RLG00000005909

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011800
Physical Location & Seq
Reverse (-)
2756279 .. 2760366
4088 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005909

Sequence Viewer

Length: 1953 bp
ATGCATTTTACAACCTTCACGTGGTATGGAGCAACGTGTCGTGGACCACCCCTCGCTAATTACCAAAGCAAGTCGCAGAAACCCATGATGAAAAGAGAACATCACAGCCACCCCCACCACCCTAATCCAAACCCTTCCATGGCTTCCACATCCAATGATCATAAGGCAGGTAAGGCGGCGATGTGGGAGGACTCGCAGCGCGACGACGGCATGGATGAGCTTCTGGCTGTGCTGGGCTACAAGGTGAAGTCTTCTAACATGGCCGATGTGGCCCAGAAGCTCGAACAGCTTGAAGAGTTCATGGGGACAGTTCAGGAAGACGGGCTCTCCCAGCTGGCTTCGGATACGGTTCATTACAATCCCTCGGATCTGTCGACTTGGCTGGAGAGCATGATTTCGGAGATAACTCCGCCTCCGAATTTCGACCCTGTAATGGCGGCGCCACCGCCGCTGAATCACCTCGCTGGAAGCTCTGTTGTGCTGGACGATTCGTTTTTGGCTCCGGCCGAGTCCTCCACCATAACCTCTATCGATTTTGGCGATCAACACATGAACACGAACAGAAAATCTCTCAGCCCGCGAACCCAGTTCGAGGACTGCTCGTCTTCCAATTACGAGCTCAAGGCCATACCTGGAAAAGCCATTTTCAGCCAGACCCAGTTCGATTCTTCGCCAAGAGAGCCAAAACGGCTCAAACCTTCTTCTTCTTCTTCTTCAGATTTCTACTCCACCACCAACTCGTCTCTCCAACCCGTCTCCCTCCCCCTCCCCCTCCCCCTCCCCAACAACGAGTCAACTCGCCCGGTGGTCGTGGTCGACTCGCAAGAGAACGGCGTCAGACTCGTCCACGGGCTCATGGCCTGCGCCGAAGCCGTCCAGCGCAAGAATTTCGACCTCGCTAAGGCCCTGGTCACCCAGATCAGCTACTTGGCGATCTCGCAAGCCGGCGCTATGCGAAAGGTGGCCACCTTCTTCGCCGAGGCTCTAGCCCAGCGGATCTGGGGGGTCTACCCTCAGCCACCGATCGACCACACCTACTCCGAGATGCTCCAGATGCACTTCTACGAGACCTGCCCTTACCTCAAATTCGCCCATTTCACAGCTAATCAAGCCATTCTCGAAGGCTTTCAAGACAAGAAGCGAGTCCATGTCATCGATTTCTCCATGAATCAAGGGATGCAATGGCCGGCTCTCATGCAGGCCCTCGCTCTCCGACCCGGCGGCCCGCCCGCCTTTCGCTTAACCGGAATCGGCCCGCCCGCCGCTGATAACTCGGACCATCTTCAGGAAGTGGGCTGGAAGCTGGCCCAGCTAGCCGAAACCATTCATGTGGAATTTGAGTATAGAGGCTTTGTTGCTAACAGCTTGGCTGATCTAGATGCTTCCATGCTGGAGCTCCGGCCGAGCGAGGTCGAGTCTGTGGCGGTGAACTCCGTCTTCGAGCTTCACAAGCTGTTGGCTCGGCCCGGTGCGATCGACAAAGTGTTGTCAGTGGTGAAGCAAATGAAGCCGGAGATTGTGACGGTTGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCCTGGACCGGTTCAACGAGTCGCTGCACTACTACTCGACCCTCTTTGACTCGCTGGAGGGGTCGGTCAACAGCCAGGACAAGGTGATGTCGGAGGTGTACTTGGGGAAGCAAATCTTCAATGTGGTGGCATGTGAGGGACTGGACCGGGTCGAGCGGCACGAGACGCTGTCGCAGTGGCGGACCCTGTTCGACGCCTCCGGTTTCGCTCCGGTTCATCTCGGTTCCAACGCGTTCAAGCAAGCCAGCATGCTTTTGGCGCTCTTCGCCGGCGGAGATGGGTACAGAGTGGAGGAGAACGACGGGTGTTTGATGTTGGGGTGGCACACTCGGCCGCTCATAGCCACCTCGGCCTGGAAACTCGGCTGCTCCCAATCGGTGGCGACTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
DELLA GRAS

Protein Analysis

651

Amino Acids

71.89

Weight (kDa)

5.57

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DELLA PF12041 72 - 139 1.2e-34 Transcriptional regulator DELLA protein N terminal
