 4 cut(s) 248, 650, 977, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.