GRAS PF03514 281 - 640 7.6e-132 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14920 AT2G01570
fragaria_vesca FvH4_4g34110
malus_domestica MD13G1022100.v1.1 MD16G1023300.v1.1
prunus_persica Prupe.1G329600_v2.0.a1
pyrus_communis pycom13g02070 pycom16g02040 pycom16g02050
rosa_chinensis RchiOBHm_Chr4g0443621
rosa_laevigata RLG00000005909
rosa_multiflora Rmu_sc0001118.1_g000014
rosa_roxburghii Rroxscaffold_5G00384170
rosa_samantha Rh4AG403600 Rh4AG405600 Rh4BG416600 Rh4CG431100 Rh4DG412200
rosa_wichuraiana Rw4G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 158, 1079
AccB1I GGYRCC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 1939
AccBSI CCGCTC 2 cut(s) 1717, 1897
AccI GTMKAC 3 cut(s) 374, 816, 1008
AccII CGCG 3 cut(s) 201, 580, 1793
AclWI GGATC 2 cut(s) 375, 1004
AcoI YGGCCR 6 cut(s) 261, 504, 963, 1184, 1400, 1892
AcsI RAATTY 4 cut(s) 418, 886, 1085, 1334
AcuI CTGAAG 2 cut(s) 699, 1268
AcvI CACGTG 1 cut(s) 21
AcyI GRCGYC 3 cut(s) 440, 834, 1755
AfaI GTAC 2 cut(s) 1661, 1844
AfiI CCNNNNNNNGG 9 cut(s) 21, 139, 433, 592, 901, 1285, 1642, 1914, 1939
AflIII ACRYGT 2 cut(s) 35, 1791
AgeI ACCGGT 1 cut(s) 1569
AgsI TTSAA 5 cut(s) 293, 1130, 1576, 1681, 1798
AhdI GACNNNNNGTC 1 cut(s) 601
AjnI CCWGG 5 cut(s) 631, 906, 1563, 1635, 1913
Alw21I GWGCWC 2 cut(s) 621, 1398
Alw26I GTCTC 4 cut(s) 747, 760, 1061, 1718
AlwI GGATC 2 cut(s) 375, 1004
ApeKI GCWGC 3 cut(s) 196, 1585, 1926
ApoI RAATTY 4 cut(s) 418, 886, 1085, 1334
AsiGI ACCGGT 1 cut(s) 1569
Asp700I GAANNNNTTC 2 cut(s) 1125, 1323
AspLEI GCGC 6 cut(s) 201, 442, 866, 882, 950, 1822
AsuC2I CCSGG 4 cut(s) 803, 1218, 1467, 1709
AsuHPI GGTGA 6 cut(s) 256, 449, 904, 1438, 1507, 1657
AsuNHI GCTAGC 1 cut(s) 1312
AvaII GGWCC 6 cut(s) 44, 1276, 1553, 1567, 1705, 1743
BalI TGGCCA 1 cut(s) 965
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 4 cut(s) 327, 621, 855, 1398
BauI CACGAG 1 cut(s) 1721
BbrPI CACGTG 1 cut(s) 21
BbsI GAAGAC 4 cut(s) 243, 324, 597, 1429
Bbv12I GWGCWC 2 cut(s) 621, 1398
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 3 cut(s) 208, 1572, 1913
BccI CCATC 2 cut(s) 1287, 1832
BceAI ACGGC 4 cut(s) 223, 704, 847, 857
BcgI CGANNNNNNTGC 2 cut(s) 871, 905
BciT130I CCWGG 5 cut(s) 633, 908, 1565, 1637, 1915
BciVI GTATCC 1 cut(s) 337
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 4 cut(s) 803, 1218, 1467, 1709
BcoDI GTCTC 4 cut(s) 747, 760, 1061, 1718
BfaI CTAG 3 cut(s) 986, 1313, 1376
BfoI RGCGCY 3 cut(s) 443, 951, 1823
BfuAI ACCTGC 2 cut(s) 158, 1079
BfuI GTATCC 1 cut(s) 337
BglI GCCNNNNNGGC 3 cut(s) 269, 688, 1910
Bme1390I CCNGG 9 cut(s) 633, 803, 908, 1218, 1467, 1565, 1637, 1709, 1915
Bme18I GGWCC 6 cut(s) 44, 1276, 1553, 1567, 1705, 1743
BmeRI GACNNNNNGTC 1 cut(s) 601
BmiI GGNNCC 4 cut(s) 441, 501, 1745, 1786
BmrFI CCNGG 9 cut(s) 633, 803, 908, 1218, 1467, 1565, 1637, 1709, 1915
BmrI ACTGGG 2 cut(s) 580, 652
BmsI GCATC 4 cut(s) 1035, 1044, 1167, 1369
BmtI GCTAGC 1 cut(s) 1316
BmuI ACTGGG 2 cut(s) 580, 652
BpiI GAAGAC 4 cut(s) 243, 324, 597, 1429
BplI GAGNNNNNCTC 2 cut(s) 584, 616
BpmI CTGGAG 4 cut(s) 404, 1034, 1412, 1637
Bpu10I CCTNAGC 2 cut(s) 900, 1014
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 4 cut(s) 803, 1218, 1467, 1709
Bsa29I ATCGAT 2 cut(s) 531, 1155
BsaAI YACGTR 1 cut(s) 21
BsaHI GRCGYC 3 cut(s) 440, 834, 1755
BsaI GGTCTC 1 cut(s) 1061
BsaJI CCNNGG 6 cut(s) 138, 363, 847, 906, 978, 1908
BsaWI WCCGGW 5 cut(s) 1244, 1555, 1569, 1760, 1771
BsaXI ACNNNNNCTCC 6 cut(s) 311, 341, 397, 427, 1022, 1052
Bsc4I CCNNNNNNNGG 9 cut(s) 21, 139, 433, 592, 901, 1285, 1642, 1914, 1939
Bse118I RCCGGY 4 cut(s) 944, 1186, 1569, 1829
Bse1I ACTGG 3 cut(s) 586, 658, 1707
Bse3DI GCAATG 1 cut(s) 1187
BseBI CCWGG 5 cut(s) 633, 908, 1565, 1637, 1915
BseCI ATCGAT 2 cut(s) 531, 1155
BseDI CCNNGG 6 cut(s) 138, 363, 847, 906, 978, 1908
BseGI GGATG 3 cut(s) 149, 220, 1182
BseLI CCNNNNNNNGG 9 cut(s) 21, 139, 433, 592, 901, 1285, 1642, 1914, 1939
BseMI GCAATG 1 cut(s) 1187
BseMII CTCAG 2 cut(s) 586, 1028
BseNI ACTGG 3 cut(s) 586, 658, 1707
BseRI GAGGAG 1 cut(s) 1868
BseX3I CGGCCG 3 cut(s) 504, 1400, 1892
BseXI GCAGC 3 cut(s) 208, 1572, 1913
BseYI CCCAGC 4 cut(s) 232, 330, 990, 1308
BsgI GTGCAG 1 cut(s) 1571
Bsh1236I CGCG 3 cut(s) 201, 580, 1793
Bsh1285I CGRYCG 5 cut(s) 507, 1026, 1403, 1476, 1895
BshNI GGYRCC 1 cut(s) 439
BshTI ACCGGT 1 cut(s) 1569
BshVI ATCGAT 2 cut(s) 531, 1155
BsiEI CGRYCG 5 cut(s) 507, 1026, 1403, 1476, 1895
BsiHKAI GWGCWC 2 cut(s) 621, 1398
BslFI GGGAC 2 cut(s) 319, 1713
BslI CCNNNNNNNGG 9 cut(s) 21, 139, 433, 592, 901, 1285, 1642, 1914, 1939
BsmAI GTCTC 4 cut(s) 747, 760, 1061, 1718
BsmBI CGTCTC 3 cut(s) 747, 760, 1718
BsmFI GGGAC 2 cut(s) 319, 1713
Bso31I GGTCTC 1 cut(s) 1061
Bsp1286I GDGCHC 4 cut(s) 327, 621, 855, 1398
Bsp143I GATC 9 cut(s) 157, 367, 541, 918, 933, 996, 1023, 1372, 1473
Bsp19I CCATGG 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 585, 1027
BspDI ATCGAT 2 cut(s) 531, 1155
BspFNI CGCG 3 cut(s) 201, 580, 1793
BspLI GGNNCC 4 cut(s) 441, 501, 1745, 1786
BspMI ACCTGC 2 cut(s) 158, 1079
BspOI GCTAGC 1 cut(s) 1316
BspPI GGATC 2 cut(s) 375, 1004
BspQI GCTCTTC 1 cut(s) 1829
BspT107I GGYRCC 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 1061
BsrBI CCGCTC 2 cut(s) 1717, 1897
BsrDI GCAATG 1 cut(s) 1187
BsrFI RCCGGY 4 cut(s) 944, 1186, 1569, 1829
BsrI ACTGG 3 cut(s) 586, 658, 1707
BssAI RCCGGY 4 cut(s) 944, 1186, 1569, 1829
BssECI CCNNGG 6 cut(s) 138, 363, 847, 906, 978, 1908
BssMI GATC 9 cut(s) 157, 367, 541, 918, 933, 996, 1023, 1372, 1473
BssNI GRCGYC 3 cut(s) 440, 834, 1755
BssSI CACGAG 1 cut(s) 1721
BssT1I CCWWGG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 1721
Bst2UI CCWGG 5 cut(s) 633, 908, 1565, 1637, 1915
Bst4CI ACNGT 4 cut(s) 310, 349, 1525, 1553
Bst6I CTCTTC 2 cut(s) 288, 1829
BstACI GRCGYC 3 cut(s) 440, 834, 1755
BstBAI YACGTR 1 cut(s) 21
BstDEI CTNAG 3 cut(s) 572, 900, 1014
BstDSI CCRYGG 2 cut(s) 138, 847
BstEII GGTNACC 1 cut(s) 910
BstENI CCTNNNNNAGG 1 cut(s) 899
BstF5I GGATG 3 cut(s) 149, 220, 1182
BstFNI CGCG 3 cut(s) 201, 580, 1793
BstH2I RGCGCY 3 cut(s) 443, 951, 1823
BstHHI GCGC 6 cut(s) 201, 442, 866, 882, 950, 1822
BstKTI GATC 9 cut(s) 160, 370, 544, 921, 936, 999, 1026, 1375, 1476
BstMAI GTCTC 4 cut(s) 747, 760, 1061, 1718
BstMBI GATC 9 cut(s) 157, 367, 541, 918, 933, 996, 1023, 1372, 1473
BstMCI CGRYCG 5 cut(s) 507, 1026, 1403, 1476, 1895
BstNI CCWGG 5 cut(s) 633, 908, 1565, 1637, 1915
BstNSI RCATGY 2 cut(s) 1695, 1813
BstPI GGTNACC 1 cut(s) 910
BstSCI CCNGG 9 cut(s) 631, 801, 906, 1216, 1465, 1563, 1635, 1707, 1913
BstUI CGCG 3 cut(s) 201, 580, 1793
BstV1I GCAGC 3 cut(s) 208, 1572, 1913
BstV2I GAAGAC 4 cut(s) 243, 324, 597, 1429
BstX2I RGATCY 2 cut(s) 367, 996
BstXI CCANNNNNNTGG 1 cut(s) 1330
BstYI RGATCY 2 cut(s) 367, 996
BstZI CGGCCG 3 cut(s) 504, 1400, 1892
Bsu15I ATCGAT 2 cut(s) 531, 1155
BsuI GTATCC 1 cut(s) 337
BsuTUI ATCGAT 2 cut(s) 531, 1155
BtgI CCRYGG 2 cut(s) 138, 847
BtgZI GCGATG 1 cut(s) 194
BtsCI GGATG 3 cut(s) 149, 220, 1182
BtsI GCAGTG 1 cut(s) 1742
BtsIMutI CAGTG 3 cut(s) 1497, 1742, 1948
BveI ACCTGC 2 cut(s) 158, 1079
CfoI GCGC 6 cut(s) 201, 442, 866, 882, 950, 1822
Cfr10I RCCGGY 4 cut(s) 944, 1186, 1569, 1829
ClaI ATCGAT 2 cut(s) 531, 1155
CpoI CGGWCCG 1 cut(s) 1553
CseI GACGC 3 cut(s) 823, 1735, 1763
Csp6I GTAC 2 cut(s) 1660, 1843
CspAI ACCGGT 1 cut(s) 1569
CspI CGGWCCG 1 cut(s) 1553
CviQI GTAC 2 cut(s) 1660, 1843
DdeI CTNAG 3 cut(s) 572, 900, 1014
DinI GGCGCC 1 cut(s) 441
DpnI GATC 9 cut(s) 159, 369, 543, 920, 935, 998, 1025, 1374, 1475
DpnII GATC 9 cut(s) 157, 367, 541, 918, 933, 996, 1023, 1372, 1473
DriI GACNNNNNGTC 1 cut(s) 601
EaeI YGGCCR 6 cut(s) 261, 504, 963, 1184, 1400, 1892
EagI CGGCCG 3 cut(s) 504, 1400, 1892
Eam1104I CTCTTC 2 cut(s) 288, 1829
Eam1105I GACNNNNNGTC 1 cut(s) 601
EarI CTCTTC 2 cut(s) 288, 1829
EciI GGCGGA 3 cut(s) 399, 1756, 1848
Ecl136II GAGCTC 2 cut(s) 619, 1396
EclXI CGGCCG 3 cut(s) 504, 1400, 1892
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 4 cut(s) 327, 621, 855, 1398
Eco31I GGTCTC 1 cut(s) 1061
Eco47I GGWCC 6 cut(s) 44, 1276, 1553, 1567, 1705, 1743
Eco52I CGGCCG 3 cut(s) 504, 1400, 1892
Eco53kI GAGCTC 2 cut(s) 619, 1396
Eco57I CTGAAG 2 cut(s) 699, 1268
Eco72I CACGTG 1 cut(s) 21
Eco91I GGTNACC 1 cut(s) 910
EcoICRI GAGCTC 2 cut(s) 619, 1396
EcoNI CCTNNNNNAGG 1 cut(s) 899
EcoO109I RGGNCCY 2 cut(s) 904, 1201
EcoO65I GGTNACC 1 cut(s) 910
EcoRII CCWGG 5 cut(s) 631, 906, 1563, 1635, 1913
EcoT14I CCWWGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 4 cut(s) 327, 621, 855, 1398
EgeI GGCGCC 1 cut(s) 441
EheI GGCGCC 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 3 cut(s) 747, 760, 1718
FalI AAGNNNNNCTT 2 cut(s) 1661, 1693
FaqI GGGAC 2 cut(s) 319, 1713
FauI CCCGC 5 cut(s) 585, 1233, 1237, 1263, 1267
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 3 cut(s) 374, 816, 1008
FokI GGATG 3 cut(s) 136, 227, 1189
FriOI GRGCYC 4 cut(s) 327, 621, 855, 1398
FspBI CTAG 3 cut(s) 986, 1313, 1376
GlaI GCGC 6 cut(s) 200, 441, 865, 881, 949, 1821
GsaI CCCAGC 4 cut(s) 236, 334, 994, 1312
GsuI CTGGAG 4 cut(s) 404, 1034, 1412, 1637
HaeII RGCGCY 3 cut(s) 443, 951, 1823
HgaI GACGC 3 cut(s) 823, 1735, 1763
HhaI GCGC 6 cut(s) 201, 442, 866, 882, 950, 1822
Hin1I GRCGYC 3 cut(s) 440, 834, 1755
Hin6I GCGC 6 cut(s) 199, 440, 864, 880, 948, 1820
HinP1I GCGC 6 cut(s) 199, 440, 864, 880, 948, 1820
HincII GTYRAC 4 cut(s) 375, 795, 817, 1630
HindII GTYRAC 4 cut(s) 375, 795, 817, 1630
HphI GGTGA 6 cut(s) 256, 449, 904, 1438, 1507, 1657
Hpy166II GTNNAC 9 cut(s) 44, 375, 795, 817, 847, 1009, 1429, 1630, 1660
Hpy188III TCNNGA 6 cut(s) 314, 1051, 1118, 1130, 1286, 1376
Hpy8I GTNNAC 9 cut(s) 44, 375, 795, 817, 847, 1009, 1429, 1630, 1660
Hpy99I CGWCG 4 cut(s) 206, 209, 1757, 1865
HpyAV CCTTC 5 cut(s) 25, 144, 708, 979, 1115
HpyCH4III ACNGT 4 cut(s) 310, 349, 1525, 1553
HpyCH4IV ACGT 2 cut(s) 20, 35
HpyCH4V TGCA 5 cut(s) 4, 1057, 1180, 1198, 1588
HpyF3I CTNAG 3 cut(s) 572, 900, 1014
HpySE526I ACGT 2 cut(s) 20, 35
Hsp92I GRCGYC 3 cut(s) 440, 834, 1755
HspAI GCGC 6 cut(s) 199, 440, 864, 880, 948, 1820
KasI GGCGCC 1 cut(s) 439
KroI GCCGGC 3 cut(s) 944, 1186, 1829
KroNI GCCGGC 3 cut(s) 946, 1188, 1831
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 9 cut(s) 157, 367, 541, 918, 933, 996, 1023, 1372, 1473
LguI GCTCTTC 1 cut(s) 1829
LmnI GCTCC 8 cut(s) 29, 505, 1053, 1393, 1401, 1531, 1774, 1934
Lsp1109I GCAGC 3 cut(s) 208, 1572, 1913
LweI GCATC 4 cut(s) 1035, 1044, 1167, 1369
MaeI CTAG 3 cut(s) 986, 1313, 1376
MaeII ACGT 2 cut(s) 20, 35
MaeIII GTNAC 2 cut(s) 910, 1519
MalI GATC 9 cut(s) 159, 369, 543, 920, 935, 998, 1025, 1374, 1475
MbiI CCGCTC 2 cut(s) 1717, 1897
MboI GATC 9 cut(s) 157, 367, 541, 918, 933, 996, 1023, 1372, 1473
MflI RGATCY 2 cut(s) 367, 996
MhlI GDGCHC 4 cut(s) 327, 621, 855, 1398
MlsI TGGCCA 1 cut(s) 965
MluCI AATT 6 cut(s) 58, 418, 610, 886, 1085, 1334
MluI ACGCGT 1 cut(s) 1791
MluNI TGGCCA 1 cut(s) 965
Mly113I GGCGCC 1 cut(s) 440
MmeI TCCRAC 4 cut(s) 772, 1237, 1632, 1812
Mox20I TGGCCA 1 cut(s) 965
Mph1103I ATGCAT 1 cut(s) 6
MreI CGCCGGCG 1 cut(s) 1829
MroNI GCCGGC 3 cut(s) 944, 1186, 1829
MroXI GAANNNNTTC 2 cut(s) 1125, 1323
MscI TGGCCA 1 cut(s) 965
MseI TTAA 1 cut(s) 1241
MslI CAYNNNNRTG 1 cut(s) 1328
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 4 cut(s) 334, 451, 994, 1265
MspR9I CCNGG 9 cut(s) 633, 803, 908, 1218, 1467, 1565, 1637, 1709, 1915
MvaI CCWGG 5 cut(s) 633, 908, 1565, 1637, 1915
MvnI CGCG 3 cut(s) 201, 580, 1793
NaeI GCCGGC 3 cut(s) 946, 1188, 1831
NarI GGCGCC 1 cut(s) 440
NciI CCSGG 4 cut(s) 803, 1218, 1467, 1709
NcoI CCATGG 1 cut(s) 138
NdeII GATC 9 cut(s) 157, 367, 541, 918, 933, 996, 1023, 1372, 1473
NgoMIV GCCGGC 3 cut(s) 944, 1186, 1829
NheI GCTAGC 1 cut(s) 1312
NlaIV GGNNCC 4 cut(s) 441, 501, 1745, 1786
NmeAIII GCCGAG 7 cut(s) 532, 1003, 1428, 1441, 1870, 1889, 1902
NmuCI GTSAC 2 cut(s) 910, 1519
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 1695, 1813
PaeI GCATGC 1 cut(s) 1813
PciSI GCTCTTC 1 cut(s) 1829
PcsI WCGNNNNNNNCGW 3 cut(s) 371, 537, 1719
PdiI GCCGGC 3 cut(s) 946, 1188, 1831
PdmI GAANNNNTTC 2 cut(s) 1125, 1323
PfeI GAWTC 5 cut(s) 454, 488, 665, 1168, 1248
PflFI GACNNNGTC 2 cut(s) 1709, 1729
PflMI CCANNNNNTGG 1 cut(s) 1939
PfoI TCCNGGA 1 cut(s) 1563
PinAI ACCGGT 1 cut(s) 1569
Ple19I CGATCG 2 cut(s) 1026, 1476
PluTI GGCGCC 1 cut(s) 443
PmaCI CACGTG 1 cut(s) 21
PmlI CACGTG 1 cut(s) 21
Ppu21I YACGTR 1 cut(s) 21
Psp124BI GAGCTC 2 cut(s) 621, 1398
Psp6I CCWGG 5 cut(s) 631, 906, 1563, 1635, 1913
PspCI CACGTG 1 cut(s) 21
PspEI GGTNACC 1 cut(s) 910
PspFI CCCAGC 4 cut(s) 232, 330, 990, 1308
PspGI CCWGG 5 cut(s) 631, 906, 1563, 1635, 1913
PspN4I GGNNCC 4 cut(s) 441, 501, 1745, 1786
PsuI RGATCY 2 cut(s) 367, 996
PsyI GACNNNGTC 2 cut(s) 1709, 1729
PvuI CGATCG 2 cut(s) 1026, 1476
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 2 cut(s) 1661, 1844
RsaNI GTAC 2 cut(s) 1660, 1843
RseI CAYNNNNRTG 1 cut(s) 1328
Rsr2I CGGWCCG 1 cut(s) 1553
RsrII CGGWCCG 1 cut(s) 1553
SacI GAGCTC 2 cut(s) 621, 1398
SalI GTCGAC 2 cut(s) 373, 815
SapI GCTCTTC 1 cut(s) 1829
SaqAI TTAA 1 cut(s) 1241
Sau3AI GATC 9 cut(s) 157, 367, 541, 918, 933, 996, 1023, 1372, 1473
ScrFI CCNGG 9 cut(s) 633, 803, 908, 1218, 1467, 1565, 1637, 1709, 1915
SduI GDGCHC 4 cut(s) 327, 621, 855, 1398
SfaNI GCATC 4 cut(s) 1035, 1044, 1167, 1369
SfiI GGCCNNNNNGGCC 1 cut(s) 269
SfoI GGCGCC 1 cut(s) 441
SgrAI CRCCGGYG 1 cut(s) 1829
SinI GGWCC 6 cut(s) 44, 1276, 1553, 1567, 1705, 1743
SmiMI CAYNNNNRTG 1 cut(s) 1328
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
SphI GCATGC 1 cut(s) 1813
Sse9I AATT 6 cut(s) 58, 418, 610, 886, 1085, 1334
SspDI GGCGCC 1 cut(s) 439
SspMI CTAG 3 cut(s) 986, 1313, 1376
SstI GAGCTC 2 cut(s) 621, 1398
StyD4I CCNGG 9 cut(s) 631, 801, 906, 1216, 1465, 1563, 1635, 1707, 1913
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 4 cut(s) 310, 349, 1525, 1553
TaiI ACGT 2 cut(s) 23, 38
TaqII GACCGA 1 cut(s) 1615
TasI AATT 6 cut(s) 58, 418, 610, 886, 1085, 1334
TatI WGTACW 1 cut(s) 1659
TauI GCSGC 7 cut(s) 179, 440, 451, 1224, 1265, 1720, 1897
TfiI GAWTC 5 cut(s) 454, 488, 665, 1168, 1248
Tru1I TTAA 1 cut(s) 1241
Tru9I TTAA 1 cut(s) 1241
TscAI CASTG 2 cut(s) 1497, 1742
TseFI GTSAC 2 cut(s) 910, 1519
TseI GCWGC 3 cut(s) 196, 1585, 1926
Tsp45I GTSAC 2 cut(s) 910, 1519
TspDTI ATGAA 8 cut(s) 104, 289, 341, 566, 1181, 1316, 1520, 1766
TspGWI ACGGA 1 cut(s) 1423
TspRI CASTG 2 cut(s) 1497, 1742
Tth111I GACNNNGTC 2 cut(s) 1709, 1729
Van91I CCANNNNNTGG 1 cut(s) 1939
VpaK11BI GGWCC 6 cut(s) 44, 1276, 1553, 1567, 1705, 1743
XagI CCTNNNNNAGG 1 cut(s) 899
XapI RAATTY 4 cut(s) 418, 886, 1085, 1334
XbaI TCTAGA 1 cut(s) 1375
XceI RCATGY 2 cut(s) 1695, 1813
XcmI CCANNNNNNNNNTGG 1 cut(s) 1813
XmiI GTMKAC 3 cut(s) 374, 816, 1008
XmnI GAANNNNTTC 2 cut(s) 1125, 1323
XspI CTAG 3 cut(s) 986, 1313, 1376
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.